RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeastyeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB5YLR260W POS5Q06892 414 aa3.34□□□□□ -1.87
LCB5YLR260W YDR018CQ12185 396 aa3.34□□□□□ -1.87
LCB5YLR260W MSL5Q12186 476 aaKnown RBP RIP-Chip data3.34□□□□□ -1.87not detected
LCB5YLR260W YDR262WQ12331 272 aa3.34□□□□□ -1.87
LCB5YLR260W EFG1Q3E705 233 aaKnown RBP3.34□□□□□ -1.87
LCB5YLR260W HRP1Q99383 534 aaKnown RBP3.34□□□□□ -1.87
LCB5YLR260W YLR462WO13556 202 aa3.34□□□□□ -1.88
LCB5YLR260W SPS4P09937 338 aa3.34□□□□□ -1.88
LCB5YLR260W NFT1P0CE68 1218 aa3.34□□□□□ -1.88
LCB5YLR260W RPL18AP0CX49 186 aaKnown RBP3.34□□□□□ -1.88
LCB5YLR260W RPL18BP0CX50 186 aaKnown RBP3.34□□□□□ -1.88
LCB5YLR260W CBF1P17106 351 aa3.34□□□□□ -1.88
LCB5YLR260W YSR3P23501 404 aa3.34□□□□□ -1.88
LCB5YLR260W GPI12P23797 304 aa3.34□□□□□ -1.88
LCB5YLR260W DEG1P31115 442 aaKnown RBP3.34□□□□□ -1.88
LCB5YLR260W VPH2P32341 215 aa3.34□□□□□ -1.88
LCB5YLR260W ECM25P32525 599 aa3.34□□□□□ -1.88
LCB5YLR260W PRP18P33411 251 aaPredicted RBP3.34□□□□□ -1.88
LCB5YLR260W COS9P36034 407 aa3.34□□□□□ -1.88
LCB5YLR260W NTR2P36118 322 aaPredicted RBP3.34□□□□□ -1.88
LCB5YLR260W RIB1P38066 345 aa3.34□□□□□ -1.88
LCB5YLR260W YBR259WP38338 688 aa3.34□□□□□ -1.88
LCB5YLR260W RCK2P38623 610 aa3.34□□□□□ -1.88
LCB5YLR260W YHL049CP38722 271 aa3.34□□□□□ -1.88
LCB5YLR260W BIG1P38813 335 aa3.34□□□□□ -1.88
LCB5YLR260W ARO9P38840 513 aaPredicted RBP3.34□□□□□ -1.88
LCB5YLR260W YHR177WP38867 453 aa3.34□□□□□ -1.88
LCB5YLR260W FET3P38993 636 aa3.34□□□□□ -1.88
LCB5YLR260W MSS4P38994 779 aa3.34□□□□□ -1.88
LCB5YLR260W ARG2P40360 574 aa3.34□□□□□ -1.88
LCB5YLR260W YFL064CP43540 174 aa3.34□□□□□ -1.88
LCB5YLR260W FAR3P46671 204 aa3.34□□□□□ -1.88
LCB5YLR260W KTR5P53966 522 aaPredicted RBP3.34□□□□□ -1.88
LCB5YLR260W PLB2Q03674 706 aa3.34□□□□□ -1.88
LCB5YLR260W YDR132CQ03900 495 aa3.34□□□□□ -1.88
LCB5YLR260W YPR114WQ06107 315 aa3.34□□□□□ -1.88
LCB5YLR260W YFT2Q06676 274 aa3.34□□□□□ -1.88
LCB5YLR260W CYK3Q07533 885 aa3.34□□□□□ -1.88
LCB5YLR260W REX4Q08237 289 aa3.34□□□□□ -1.88
LCB5YLR260W MRH1Q12117 320 aaPredicted RBP3.34□□□□□ -1.88
LCB5YLR260W YRA1Q12159 226 aaKnown RBP3.34□□□□□ -1.88
LCB5YLR260W ACF2Q12168 779 aa3.34□□□□□ -1.88
LCB5YLR260W PRP46Q12417 451 aaPredicted RBP3.34□□□□□ -1.88
LCB5YLR260W RMD5Q12508 421 aa3.34□□□□□ -1.88
LCB5YLR260W YBR255C-AQ3E776 120 aa3.34□□□□□ -1.88
LCB5YLR260W UBA3Q99344 299 aa3.34□□□□□ -1.88
LCB5YLR260W AI5_ALPHAQ9ZZX1 630 aa3.34□□□□□ -1.88
LCB5YLR260W STT4P37297 1900 aa3.33□□□□□ -1.88
LCB5YLR260W YLR415CO13578 112 aa3.33□□□□□ -1.88
LCB5YLR260W GPH1P06738 902 aaKnown RBP3.33□□□□□ -1.88
LCB5YLR260W RPL27AP0C2H6 136 aaKnown RBP3.33□□□□□ -1.88
LCB5YLR260W RPL27BP0C2H7 136 aaKnown RBP3.33□□□□□ -1.88
LCB5YLR260W YMR085WP0CF18 432 aa3.33□□□□□ -1.88
LCB5YLR260W SLY1P22213 666 aa3.33□□□□□ -1.88
LCB5YLR260W RHB1P25378 209 aa3.33□□□□□ -1.88
LCB5YLR260W CSM1P25651 190 aa3.33□□□□□ -1.88
LCB5YLR260W SPS19P32573 292 aaKnown RBP3.33□□□□□ -1.88
LCB5YLR260W GCG1P32656 232 aaKnown RBP3.33□□□□□ -1.88
LCB5YLR260W RPC34P32910 317 aa3.33□□□□□ -1.88
LCB5YLR260W VPS51P36116 164 aa3.33□□□□□ -1.88
LCB5YLR260W DIA4P38705 446 aaPredicted RBP3.33□□□□□ -1.88
LCB5YLR260W SAP1P39955 897 aaKnown RBP3.33□□□□□ -1.88
LCB5YLR260W YAT2P40017 923 aa3.33□□□□□ -1.88
LCB5YLR260W YER137CP40083 148 aaKnown RBP3.33□□□□□ -1.88
LCB5YLR260W PIG2P40187 538 aa3.33□□□□□ -1.88
LCB5YLR260W YIL001WP40560 513 aa3.33□□□□□ -1.88
LCB5YLR260W ECL1P48235 211 aa3.33□□□□□ -1.88
LCB5YLR260W SSU72P53538 206 aaPredicted RBP3.33□□□□□ -1.88
LCB5YLR260W YTP1P53584 459 aa3.33□□□□□ -1.88
LCB5YLR260W SWS2P53937 143 aa3.33□□□□□ -1.88
LCB5YLR260W YPL113CQ02961 396 aa3.33□□□□□ -1.88
LCB5YLR260W SEC10Q06245 871 aa3.33□□□□□ -1.88
LCB5YLR260W TPO1Q07824 586 aa3.33□□□□□ -1.88
LCB5YLR260W SDO1Q07953 250 aaKnown RBP3.33□□□□□ -1.88
LCB5YLR260W LSO2Q3E772 92 aaKnown RBP3.33□□□□□ -1.88
LCB5YLR260W GDH1P07262 454 aaKnown RBP3.32□□□□□ -1.88
LCB5YLR260W RPS16AP0CX51 143 aaKnown RBP3.32□□□□□ -1.88
LCB5YLR260W RPS16BP0CX52 143 aaKnown RBP3.32□□□□□ -1.88
LCB5YLR260W YAP1P19880 650 aaKnown RBP3.32□□□□□ -1.88
LCB5YLR260W MRPL9P31334 269 aa3.32□□□□□ -1.88
LCB5YLR260W SKT5P34226 696 aa3.32□□□□□ -1.88
LCB5YLR260W CBT1P36038 271 aaPredicted RBP3.32□□□□□ -1.88
LCB5YLR260W RTC2P38279 296 aa3.32□□□□□ -1.88
LCB5YLR260W YMR262WP38430 313 aa3.32□□□□□ -1.88
LCB5YLR260W MMS21P38632 267 aa3.32□□□□□ -1.88
LCB5YLR260W YHR122WP38829 231 aa3.32□□□□□ -1.88
LCB5YLR260W ELO1P39540 310 aa3.32□□□□□ -1.88
LCB5YLR260W PHB1P40961 287 aa3.32□□□□□ -1.88
LCB5YLR260W SPG5P42933 373 aa3.32□□□□□ -1.88
LCB5YLR260W TMA22P47089 198 aaPredicted RBP3.32□□□□□ -1.88
LCB5YLR260W YGL108CP53139 140 aa3.32□□□□□ -1.88
LCB5YLR260W VPS73P53142 486 aaKnown RBP3.32□□□□□ -1.88
LCB5YLR260W FRE4P53746 719 aa3.32□□□□□ -1.88
LCB5YLR260W NUP116Q02630 1113 aa3.32□□□□□ -1.88
LCB5YLR260W SKI8Q02793 397 aaPredicted RBP3.32□□□□□ -1.88
LCB5YLR260W PRM15Q03262 622 aa3.32□□□□□ -1.88
LCB5YLR260W ROT1Q03691 256 aa3.32□□□□□ -1.88
LCB5YLR260W TRM82Q03774 444 aa3.32□□□□□ -1.88
LCB5YLR260W CDC123Q05791 360 aa3.32□□□□□ -1.88
LCB5YLR260W SYO1Q07395 620 aa3.32□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms