RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC1	YFL008W	YCH1	P42937	148 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	BIO3	P50277	480 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	MEH1	Q02205	184 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	RPL6A	Q02326	176 aa	Known RBP	0.98	□□□□□ -2.25
SMC1	YFL008W	RRN11	Q04712	507 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	GGA1	Q06336	557 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	SWI1	P09547	1314 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	VPS1	P21576	704 aa	Known RBP	0.98	□□□□□ -2.25
SMC1	YFL008W	PRE8	P23639	250 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	MEI5	P32489	222 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	YSC83	P32792	385 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	MDL1	P33310	695 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	PFF1	P38244	976 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	FES1	P38260	290 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	CHL4	P38907	458 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	PHB1	P40961	287 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	YGR111W	P53265	400 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	HST1	P53685	503 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	YIF1	P53845	314 aa	Known RBP	0.98	□□□□□ -2.25
SMC1	YFL008W	ERO1	Q03103	563 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	KRE28	Q04431	385 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	ECM7	Q06200	448 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	YRM1	Q12340	786 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	NOT5	Q12514	560 aa	Predicted RBP	0.98	□□□□□ -2.25
SMC1	YFL008W	LSO2	Q3E772	92 aa	Known RBP	0.98	□□□□□ -2.25
SMC1	YFL008W	IRA1	P18963	3092 aa		0.98	□□□□□ -2.25
SMC1	YFL008W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	0.97	□□□□□ -2.25	not detected
SMC1	YFL008W	RPL6B	P05739	176 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	RNR2	P09938	399 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	SEC14	P24280	304 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	RAD51	P25454	400 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	MNS1	P32906	549 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	MPE1	P35728	441 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	KKQ8	P36004	724 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	QDR3	P38227	689 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	SIP3	P38717	1229 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	YER186C	P40101	306 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	POP1	P41812	875 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	GLG2	P47011	380 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	VMA10	P48836	114 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	ROG1	P53118	685 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	MST27	P53176	234 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	FYV6	P53913	173 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	SKI8	Q02793	397 aa	Predicted RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	SRL4	Q03085	281 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	YMR111C	Q04461	462 aa	Predicted RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	YDL114W	Q07530	308 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	YPL199C	Q08954	240 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	VIK1	Q12045	647 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	IZH2	Q12442	317 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	NAM2	P11325	894 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	DAL5	P15365	543 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	YCL068C	P25593	260 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	YCR016W	P25617	290 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	RPL5	P26321	297 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	PEX5	P35056	612 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	BLI1	P35727	113 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	RRN10	P38204	145 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	OLA1	P38219	394 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	OPY1	P38271	328 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	HSM3	P38348	480 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	SHC1	P39000	512 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	SPO73	P40031	143 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	HYR1	P40581	163 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	MDE1	P47095	244 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	PHB2	P50085	310 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	NUP84	P52891	726 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	RSC1	P53236	928 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	MDG1	P53885	366 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	SUR7	P54003	302 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	CMS1	Q07897	291 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	RRG1	Q12167	365 aa	Predicted RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	BUG1	Q12191	341 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	SNU66	Q12420	587 aa	Predicted RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	REP1	P03871	373 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	CBP6	P07253	162 aa	Predicted RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	HOM3	P10869	527 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	MSI1	P13712	422 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	NMT1	P14743	455 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	SEN2	P16658	377 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	APE2	P32454	952 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	VMA8	P32610	256 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	YEF1	P32622	495 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	UBC6	P33296	250 aa	Predicted RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	ADH5	P38113	351 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	MMS4	P38257	691 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	RCK2	P38623	610 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	YRB1	P41920	201 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	FYV8	P46949	817 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	HMS2	P47175	358 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	CIK1	Q01649	594 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	YML108W	Q03759	105 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	INP2	Q03824	705 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	FUS2	Q05670	677 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	NNT1	Q05874	261 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	RIF2	Q06208	395 aa		0.97	□□□□□ -2.25
SMC1	YFL008W	RPN5	Q12250	445 aa	Known RBP	0.97	□□□□□ -2.25
SMC1	YFL008W	RAD1	P06777	1100 aa		0.96	□□□□□ -2.26
SMC1	YFL008W	RPB4	P20433	221 aa	Predicted RBP	0.96	□□□□□ -2.26
SMC1	YFL008W	RPI1	P23250	407 aa	Known RBP	0.96	□□□□□ -2.26

Retrieved 100 of 5,963 RNA–protein pairs in 33.4 ms