RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 PPP1R9BQ96SB3 815 aa16.58■□□□□ 0.25
MSH2-201ENST00000233146 MIA2Q96PC5 1412 aa16.58■□□□□ 0.24
MSH2-201ENST00000233146 DYNC1I1O14576 645 aa16.58■□□□□ 0.24
MSH2-201ENST00000233146 CCDC94Q9BW85 323 aaPredicted RBP16.58■□□□□ 0.24
MSH2-201ENST00000233146 R3HCC1Q9Y3T6 440 aaKnown RBP16.58■□□□□ 0.24
MSH2-201ENST00000233146 FGD6Q6ZV73 1430 aa16.57■□□□□ 0.24
MSH2-201ENST00000233146 TBC1D2Q9BYX2 928 aa16.57■□□□□ 0.24
MSH2-201ENST00000233146 TNNT2P45379 298 aaPredicted RBP16.57■□□□□ 0.24
MSH2-201ENST00000233146 GTPBP4Q9BZE4 634 aaKnown RBP16.57■□□□□ 0.24
MSH2-201ENST00000233146 UQCRHLA0A096LP55 91 aa16.56■□□□□ 0.24
MSH2-201ENST00000233146 UQCRHP07919 91 aa16.56■□□□□ 0.24
MSH2-201ENST00000233146 CCDC173Q0VFZ6 552 aa16.56■□□□□ 0.24
MSH2-201ENST00000233146 GAS2L3Q86XJ1 694 aa16.56■□□□□ 0.24
MSH2-201ENST00000233146 HECW1Q76N89 1606 aa16.56■□□□□ 0.24
MSH2-201ENST00000233146 ZNF830Q96NB3 372 aaPredicted RBP16.55■□□□□ 0.24
MSH2-201ENST00000233146 MYBBP1AQ9BQG0 1328 aaKnown RBP16.54■□□□□ 0.24
MSH2-201ENST00000233146 BCORL1Q5H9F3 1711 aa16.54■□□□□ 0.24
MSH2-201ENST00000233146 MSNP26038 577 aaKnown RBP16.53■□□□□ 0.24
MSH2-201ENST00000233146 DDX11L8A8MPP1 907 aa16.53■□□□□ 0.24
MSH2-201ENST00000233146 ANP32BQ92688 251 aaKnown RBP16.53■□□□□ 0.24
MSH2-201ENST00000233146 ARID3AQ99856 593 aa16.53■□□□□ 0.24
MSH2-201ENST00000233146 CHMP5Q9NZZ3 219 aa16.53■□□□□ 0.24
MSH2-201ENST00000233146 LETM1O95202 739 aaPredicted RBP16.52■□□□□ 0.24
MSH2-201ENST00000233146 FOXD1Q16676 465 aa16.52■□□□□ 0.23
MSH2-201ENST00000233146 KIF15Q9NS87 1388 aa16.51■□□□□ 0.23
MSH2-201ENST00000233146 PCF11O94913 1555 aaKnown RBP16.51■□□□□ 0.23
MSH2-201ENST00000233146 CUX1P39880 1505 aa16.51■□□□□ 0.23
MSH2-201ENST00000233146 ROCK2O75116 1388 aaKnown RBP16.51■□□□□ 0.23
MSH2-201ENST00000233146 ZNF500O60304 480 aaPredicted RBP16.5■□□□□ 0.23
MSH2-201ENST00000233146 TEX14Q8IWB6 1497 aa16.5■□□□□ 0.23
MSH2-201ENST00000233146 RALBP1Q15311 655 aa16.49■□□□□ 0.23
MSH2-201ENST00000233146 TBC1D32Q96NH3 1257 aa16.49■□□□□ 0.23
MSH2-201ENST00000233146 KIF27Q86VH2 1401 aa16.49■□□□□ 0.23
MSH2-201ENST00000233146 HS1BP3Q53T59 392 aa16.47■□□□□ 0.23
MSH2-201ENST00000233146 VGLL3A8MV65 326 aa16.47■□□□□ 0.23
MSH2-201ENST00000233146 FTSJ3Q8IY81 847 aaKnown RBP16.47■□□□□ 0.23
MSH2-201ENST00000233146 TAF3Q5VWG9 929 aa16.46■□□□□ 0.23
MSH2-201ENST00000233146 RPRD2Q5VT52 1461 aaKnown RBP16.46■□□□□ 0.23
MSH2-201ENST00000233146 PLCD3Q8N3E9 789 aa16.45■□□□□ 0.22
MSH2-201ENST00000233146 POLR3GLQ9BT43 218 aa16.45■□□□□ 0.22
MSH2-201ENST00000233146 INSRP06213 1382 aa16.45■□□□□ 0.22
MSH2-201ENST00000233146 SPRYD3Q8NCJ5 442 aa16.45■□□□□ 0.22
MSH2-201ENST00000233146 NOL7Q9UMY1 257 aaKnown RBP16.44■□□□□ 0.22
MSH2-201ENST00000233146 NASPP49321 788 aaPredicted RBP16.44■□□□□ 0.22
MSH2-201ENST00000233146 DNAJC5BQ9UF47 199 aa16.44■□□□□ 0.22
MSH2-201ENST00000233146 MAPK8IP3Q9UPT6 1336 aa16.43■□□□□ 0.22
MSH2-201ENST00000233146 SASS6Q6UVJ0 657 aa16.43■□□□□ 0.22
MSH2-201ENST00000233146 BICRAQ9NZM4 1560 aa16.43■□□□□ 0.22
MSH2-201ENST00000233146 MPHOSPH9Q99550 1183 aa16.42■□□□□ 0.22
MSH2-201ENST00000233146 ZNF692Q9BU19 519 aaPredicted RBP16.42■□□□□ 0.22
MSH2-201ENST00000233146 UPF2Q9HAU5 1272 aaKnown RBP16.42■□□□□ 0.22
MSH2-201ENST00000233146 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.42■□□□□ 0.22
MSH2-201ENST00000233146 PLEKHH2Q8IVE3 1493 aa16.42■□□□□ 0.22
MSH2-201ENST00000233146 CSPP1Q1MSJ5 1256 aa16.42■□□□□ 0.22
MSH2-201ENST00000233146 ZMYM4Q5VZL5 1548 aa16.42■□□□□ 0.22
MSH2-201ENST00000233146 BLMP54132 1417 aaPredicted RBP16.42■□□□□ 0.22
MSH2-201ENST00000233146 XPCQ01831 940 aaPredicted RBP16.41■□□□□ 0.22
MSH2-201ENST00000233146 NLRP13Q86W25 1043 aa16.41■□□□□ 0.22
MSH2-201ENST00000233146 GCC2Q8IWJ2 1684 aa16.41■□□□□ 0.22
MSH2-201ENST00000233146 SKOR2Q2VWA4 1001 aaPredicted RBP16.41■□□□□ 0.22
MSH2-201ENST00000233146 EIF3AQ14152 1382 aaKnown RBP16.41■□□□□ 0.22
MSH2-201ENST00000233146 USP47Q96K76 1375 aa16.41■□□□□ 0.22
MSH2-201ENST00000233146 FYCO1Q9BQS8 1478 aa16.39■□□□□ 0.21
MSH2-201ENST00000233146 THOC2Q8NI27 1593 aaKnown RBP16.39■□□□□ 0.21
MSH2-201ENST00000233146 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.39■□□□□ 0.21
MSH2-201ENST00000233146 ANKRD30BQ9BXX2 1392 aa16.39■□□□□ 0.21
MSH2-201ENST00000233146 IGHDP01880 384 aa16.39■□□□□ 0.21
MSH2-201ENST00000233146 CBX1P83916 185 aa16.38■□□□□ 0.21
MSH2-201ENST00000233146 VGFO15240 615 aaPredicted RBP16.37■□□□□ 0.21
MSH2-201ENST00000233146 DDIT3P35638 169 aa16.37■□□□□ 0.21
MSH2-201ENST00000233146 SCAPERQ9BY12 1400 aa16.37■□□□□ 0.21
MSH2-201ENST00000233146 CTTNBP2Q8WZ74 1663 aa16.37■□□□□ 0.21
MSH2-201ENST00000233146 KDM5CP41229 1560 aa16.37■□□□□ 0.21
MSH2-201ENST00000233146 CCDC144AA2RUR9 1427 aa16.36■□□□□ 0.21
MSH2-201ENST00000233146 KDM6BO15054 1643 aa16.36■□□□□ 0.21
MSH2-201ENST00000233146 IBTKQ9P2D0 1353 aaPredicted RBP16.35■□□□□ 0.21
MSH2-201ENST00000233146 CHRM1P11229 460 aaPredicted RBP16.35■□□□□ 0.21
MSH2-201ENST00000233146 PTMSP20962 102 aa16.35■□□□□ 0.21
MSH2-201ENST00000233146 ZFP91Q96JP5 570 aaPredicted RBP16.35■□□□□ 0.21
MSH2-201ENST00000233146 ZMYM3Q14202 1370 aa16.35■□□□□ 0.21
MSH2-201ENST00000233146 PARD3Q8TEW0 1356 aa16.35■□□□□ 0.21
MSH2-201ENST00000233146 MCM5P33992 734 aa16.35■□□□□ 0.21
MSH2-201ENST00000233146 ATP1B4Q9UN42 357 aaPredicted RBP16.35■□□□□ 0.21
MSH2-201ENST00000233146 NCOA3Q9Y6Q9 1424 aa16.35■□□□□ 0.21
MSH2-201ENST00000233146 PDLIM2Q96JY6 352 aa16.34■□□□□ 0.21
MSH2-201ENST00000233146 ZKSCAN5Q9Y2L8 839 aa16.34■□□□□ 0.21
MSH2-201ENST00000233146 CASKIN1Q8WXD9 1431 aa16.34■□□□□ 0.21
MSH2-201ENST00000233146 DUSP27Q5VZP5 1158 aa16.34■□□□□ 0.21
MSH2-201ENST00000233146 TEX2Q8IWB9 1127 aa16.34■□□□□ 0.21
MSH2-201ENST00000233146 RRP7BPQ9NSQ0 103 aa16.34■□□□□ 0.21
MSH2-201ENST00000233146 E9PCH4 1651 aa16.34■□□□□ 0.21
MSH2-201ENST00000233146 ZBTB22O15209 634 aa16.34■□□□□ 0.21
MSH2-201ENST00000233146 ATP2B3Q16720 1220 aa16.33■□□□□ 0.2
MSH2-201ENST00000233146 ZNF710Q8N1W2 664 aa16.33■□□□□ 0.2
MSH2-201ENST00000233146 TNPO1Q92973 898 aaKnown RBP16.33■□□□□ 0.2
MSH2-201ENST00000233146 PANK3Q9H999 370 aa16.33■□□□□ 0.2
MSH2-201ENST00000233146 MYRIPQ8NFW9 859 aa16.32■□□□□ 0.2
MSH2-201ENST00000233146 RTEL1-TNFRSF6BF6WH68 1400 aa16.32■□□□□ 0.2
MSH2-201ENST00000233146 CDK11BP21127 795 aaKnown RBP16.32■□□□□ 0.2
MSH2-201ENST00000233146 GBP4Q96PP9 640 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms