RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C AVT4P50944 713 aa1.34□□□□□ -2.2
VPS54YDR027C YIP5P53108 310 aa1.34□□□□□ -2.2
VPS54YDR027C GPI15P53961 229 aa1.34□□□□□ -2.2
VPS54YDR027C YPR022CQ12139 1133 aa1.34□□□□□ -2.2
VPS54YDR027C ORT1Q12375 292 aa1.34□□□□□ -2.2
VPS54YDR027C ECM29P38737 1868 aa1.34□□□□□ -2.2
VPS54YDR027C HIS4P00815 799 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C ALG1P16661 449 aa1.33□□□□□ -2.2
VPS54YDR027C CPR4P25334 318 aa1.33□□□□□ -2.2
VPS54YDR027C YCR100CP25606 316 aa1.33□□□□□ -2.2
VPS54YDR027C PHO91P27514 894 aa1.33□□□□□ -2.2
VPS54YDR027C ITR1P30605 584 aa1.33□□□□□ -2.2
VPS54YDR027C SMI1P32566 505 aa1.33□□□□□ -2.2
VPS54YDR027C UTH1P36135 365 aa1.33□□□□□ -2.2
VPS54YDR027C WSS1P38838 269 aa1.33□□□□□ -2.2
VPS54YDR027C MNL1P38888 796 aa1.33□□□□□ -2.2
VPS54YDR027C YAL037WP39728 267 aa1.33□□□□□ -2.2
VPS54YDR027C GAT2P40209 560 aa1.33□□□□□ -2.2
VPS54YDR027C RRT5P43607 289 aa1.33□□□□□ -2.2
VPS54YDR027C PIB2P53191 635 aa1.33□□□□□ -2.2
VPS54YDR027C TAF12Q03761 539 aa1.33□□□□□ -2.2
VPS54YDR027C YDR341CQ05506 607 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C DBP9Q06218 594 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C TSR1Q07381 788 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C SSK22P25390 1331 aaPredicted RBP1.33□□□□□ -2.2
VPS54YDR027C CHS1P08004 1131 aa1.33□□□□□ -2.2
VPS54YDR027C NFT1P0CE68 1218 aa1.33□□□□□ -2.2
VPS54YDR027C YAR066WP0CX18 203 aa1.33□□□□□ -2.2
VPS54YDR027C YHR214WP0CX19 203 aa1.33□□□□□ -2.2
VPS54YDR027C SPO12P17123 173 aa1.33□□□□□ -2.2
VPS54YDR027C PHO84P25297 587 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C KRR1P25586 316 aaPredicted RBP1.33□□□□□ -2.2
VPS54YDR027C NRP1P32770 719 aaKnown RBP RIP-Chip data1.33□□□□□ -2.2not detected
VPS54YDR027C YSC83P32792 385 aa1.33□□□□□ -2.2
VPS54YDR027C OLA1P38219 394 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C QDR3P38227 689 aa1.33□□□□□ -2.2
VPS54YDR027C LYS1P38998 373 aaRIP-Chip data1.33□□□□□ -2.2not detected
VPS54YDR027C YPS6P40583 537 aa1.33□□□□□ -2.2
VPS54YDR027C EPL1P43572 832 aa1.33□□□□□ -2.2
VPS54YDR027C MLC1P53141 149 aa1.33□□□□□ -2.2
VPS54YDR027C POP6P53218 158 aa1.33□□□□□ -2.2
VPS54YDR027C HAL1Q01766 294 aa1.33□□□□□ -2.2
VPS54YDR027C PSY3Q12318 242 aa1.33□□□□□ -2.2
VPS54YDR027C RMD5Q12508 421 aa1.33□□□□□ -2.2
VPS54YDR027C SAM1P10659 382 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C SCH9P11792 824 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C PET123P17558 318 aa1.33□□□□□ -2.2
VPS54YDR027C SAM2P19358 384 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C RAD57P25301 460 aa1.33□□□□□ -2.2
VPS54YDR027C NDI1P32340 513 aa1.33□□□□□ -2.2
VPS54YDR027C GLC7P32598 312 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C RSM22P36056 628 aa1.33□□□□□ -2.2
VPS54YDR027C NAT2P37293 288 aa1.33□□□□□ -2.2
VPS54YDR027C INM1P38710 295 aa1.33□□□□□ -2.2
VPS54YDR027C POP2P39008 433 aa1.33□□□□□ -2.2
VPS54YDR027C PCF11P39081 626 aaPredicted RBP1.33□□□□□ -2.2
VPS54YDR027C PTI1P39927 425 aaPredicted RBP1.33□□□□□ -2.2
VPS54YDR027C RTR1P40084 226 aaPredicted RBP1.33□□□□□ -2.2
VPS54YDR027C NAS2P40555 220 aa1.33□□□□□ -2.2
VPS54YDR027C TOS2P50078 622 aa1.33□□□□□ -2.2
VPS54YDR027C PMT5P52867 743 aa1.33□□□□□ -2.2
VPS54YDR027C FRE4P53746 719 aa1.33□□□□□ -2.2
VPS54YDR027C PDR16P53860 351 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C UTP6Q02354 440 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C PNG1Q02890 363 aa1.33□□□□□ -2.2
VPS54YDR027C YDR541CQ03049 344 aa1.33□□□□□ -2.2
VPS54YDR027C RPN9Q04062 393 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C NDL1Q06568 189 aa1.33□□□□□ -2.2
VPS54YDR027C YDR061WQ12298 539 aa1.33□□□□□ -2.2
VPS54YDR027C WTM1Q12363 437 aaKnown RBP1.33□□□□□ -2.2
VPS54YDR027C TFB5Q3E7C1 72 aaPredicted RBP1.33□□□□□ -2.2
VPS54YDR027C OPI3P05375 206 aa1.32□□□□□ -2.2
VPS54YDR027C CDC21P06785 304 aa1.32□□□□□ -2.2
VPS54YDR027C TRX1P22217 103 aaKnown RBP1.32□□□□□ -2.2
VPS54YDR027C PCL1P24867 279 aa1.32□□□□□ -2.2
VPS54YDR027C TIP1P27654 210 aaPredicted RBP1.32□□□□□ -2.2
VPS54YDR027C CYS4P32582 507 aaKnown RBP1.32□□□□□ -2.2
VPS54YDR027C YEL043WP32618 956 aa1.32□□□□□ -2.2
VPS54YDR027C DAD2P36162 133 aa1.32□□□□□ -2.2
VPS54YDR027C SPP381P38282 291 aaPredicted RBP1.32□□□□□ -2.2
VPS54YDR027C YHR177WP38867 453 aa1.32□□□□□ -2.2
VPS54YDR027C PES4P39684 611 aa1.32□□□□□ -2.2
VPS54YDR027C ODC1Q03028 310 aa1.32□□□□□ -2.2
VPS54YDR027C URH1Q04179 340 aa1.32□□□□□ -2.2
VPS54YDR027C YFH1Q07540 174 aa1.32□□□□□ -2.2
VPS54YDR027C REX4Q08237 289 aa1.32□□□□□ -2.2
VPS54YDR027C SRL2Q12020 392 aa1.32□□□□□ -2.2
VPS54YDR027C RNH203Q12338 110 aa1.32□□□□□ -2.2
VPS54YDR027C SFG1Q12507 346 aa1.32□□□□□ -2.2
VPS54YDR027C HFA1P32874 2273 aa1.32□□□□□ -2.2
VPS54YDR027C DST1P07273 309 aa1.32□□□□□ -2.2
VPS54YDR027C MID2P36027 376 aa1.32□□□□□ -2.2
VPS54YDR027C MRP21P38175 177 aa1.32□□□□□ -2.2
VPS54YDR027C YBR137WP38276 179 aa1.32□□□□□ -2.2
VPS54YDR027C CUE3P53137 624 aaKnown RBP1.32□□□□□ -2.2
VPS54YDR027C YNL143CP53908 130 aa1.32□□□□□ -2.2
VPS54YDR027C BET5Q03630 159 aa1.32□□□□□ -2.2
VPS54YDR027C ECM7Q06200 448 aa1.32□□□□□ -2.2
VPS54YDR027C IPK1Q06667 281 aa1.32□□□□□ -2.2
VPS54YDR027C SKI7Q08491 747 aaPredicted RBP1.32□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 29.1 ms