RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PANK3Q9H999 370 aa28.6■■■□□ 2.17
TRIM28-201ENST00000253024 SMG6Q86US8 1419 aaKnown RBP28.6■■■□□ 2.17
TRIM28-201ENST00000253024 FANCIQ9NVI1 1328 aa28.6■■■□□ 2.17
TRIM28-201ENST00000253024 ERICH6BQ5W0A0 696 aa28.59■■■□□ 2.17
TRIM28-201ENST00000253024 RALGAPBQ86X10 1494 aa28.58■■■□□ 2.17
TRIM28-201ENST00000253024 PAK3O75914 559 aaPredicted RBP28.58■■■□□ 2.17
TRIM28-201ENST00000253024 CROCC2H7BZ55 1655 aa28.56■■■□□ 2.16
TRIM28-201ENST00000253024 SENP3Q9H4L4 574 aaPredicted RBP28.56■■■□□ 2.16
TRIM28-201ENST00000253024 ABCA8O94911 1581 aa28.56■■■□□ 2.16
TRIM28-201ENST00000253024 ARHGAP5Q13017 1502 aa28.54■■■□□ 2.16
TRIM28-201ENST00000253024 DISP3Q9P2K9 1392 aa28.54■■■□□ 2.16
TRIM28-201ENST00000253024 PLEKHH2Q8IVE3 1493 aa28.54■■■□□ 2.16
TRIM28-201ENST00000253024 SYCP2Q9BX26 1530 aa28.54■■■□□ 2.16
TRIM28-201ENST00000253024 FAM135AQ9P2D6 1515 aa28.52■■■□□ 2.16
TRIM28-201ENST00000253024 AFAP1Q8N556 730 aa28.51■■■□□ 2.15
TRIM28-201ENST00000253024 KTN1Q86UP2 1357 aaKnown RBP28.51■■■□□ 2.15
TRIM28-201ENST00000253024 CCDC141Q6ZP82 1450 aa28.5■■■□□ 2.15
TRIM28-201ENST00000253024 RALBP1Q15311 655 aa28.5■■■□□ 2.15
TRIM28-201ENST00000253024 RCAN3Q9UKA8 241 aa28.5■■■□□ 2.15
TRIM28-201ENST00000253024 UHRF1BP1Q6BDS2 1440 aa28.5■■■□□ 2.15
TRIM28-201ENST00000253024 ADCY10Q96PN6 1610 aa28.5■■■□□ 2.15
TRIM28-201ENST00000253024 NLRP13Q86W25 1043 aa28.49■■■□□ 2.15
TRIM28-201ENST00000253024 SAMD9LQ8IVG5 1584 aa28.48■■■□□ 2.15
TRIM28-201ENST00000253024 RRP1P56182 461 aaKnown RBP28.46■■■□□ 2.15
TRIM28-201ENST00000253024 ARID4BQ4LE39 1312 aaPredicted RBP28.46■■■□□ 2.15
TRIM28-201ENST00000253024 ERCC6L2Q5T890 1561 aa28.45■■■□□ 2.14
TRIM28-201ENST00000253024 POLR1AO95602 1720 aaPredicted RBP28.45■■■□□ 2.14
TRIM28-201ENST00000253024 PRAG1Q86YV5 1406 aa28.44■■■□□ 2.14
TRIM28-201ENST00000253024 PLA2R1Q13018 1463 aa28.44■■■□□ 2.14
TRIM28-201ENST00000253024 PER1O15534 1290 aaPredicted RBP28.44■■■□□ 2.14
TRIM28-201ENST00000253024 TESK2Q96S53 571 aa28.44■■■□□ 2.14
TRIM28-201ENST00000253024 BCL11AQ9H165 835 aa28.42■■■□□ 2.14
TRIM28-201ENST00000253024 BRD4O60885 1362 aaPredicted RBP28.42■■■□□ 2.14
TRIM28-201ENST00000253024 SHANK2Q9UPX8 1470 aa28.41■■■□□ 2.14
TRIM28-201ENST00000253024 A2MP01023 1474 aa28.4■■■□□ 2.14
TRIM28-201ENST00000253024 NOP58Q9Y2X3 529 aaKnown RBP28.39■■■□□ 2.14
TRIM28-201ENST00000253024 TMF1P82094 1093 aa28.38■■■□□ 2.13
TRIM28-201ENST00000253024 TTC37Q6PGP7 1564 aa28.38■■■□□ 2.13
TRIM28-201ENST00000253024 CDC42BPBQ9Y5S2 1711 aa28.38■■■□□ 2.13
TRIM28-201ENST00000253024 ADAMTS8Q9UP79 889 aa28.37■■■□□ 2.13
TRIM28-201ENST00000253024 LRPPRCP42704 1394 aaKnown RBP28.36■■■□□ 2.13
TRIM28-201ENST00000253024 CCDC146Q8IYE0 955 aa28.35■■■□□ 2.13
TRIM28-201ENST00000253024 RNF123Q5XPI4 1314 aa28.35■■■□□ 2.13
TRIM28-201ENST00000253024 KDM5DQ9BY66 1539 aa28.34■■■□□ 2.13
TRIM28-201ENST00000253024 ARHGEF12Q9NZN5 1544 aa28.34■■■□□ 2.13
TRIM28-201ENST00000253024 C20orf194Q5TEA3 1177 aa28.34■■■□□ 2.13
TRIM28-201ENST00000253024 ANP32AP39687 249 aaKnown RBP28.33■■■□□ 2.13
TRIM28-201ENST00000253024 RSPH4AQ5TD94 716 aa28.32■■■□□ 2.12
TRIM28-201ENST00000253024 CHGAP10645 457 aaKnown RBP28.32■■■□□ 2.12
TRIM28-201ENST00000253024 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.3■■■□□ 2.122e-7■■■□□ 18.9
TRIM28-201ENST00000253024 EFCAB2Q5VUJ9 269 aa28.3■■■□□ 2.12
TRIM28-201ENST00000253024 CRBNQ96SW2 442 aa28.3■■■□□ 2.12
TRIM28-201ENST00000253024 KNSTRNQ9Y448 316 aa28.3■■■□□ 2.12
TRIM28-201ENST00000253024 PARD3Q8TEW0 1356 aa28.3■■■□□ 2.12
TRIM28-201ENST00000253024 ERBINQ96RT1 1412 aa28.29■■■□□ 2.12
TRIM28-201ENST00000253024 TRAPPC8Q9Y2L5 1435 aa28.28■■■□□ 2.12
TRIM28-201ENST00000253024 SPAG9O60271 1321 aaKnown RBP28.27■■■□□ 2.12
TRIM28-201ENST00000253024 KIF3BO15066 747 aa28.26■■■□□ 2.12
TRIM28-201ENST00000253024 TNNT2P45379 298 aaPredicted RBP28.26■■■□□ 2.12
TRIM28-201ENST00000253024 WDR43Q15061 677 aaKnown RBP eCLIP28.24■■■□□ 2.112e-6■■□□□ 11.4
TRIM28-201ENST00000253024 ARHGEF5Q12774 1597 aa28.23■■■□□ 2.11
TRIM28-201ENST00000253024 ZBTB47Q9UFB7 747 aaPredicted RBP28.23■■■□□ 2.11
TRIM28-201ENST00000253024 LAS1LQ9Y4W2 734 aaKnown RBP28.23■■■□□ 2.11
TRIM28-201ENST00000253024 PREX2Q70Z35 1606 aa28.23■■■□□ 2.11
TRIM28-201ENST00000253024 CFAP70Q5T0N1 1121 aa28.2■■■□□ 2.1
TRIM28-201ENST00000253024 CHD1O14646 1710 aa28.2■■■□□ 2.1
TRIM28-201ENST00000253024 TRPM1Q7Z4N2 1603 aa28.19■■■□□ 2.1
TRIM28-201ENST00000253024 NUTM2DQ5VT03 806 aaPredicted RBP28.19■■■□□ 2.1
TRIM28-201ENST00000253024 PPP2R1AP30153 589 aa28.18■■■□□ 2.1
TRIM28-201ENST00000253024 DEKP35659 375 aaKnown RBP28.18■■■□□ 2.1
TRIM28-201ENST00000253024 IPO9Q96P70 1041 aaKnown RBP28.18■■■□□ 2.1
TRIM28-201ENST00000253024 COL17A1Q9UMD9 1497 aaPredicted RBP28.17■■■□□ 2.1
TRIM28-201ENST00000253024 PDE4AP27815 886 aa28.15■■■□□ 2.1
TRIM28-201ENST00000253024 NEUROD2Q15784 382 aa28.15■■■□□ 2.1
TRIM28-201ENST00000253024 MAGI2Q86UL8 1455 aa28.11■■■□□ 2.09
TRIM28-201ENST00000253024 SLC4A3P48751 1232 aa28.1■■■□□ 2.09
TRIM28-201ENST00000253024 GPRASP1Q5JY77 1395 aa28.1■■■□□ 2.09
TRIM28-201ENST00000253024 PLEKHH1Q9ULM0 1364 aa28.1■■■□□ 2.09
TRIM28-201ENST00000253024 APAF1O14727 1248 aa28.09■■■□□ 2.09
TRIM28-201ENST00000253024 SPINK5Q9NQ38 1064 aaPredicted RBP28.08■■■□□ 2.09
TRIM28-201ENST00000253024 PDE3BQ13370 1112 aa28.08■■■□□ 2.09
TRIM28-201ENST00000253024 AMER1Q5JTC6 1135 aaPredicted RBP28.07■■■□□ 2.08
TRIM28-201ENST00000253024 RGS3P49796 1198 aa28.07■■■□□ 2.08
TRIM28-201ENST00000253024 ADGRF5Q8IZF2 1346 aa28.06■■■□□ 2.08
TRIM28-201ENST00000253024 PLCH2O75038 1416 aa28.06■■■□□ 2.08
TRIM28-201ENST00000253024 SCAPERQ9BY12 1400 aa28.06■■■□□ 2.08
TRIM28-201ENST00000253024 E9PCH4 1651 aa28.05■■■□□ 2.08
TRIM28-201ENST00000253024 ABCC2Q92887 1545 aa28.04■■■□□ 2.08
TRIM28-201ENST00000253024 GGT6Q6P531 493 aa28.04■■■□□ 2.08
TRIM28-201ENST00000253024 TRAK1Q9UPV9 953 aa28.04■■■□□ 2.08
TRIM28-201ENST00000253024 RRP7AQ9Y3A4 280 aaKnown RBP28.04■■■□□ 2.08
TRIM28-201ENST00000253024 MYO5CQ9NQX4 1742 aa28.02■■■□□ 2.08
TRIM28-201ENST00000253024 DMRT2Q9Y5R5 561 aa28.02■■■□□ 2.08
TRIM28-201ENST00000253024 SAFB2Q14151 953 aaKnown RBP eCLIP28.02■■■□□ 2.08
TRIM28-201ENST00000253024 TMEM132EQ6IEE7 984 aa28.02■■■□□ 2.08
TRIM28-201ENST00000253024 PRDM15P57071 1507 aaPredicted RBP28.02■■■□□ 2.08
TRIM28-201ENST00000253024 DUOX2Q9NRD8 1548 aa28.02■■■□□ 2.08
TRIM28-201ENST00000253024 UGGT1Q9NYU2 1555 aa28■■■□□ 2.07
TRIM28-201ENST00000253024 BCAR3O75815 825 aa28■■■□□ 2.07
TRIM28-201ENST00000253024 RTL5Q5HYW3 569 aaPredicted RBP28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms