RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SLC24A1O60721 1099 aa19.95■□□□□ 0.78
SHH-201ENST00000297261 WDR97A6NE52 1622 aa19.95■□□□□ 0.78
SHH-201ENST00000297261 GPATCH8Q9UKJ3 1502 aaKnown RBP19.94■□□□□ 0.78
SHH-201ENST00000297261 ST20-MTHFSA0A0A6YYL1 179 aa19.94■□□□□ 0.78
SHH-201ENST00000297261 CC2D1BQ5T0F9 858 aaKnown RBP19.94■□□□□ 0.78
SHH-201ENST00000297261 WASHC2CQ9Y4E1 1318 aa19.93■□□□□ 0.78
SHH-201ENST00000297261 AKNAQ7Z591 1439 aa19.92■□□□□ 0.78
SHH-201ENST00000297261 USP47Q96K76 1375 aa19.91■□□□□ 0.78
SHH-201ENST00000297261 KIAA1107Q9UPP5 1409 aa19.9■□□□□ 0.78
SHH-201ENST00000297261 NCOA1Q15788 1441 aa19.9■□□□□ 0.78
SHH-201ENST00000297261 CEP170Q5SW79 1584 aa19.9■□□□□ 0.78
SHH-201ENST00000297261 PLEKHH2Q8IVE3 1493 aa19.89■□□□□ 0.77
SHH-201ENST00000297261 NBPF8Q3BBV2 869 aa19.88■□□□□ 0.77
SHH-201ENST00000297261 MAPKBP1O60336 1514 aa19.88■□□□□ 0.77
SHH-201ENST00000297261 TCERG1O14776 1098 aaKnown RBP19.88■□□□□ 0.77
SHH-201ENST00000297261 CCDC141Q6ZP82 1450 aa19.87■□□□□ 0.77
SHH-201ENST00000297261 NEUROD2Q15784 382 aa19.86■□□□□ 0.77
SHH-201ENST00000297261 NCLP19338 710 aaKnown RBP19.86■□□□□ 0.77
SHH-201ENST00000297261 RCAN3Q9UKA8 241 aa19.85■□□□□ 0.77
SHH-201ENST00000297261 NUDCQ9Y266 331 aa19.84■□□□□ 0.77
SHH-201ENST00000297261 TRHP20396 242 aaPredicted RBP19.84■□□□□ 0.77
SHH-201ENST00000297261 MAGI3Q5TCQ9 1506 aa19.84■□□□□ 0.77
SHH-201ENST00000297261 FAM69CQ0P6D2 419 aa19.84■□□□□ 0.77
SHH-201ENST00000297261 SPRYD3Q8NCJ5 442 aa19.84■□□□□ 0.77
SHH-201ENST00000297261 FRAT1Q92837 279 aaPredicted RBP19.84■□□□□ 0.77
SHH-201ENST00000297261 TCOF1Q13428 1488 aaKnown RBP19.83■□□□□ 0.77
SHH-201ENST00000297261 SCAPERQ9BY12 1400 aa19.83■□□□□ 0.76
SHH-201ENST00000297261 NUTM2DQ5VT03 806 aaPredicted RBP19.83■□□□□ 0.76
SHH-201ENST00000297261 ANKRD30BQ9BXX2 1392 aa19.82■□□□□ 0.76
SHH-201ENST00000297261 WASHC2AQ641Q2 1341 aa19.82■□□□□ 0.76
SHH-201ENST00000297261 SAFB2Q14151 953 aaKnown RBP eCLIP19.82■□□□□ 0.76
SHH-201ENST00000297261 SLKQ9H2G2 1235 aaPredicted RBP19.82■□□□□ 0.76
SHH-201ENST00000297261 POGKQ9P215 609 aa19.81■□□□□ 0.76
SHH-201ENST00000297261 GOLGA6L22H0YM25 854 aa19.81■□□□□ 0.76
SHH-201ENST00000297261 KIF7Q2M1P5 1343 aa19.79■□□□□ 0.76
SHH-201ENST00000297261 CCDC7Q96M83 1385 aa19.79■□□□□ 0.76
SHH-201ENST00000297261 SLC4A3P48751 1232 aa19.79■□□□□ 0.76
SHH-201ENST00000297261 GZF1Q9H116 711 aaPredicted RBP19.78■□□□□ 0.76
SHH-201ENST00000297261 STK26Q9P289 416 aa19.78■□□□□ 0.76
SHH-201ENST00000297261 PRKRIP1Q9H875 184 aaPredicted RBP19.78■□□□□ 0.76
SHH-201ENST00000297261 ANO8Q9HCE9 1232 aaPredicted RBP19.76■□□□□ 0.75
SHH-201ENST00000297261 KTN1Q86UP2 1357 aaKnown RBP19.76■□□□□ 0.75
SHH-201ENST00000297261 L1TD1Q5T7N2 865 aaKnown RBP19.76■□□□□ 0.75
SHH-201ENST00000297261 TNNT2P45379 298 aaPredicted RBP19.76■□□□□ 0.75
SHH-201ENST00000297261 PNNQ9H307 717 aaKnown RBP19.74■□□□□ 0.75
SHH-201ENST00000297261 PDE4AP27815 886 aa19.74■□□□□ 0.75
SHH-201ENST00000297261 ITSN2Q9NZM3 1697 aa19.74■□□□□ 0.75
SHH-201ENST00000297261 USP35Q9P2H5 1018 aa19.73■□□□□ 0.75
SHH-201ENST00000297261 RAPGEF3O95398 923 aa19.72■□□□□ 0.75
SHH-201ENST00000297261 EIF3AQ14152 1382 aaKnown RBP19.72■□□□□ 0.75
SHH-201ENST00000297261 PTMAP06454 111 aaKnown RBP19.72■□□□□ 0.75
SHH-201ENST00000297261 RALBP1Q15311 655 aa19.72■□□□□ 0.75
SHH-201ENST00000297261 DNTTIP2Q5QJE6 756 aaKnown RBP19.71■□□□□ 0.75
SHH-201ENST00000297261 TRAK1Q9UPV9 953 aa19.71■□□□□ 0.75
SHH-201ENST00000297261 FTSJ3Q8IY81 847 aaKnown RBP19.7■□□□□ 0.74
SHH-201ENST00000297261 SRPK2P78362 688 aaKnown RBP19.7■□□□□ 0.74
SHH-201ENST00000297261 NBPF1Q3BBV0 1214 aa19.7■□□□□ 0.74
SHH-201ENST00000297261 GSE1Q14687 1217 aa19.69■□□□□ 0.74
SHH-201ENST00000297261 PAK3O75914 559 aaPredicted RBP19.68■□□□□ 0.74
SHH-201ENST00000297261 CNTLNQ9NXG0 1405 aa19.68■□□□□ 0.74
SHH-201ENST00000297261 TPRNQ4KMQ1 711 aa19.68■□□□□ 0.74
SHH-201ENST00000297261 EXOC6Q8TAG9 804 aa19.67■□□□□ 0.74
SHH-201ENST00000297261 PANK3Q9H999 370 aa19.67■□□□□ 0.74
SHH-201ENST00000297261 RPRD2Q5VT52 1461 aaKnown RBP19.67■□□□□ 0.74
SHH-201ENST00000297261 MYH16Q9H6N6 1097 aa19.66■□□□□ 0.74
SHH-201ENST00000297261 ZBED9Q6R2W3 1325 aa19.66■□□□□ 0.74
SHH-201ENST00000297261 CD109Q6YHK3 1445 aa19.66■□□□□ 0.74
SHH-201ENST00000297261 IL27Q8NEV9 243 aa19.66■□□□□ 0.74
SHH-201ENST00000297261 ADGRL1O94910 1474 aa19.66■□□□□ 0.74
SHH-201ENST00000297261 CFAP53Q96M91 514 aa19.65■□□□□ 0.74
SHH-201ENST00000297261 PLCH2O75038 1416 aa19.65■□□□□ 0.74
SHH-201ENST00000297261 MSH5O43196 834 aa19.65■□□□□ 0.74
SHH-201ENST00000297261 SYCP2Q9BX26 1530 aa19.65■□□□□ 0.74
SHH-201ENST00000297261 HSP90AB1P08238 724 aaKnown RBP19.64■□□□□ 0.73
SHH-201ENST00000297261 ABCC2Q92887 1545 aa19.64■□□□□ 0.73
SHH-201ENST00000297261 FANCAO15360 1455 aa19.63■□□□□ 0.73
SHH-201ENST00000297261 DNMT1P26358 1616 aaKnown RBP19.63■□□□□ 0.73
SHH-201ENST00000297261 PLIN1O60240 522 aa19.63■□□□□ 0.73
SHH-201ENST00000297261 NLRP13Q86W25 1043 aa19.62■□□□□ 0.73
SHH-201ENST00000297261 MORC1Q86VD1 984 aa19.61■□□□□ 0.73
SHH-201ENST00000297261 VGFO15240 615 aaPredicted RBP19.61■□□□□ 0.73
SHH-201ENST00000297261 HDGFP51858 240 aaKnown RBP19.61■□□□□ 0.73
SHH-201ENST00000297261 ARID3AQ99856 593 aa19.6■□□□□ 0.73
SHH-201ENST00000297261 HSCBQ8IWL3 235 aa19.6■□□□□ 0.73
SHH-201ENST00000297261 ASXL2Q76L83 1435 aa19.6■□□□□ 0.73
SHH-201ENST00000297261 C11orf95C9JLR9 678 aaPredicted RBP19.59■□□□□ 0.73
SHH-201ENST00000297261 CFAP70Q5T0N1 1121 aa19.59■□□□□ 0.73
SHH-201ENST00000297261 STAC3Q96MF2 364 aa19.59■□□□□ 0.73
SHH-201ENST00000297261 MYBBP1AQ9BQG0 1328 aaKnown RBP19.59■□□□□ 0.73
SHH-201ENST00000297261 ABCA8O94911 1581 aa19.58■□□□□ 0.72
SHH-201ENST00000297261 PRKCSHP14314 528 aaPredicted RBP19.57■□□□□ 0.72
SHH-201ENST00000297261 WDR7Q9Y4E6 1490 aa19.56■□□□□ 0.72
SHH-201ENST00000297261 MSNP26038 577 aaKnown RBP19.56■□□□□ 0.72
SHH-201ENST00000297261 VSIG10Q8N0Z9 540 aa19.56■□□□□ 0.72
SHH-201ENST00000297261 GOLGA6L3A6NEY3 463 aa19.56■□□□□ 0.72
SHH-201ENST00000297261 PLCB2Q00722 1185 aa19.56■□□□□ 0.72
SHH-201ENST00000297261 TRAPPC8Q9Y2L5 1435 aa19.56■□□□□ 0.72
SHH-201ENST00000297261 RSPH6AQ9H0K4 717 aa19.55■□□□□ 0.72
SHH-201ENST00000297261 RRP1P56182 461 aaKnown RBP19.54■□□□□ 0.72
SHH-201ENST00000297261 CHD1O14646 1710 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms