RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 SUPT6HQ7KZ85 1726 aaKnown RBP5.88□□□□□ -1.47
VPS13C-201ENST00000249837 ITPRIPQ8IWB1 547 aa5.88□□□□□ -1.47
VPS13C-201ENST00000249837 EFCAB5A4FU69 1503 aa5.88□□□□□ -1.47
VPS13C-201ENST00000249837 ZBTB7CA1YPR0 619 aa5.88□□□□□ -1.47
VPS13C-201ENST00000249837 L1TD1Q5T7N2 865 aaKnown RBP5.88□□□□□ -1.47
VPS13C-201ENST00000249837 TRAK1Q9UPV9 953 aa5.88□□□□□ -1.47
VPS13C-201ENST00000249837 CCDC144AA2RUR9 1427 aa5.87□□□□□ -1.47
VPS13C-201ENST00000249837 SMG6Q86US8 1419 aaKnown RBP5.87□□□□□ -1.47
VPS13C-201ENST00000249837 BIVM-ERCC5R4GMW8 1640 aa5.87□□□□□ -1.47
VPS13C-201ENST00000249837 MFAP1P55081 439 aaKnown RBP5.87□□□□□ -1.47
VPS13C-201ENST00000249837 FAM161AQ3B820 660 aa5.87□□□□□ -1.47
VPS13C-201ENST00000249837 AQRO60306 1485 aaKnown RBP eCLIP5.87□□□□□ -1.471e-6■■■■■ 33.2
VPS13C-201ENST00000249837 CDK13Q14004 1512 aaKnown RBP5.87□□□□□ -1.47
VPS13C-201ENST00000249837 TOPBP1Q92547 1522 aa5.87□□□□□ -1.47
VPS13C-201ENST00000249837 IL27Q8NEV9 243 aa5.87□□□□□ -1.47
VPS13C-201ENST00000249837 SPAG9O60271 1321 aaKnown RBP5.87□□□□□ -1.47
VPS13C-201ENST00000249837 SOX12O15370 315 aa5.87□□□□□ -1.47
VPS13C-201ENST00000249837 PTPN23Q9H3S7 1636 aa5.87□□□□□ -1.47
VPS13C-201ENST00000249837 KIF3BO15066 747 aa5.87□□□□□ -1.47
VPS13C-201ENST00000249837 C14orf37Q86TY3 774 aa5.87□□□□□ -1.47
VPS13C-201ENST00000249837 BRD4O60885 1362 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-201ENST00000249837 GOLGA6L22H0YM25 854 aa5.86□□□□□ -1.47
VPS13C-201ENST00000249837 NUTM2DQ5VT03 806 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-201ENST00000249837 POLA1P09884 1462 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-201ENST00000249837 PTMAP06454 111 aaKnown RBP5.86□□□□□ -1.47
VPS13C-201ENST00000249837 SMC4Q9NTJ3 1288 aa5.86□□□□□ -1.47
VPS13C-201ENST00000249837 GSE1Q14687 1217 aa5.86□□□□□ -1.47
VPS13C-201ENST00000249837 PANK1Q8TE04 598 aa5.86□□□□□ -1.47
VPS13C-201ENST00000249837 BRPF3Q9ULD4 1205 aa5.85□□□□□ -1.47
VPS13C-201ENST00000249837 PMFBP1Q8TBY8 1022 aa5.85□□□□□ -1.47
VPS13C-201ENST00000249837 KIAA1107Q9UPP5 1409 aa5.85□□□□□ -1.47
VPS13C-201ENST00000249837 ADAMTS8Q9UP79 889 aa5.85□□□□□ -1.47
VPS13C-201ENST00000249837 RSPH4AQ5TD94 716 aa5.85□□□□□ -1.47
VPS13C-201ENST00000249837 ANKRD30BQ9BXX2 1392 aa5.85□□□□□ -1.47
VPS13C-201ENST00000249837 ANKRD50Q9ULJ7 1429 aa5.84□□□□□ -1.47
VPS13C-201ENST00000249837 PTPRKQ15262 1439 aa5.84□□□□□ -1.47
VPS13C-201ENST00000249837 E9PSI1 815 aa5.84□□□□□ -1.47
VPS13C-201ENST00000249837 PNNQ9H307 717 aaKnown RBP5.84□□□□□ -1.47
VPS13C-201ENST00000249837 EHBP1L1Q8N3D4 1523 aa5.84□□□□□ -1.47
VPS13C-201ENST00000249837 PRG4Q92954 1404 aaPredicted RBP5.84□□□□□ -1.47
VPS13C-201ENST00000249837 IPO8O15397 1037 aaKnown RBP5.84□□□□□ -1.47
VPS13C-201ENST00000249837 PEG3Q9GZU2 1588 aa5.84□□□□□ -1.47
VPS13C-201ENST00000249837 MLECQ14165 292 aa5.84□□□□□ -1.47
VPS13C-201ENST00000249837 USP35Q9P2H5 1018 aa5.84□□□□□ -1.47
VPS13C-201ENST00000249837 PTPRGP23470 1445 aa5.84□□□□□ -1.47
VPS13C-201ENST00000249837 HMGXB3Q12766 1538 aa5.84□□□□□ -1.48
VPS13C-201ENST00000249837 MAP3K1Q13233 1512 aa5.84□□□□□ -1.48
VPS13C-201ENST00000249837 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.84□□□□□ -1.48
VPS13C-201ENST00000249837 BACH2Q9BYV9 841 aa5.83□□□□□ -1.48
VPS13C-201ENST00000249837 PPP2R1AP30153 589 aa5.83□□□□□ -1.48
VPS13C-201ENST00000249837 NFKBIBQ15653 356 aa5.83□□□□□ -1.48
VPS13C-201ENST00000249837 FRAT2O75474 233 aaPredicted RBP5.83□□□□□ -1.48
VPS13C-201ENST00000249837 DAPK1P53355 1430 aa5.83□□□□□ -1.48
VPS13C-201ENST00000249837 CFAP65Q6ZU64 1925 aaKnown RBP5.83□□□□□ -1.48
VPS13C-201ENST00000249837 HECW1Q76N89 1606 aa5.83□□□□□ -1.48
VPS13C-201ENST00000249837 DNMBPQ6XZF7 1577 aa5.83□□□□□ -1.48
VPS13C-201ENST00000249837 NCOA1Q15788 1441 aa5.82□□□□□ -1.48
VPS13C-201ENST00000249837 ELL2O00472 640 aaPredicted RBP5.82□□□□□ -1.48
VPS13C-201ENST00000249837 C20orf194Q5TEA3 1177 aa5.82□□□□□ -1.48
VPS13C-201ENST00000249837 FOXD4L5Q5VV16 416 aaPredicted RBP5.82□□□□□ -1.48
VPS13C-201ENST00000249837 FOXD4L4Q8WXT5 416 aaPredicted RBP5.82□□□□□ -1.48
VPS13C-201ENST00000249837 CASC1Q6TDU7 716 aa5.82□□□□□ -1.48
VPS13C-201ENST00000249837 CC2D2AQ9P2K1 1620 aa5.82□□□□□ -1.48
VPS13C-201ENST00000249837 GBP4Q96PP9 640 aa5.82□□□□□ -1.48
VPS13C-201ENST00000249837 CGNL1Q0VF96 1302 aa5.82□□□□□ -1.48
VPS13C-201ENST00000249837 GOLGA6L3A6NEY3 463 aa5.82□□□□□ -1.48
VPS13C-201ENST00000249837 ANO8Q9HCE9 1232 aaPredicted RBP5.82□□□□□ -1.48
VPS13C-201ENST00000249837 DNAJC5BQ9UF47 199 aa5.82□□□□□ -1.48
VPS13C-201ENST00000249837 MIA2Q96PC5 1412 aa5.82□□□□□ -1.48
VPS13C-201ENST00000249837 EPRSP07814 1512 aaKnown RBP5.82□□□□□ -1.48
VPS13C-201ENST00000249837 C9orf84Q5VXU9 1444 aa5.81□□□□□ -1.48
VPS13C-201ENST00000249837 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.81□□□□□ -1.484e-6■■■□□ 17.3
VPS13C-201ENST00000249837 BCAR3O75815 825 aa5.81□□□□□ -1.48
VPS13C-201ENST00000249837 DNTTIP2Q5QJE6 756 aaKnown RBP5.81□□□□□ -1.48
VPS13C-201ENST00000249837 MINK1Q8N4C8 1332 aaPredicted RBP5.81□□□□□ -1.48
VPS13C-201ENST00000249837 EIF3AQ14152 1382 aaKnown RBP5.81□□□□□ -1.48
VPS13C-201ENST00000249837 ZKSCAN2Q63HK3 967 aa5.8□□□□□ -1.48
VPS13C-201ENST00000249837 HDGFL2Q7Z4V5 671 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-201ENST00000249837 TMEM132EQ6IEE7 984 aa5.8□□□□□ -1.48
VPS13C-201ENST00000249837 ARID3AQ99856 593 aa5.8□□□□□ -1.48
VPS13C-201ENST00000249837 ERBINQ96RT1 1412 aa5.8□□□□□ -1.48
VPS13C-201ENST00000249837 PLCB2Q00722 1185 aa5.8□□□□□ -1.48
VPS13C-201ENST00000249837 LNPKQ9C0E8 428 aa5.8□□□□□ -1.48
VPS13C-201ENST00000249837 ANKRD45Q5TZF3 282 aa5.8□□□□□ -1.48
VPS13C-201ENST00000249837 ABCC5O15440 1437 aa5.8□□□□□ -1.48
VPS13C-201ENST00000249837 GRIN2BQ13224 1484 aa5.8□□□□□ -1.48
VPS13C-201ENST00000249837 CHMP4BQ9H444 224 aaKnown RBP5.79□□□□□ -1.48
VPS13C-201ENST00000249837 NOL8Q76FK4 1167 aaKnown RBP5.79□□□□□ -1.48
VPS13C-201ENST00000249837 TROQ12816 1431 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-201ENST00000249837 CFAP70Q5T0N1 1121 aa5.79□□□□□ -1.48
VPS13C-201ENST00000249837 CUL7Q14999 1698 aa5.79□□□□□ -1.48
VPS13C-201ENST00000249837 ABCA10Q8WWZ4 1543 aa5.79□□□□□ -1.48
VPS13C-201ENST00000249837 OS9Q13438 667 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-201ENST00000249837 RUNDC1Q96C34 613 aa5.79□□□□□ -1.48
VPS13C-201ENST00000249837 KCNJ4P48050 445 aa5.78□□□□□ -1.48
VPS13C-201ENST00000249837 WASHC2CQ9Y4E1 1318 aa5.78□□□□□ -1.48
VPS13C-201ENST00000249837 KAT6BQ8WYB5 2073 aa5.78□□□□□ -1.48
VPS13C-201ENST00000249837 AFAP1Q8N556 730 aa5.78□□□□□ -1.48
VPS13C-201ENST00000249837 CFAP43Q8NDM7 1665 aa5.78□□□□□ -1.48
VPS13C-201ENST00000249837 C22orf23Q9BZE7 217 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms