RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 PPM1FP49593 454 aaPredicted RBP14.93□□□□□ -0.02
PCF11-201ENST00000298281 CT47A1Q5JQC4 288 aaPredicted RBP14.93□□□□□ -0.02
PCF11-201ENST00000298281 R3HCC1Q9Y3T6 440 aaKnown RBP14.92□□□□□ -0.02
PCF11-201ENST00000298281 CARMIL2Q6F5E8 1435 aa14.92□□□□□ -0.02
PCF11-201ENST00000298281 KIF3AQ9Y496 699 aa14.92□□□□□ -0.02
PCF11-201ENST00000298281 ZFYVE27Q5T4F4 411 aa14.92□□□□□ -0.02
PCF11-201ENST00000298281 ARHGAP35Q9NRY4 1499 aa14.92□□□□□ -0.02
PCF11-201ENST00000298281 TCERG1O14776 1098 aaKnown RBP14.92□□□□□ -0.02
PCF11-201ENST00000298281 TPM1P09493 284 aa14.92□□□□□ -0.02
PCF11-201ENST00000298281 AKAP17AQ02040 695 aaKnown RBP14.92□□□□□ -0.02
PCF11-201ENST00000298281 CCDC97Q96F63 343 aaPredicted RBP14.91□□□□□ -0.02
PCF11-201ENST00000298281 SETD5Q9C0A6 1442 aa14.91□□□□□ -0.02
PCF11-201ENST00000298281 U2AF1L5P0DN76 240 aaPredicted RBP14.91□□□□□ -0.02
PCF11-201ENST00000298281 U2AF1Q01081 240 aaKnown RBP eCLIP14.91□□□□□ -0.02
PCF11-201ENST00000298281 CARMIL1Q5VZK9 1371 aa14.91□□□□□ -0.02
PCF11-201ENST00000298281 EIF4G1Q04637 1599 aaKnown RBP14.9□□□□□ -0.02
PCF11-201ENST00000298281 CHMP4CQ96CF2 233 aa14.9□□□□□ -0.02
PCF11-201ENST00000298281 LMOD3Q0VAK6 560 aa14.9□□□□□ -0.02
PCF11-201ENST00000298281 MAP7D2Q96T17 732 aa14.89□□□□□ -0.03
PCF11-201ENST00000298281 RCAN3Q9UKA8 241 aa14.89□□□□□ -0.03
PCF11-201ENST00000298281 BAZ1AQ9NRL2 1556 aaPredicted RBP14.89□□□□□ -0.03
PCF11-201ENST00000298281 NOL10Q9BSC4 688 aaKnown RBP14.89□□□□□ -0.03
PCF11-201ENST00000298281 TERF2IPQ9NYB0 399 aa14.89□□□□□ -0.03
PCF11-201ENST00000298281 ITPRIPQ8IWB1 547 aa14.89□□□□□ -0.03
PCF11-201ENST00000298281 GPS2Q13227 327 aa14.88□□□□□ -0.03
PCF11-201ENST00000298281 SAFB2Q14151 953 aaKnown RBP eCLIP14.88□□□□□ -0.03
PCF11-201ENST00000298281 WWC2Q6AWC2 1192 aa14.88□□□□□ -0.03
PCF11-201ENST00000298281 GGT6Q6P531 493 aa14.88□□□□□ -0.03
PCF11-201ENST00000298281 AMOTL1Q8IY63 956 aa14.88□□□□□ -0.03
PCF11-201ENST00000298281 PHF14O94880 888 aa14.87□□□□□ -0.03
PCF11-201ENST00000298281 NOL8Q76FK4 1167 aaKnown RBP14.87□□□□□ -0.03
PCF11-201ENST00000298281 ROCK2O75116 1388 aaKnown RBP14.87□□□□□ -0.03
PCF11-201ENST00000298281 H3BQV1 296 aa14.86□□□□□ -0.03
PCF11-201ENST00000298281 IFFO2Q5TF58 517 aa14.86□□□□□ -0.03
PCF11-201ENST00000298281 STK26Q9P289 416 aa14.86□□□□□ -0.03
PCF11-201ENST00000298281 PKD2Q13563 968 aa14.86□□□□□ -0.03
PCF11-201ENST00000298281 MEX3CQ5U5Q3 659 aaKnown RBP14.85□□□□□ -0.03
PCF11-201ENST00000298281 EFCAB2Q5VUJ9 269 aa14.85□□□□□ -0.03
PCF11-201ENST00000298281 HSP90AB2PQ58FF8 381 aa14.85□□□□□ -0.03
PCF11-201ENST00000298281 PHLDB1Q86UU1 1377 aa14.85□□□□□ -0.03
PCF11-201ENST00000298281 NAP1L1P55209 391 aaKnown RBP14.84□□□□□ -0.03
PCF11-201ENST00000298281 TMEM132AQ24JP5 1023 aa14.84□□□□□ -0.03
PCF11-201ENST00000298281 HSPA5P11021 654 aaKnown RBP14.84□□□□□ -0.03
PCF11-201ENST00000298281 CCAR1Q8IX12 1150 aaKnown RBP14.84□□□□□ -0.03
PCF11-201ENST00000298281 CUX2O14529 1486 aa14.84□□□□□ -0.03
PCF11-201ENST00000298281 AEBP2Q6ZN18 517 aaPredicted RBP14.84□□□□□ -0.03
PCF11-201ENST00000298281 DHX16O60231 1041 aaKnown RBP14.83□□□□□ -0.03
PCF11-201ENST00000298281 ANKRD30AQ9BXX3 1397 aa14.83□□□□□ -0.03
PCF11-201ENST00000298281 GOLGA6L19H0YKK7 550 aa14.83□□□□□ -0.04
PCF11-201ENST00000298281 PDE3BQ13370 1112 aa14.82□□□□□ -0.04
PCF11-201ENST00000298281 WDR70Q9NW82 654 aa14.82□□□□□ -0.04
PCF11-201ENST00000298281 KIF16BQ96L93 1317 aa14.82□□□□□ -0.04
PCF11-201ENST00000298281 RSPH4AQ5TD94 716 aa14.82□□□□□ -0.04
PCF11-201ENST00000298281 EID1Q9Y6B2 187 aa14.82□□□□□ -0.04
PCF11-201ENST00000298281 RUFY1Q96T51 708 aa14.82□□□□□ -0.04
PCF11-201ENST00000298281 IPO7O95373 1038 aaKnown RBP14.82□□□□□ -0.04
PCF11-201ENST00000298281 DEKP35659 375 aaKnown RBP14.82□□□□□ -0.04
PCF11-201ENST00000298281 SMC4Q9NTJ3 1288 aa14.82□□□□□ -0.04
PCF11-201ENST00000298281 FMN1Q68DA7 1419 aa14.81□□□□□ -0.04
PCF11-201ENST00000298281 FOXD4L5Q5VV16 416 aaPredicted RBP14.81□□□□□ -0.04
PCF11-201ENST00000298281 FOXD4L4Q8WXT5 416 aaPredicted RBP14.81□□□□□ -0.04
PCF11-201ENST00000298281 ST18O60284 1047 aa14.81□□□□□ -0.04
PCF11-201ENST00000298281 PLCD4Q9BRC7 762 aa14.81□□□□□ -0.04
PCF11-201ENST00000298281 HOMER1Q86YM7 354 aa14.81□□□□□ -0.04
PCF11-201ENST00000298281 EPS15P42566 896 aa14.8□□□□□ -0.04
PCF11-201ENST00000298281 ZNF771Q7L3S4 317 aaPredicted RBP14.8□□□□□ -0.04
PCF11-201ENST00000298281 FAM184AQ8NB25 1140 aa14.79□□□□□ -0.04
PCF11-201ENST00000298281 NUP155O75694 1391 aa14.79□□□□□ -0.04
PCF11-201ENST00000298281 GOLGA6L3A6NEY3 463 aa14.79□□□□□ -0.04
PCF11-201ENST00000298281 EVA1CP58658 441 aa14.78□□□□□ -0.04
PCF11-201ENST00000298281 SYNE3Q6ZMZ3 975 aa14.78□□□□□ -0.04
PCF11-201ENST00000298281 ZNF592Q92610 1267 aa14.78□□□□□ -0.04
PCF11-201ENST00000298281 VPS37DQ86XT2 251 aa14.78□□□□□ -0.04
PCF11-201ENST00000298281 CCDC47Q96A33 483 aaKnown RBP14.78□□□□□ -0.04
PCF11-201ENST00000298281 VPS8Q8N3P4 1428 aa14.78□□□□□ -0.04
PCF11-201ENST00000298281 LRRFIP1Q32MZ4 808 aaKnown RBP14.78□□□□□ -0.04
PCF11-201ENST00000298281 RBM19Q9Y4C8 960 aaKnown RBP14.78□□□□□ -0.04
PCF11-201ENST00000298281 SLC4A10Q6U841 1118 aa14.78□□□□□ -0.04
PCF11-201ENST00000298281 ZRSR2Q15696 482 aaKnown RBP14.77□□□□□ -0.04
PCF11-201ENST00000298281 FOXD4L1Q9NU39 408 aa14.77□□□□□ -0.05
PCF11-201ENST00000298281 NLRP13Q86W25 1043 aa14.77□□□□□ -0.05
PCF11-201ENST00000298281 ATP6V1DQ9Y5K8 247 aa14.76□□□□□ -0.05
PCF11-201ENST00000298281 RDXP35241 583 aaKnown RBP14.76□□□□□ -0.05
PCF11-201ENST00000298281 SLKQ9H2G2 1235 aaPredicted RBP14.76□□□□□ -0.05
PCF11-201ENST00000298281 MCTP1Q6DN14 999 aa14.76□□□□□ -0.05
PCF11-201ENST00000298281 CCDC191Q8NCU4 936 aa14.76□□□□□ -0.05
PCF11-201ENST00000298281 SKIDA1Q1XH10 827 aa14.76□□□□□ -0.05
PCF11-201ENST00000298281 ANKRD20A12PQ8NF67 263 aa14.76□□□□□ -0.05
PCF11-201ENST00000298281 NEFHP12036 1026 aa14.75□□□□□ -0.05
PCF11-201ENST00000298281 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.75□□□□□ -0.05
PCF11-201ENST00000298281 MPHOSPH9Q99550 1183 aa14.75□□□□□ -0.05
PCF11-201ENST00000298281 CDR1P51861 262 aa14.75□□□□□ -0.05
PCF11-201ENST00000298281 CENPJQ9HC77 1338 aaPredicted RBP14.75□□□□□ -0.05
PCF11-201ENST00000298281 NGDNQ8NEJ9 315 aaKnown RBP14.75□□□□□ -0.05
PCF11-201ENST00000298281 AMPHP49418 695 aa14.74□□□□□ -0.05
PCF11-201ENST00000298281 MFAP1P55081 439 aaKnown RBP14.74□□□□□ -0.05
PCF11-201ENST00000298281 MYO15BQ96JP2 1530 aa14.74□□□□□ -0.05
PCF11-201ENST00000298281 BECN2A8MW95 431 aa14.74□□□□□ -0.05
PCF11-201ENST00000298281 TEX35Q5T0J7 233 aa14.74□□□□□ -0.05
PCF11-201ENST00000298281 TRIM29Q14134 588 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms