RNA–Protein interactions for RNA: YIL156W

UBP7, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP7, Length 3,216 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP7	YIL156W	MES1	P00958	751 aa	Known RBP	4.71	□□□□□ -1.66
UBP7	YIL156W	NUP1	P20676	1076 aa		4.71	□□□□□ -1.66
UBP7	YIL156W	CSM1	P25651	190 aa		4.71	□□□□□ -1.66
UBP7	YIL156W	FUN19	P28003	413 aa	Predicted RBP	4.71	□□□□□ -1.66
UBP7	YIL156W	UBA4	P38820	440 aa		4.71	□□□□□ -1.66
UBP7	YIL156W	AIM33	Q04516	312 aa		4.71	□□□□□ -1.66
UBP7	YIL156W	YPR022C	Q12139	1133 aa		4.71	□□□□□ -1.66
UBP7	YIL156W	APC2	Q12440	853 aa		4.71	□□□□□ -1.66
UBP7	YIL156W	RPS13	P05756	151 aa	Known RBP	4.71	□□□□□ -1.66
UBP7	YIL156W	SNF3	P10870	884 aa		4.71	□□□□□ -1.66
UBP7	YIL156W	ERG4	P25340	473 aa		4.71	□□□□□ -1.66
UBP7	YIL156W	DST1	P07273	309 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	RAD57	P25301	460 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	UBP8	P50102	471 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	YIF1	P53845	314 aa	Known RBP	4.7	□□□□□ -1.66
UBP7	YIL156W	NSG2	P53898	299 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	SPP2	Q02521	185 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	GIP3	Q03016	1276 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	NUP53	Q03790	475 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	COQ11	Q05892	277 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	PRP46	Q12417	451 aa	Predicted RBP	4.7	□□□□□ -1.66
UBP7	YIL156W	YOS9	Q99220	542 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	RPS16A	P0CX51	143 aa	Known RBP	4.7	□□□□□ -1.66
UBP7	YIL156W	RPS16B	P0CX52	143 aa	Known RBP	4.7	□□□□□ -1.66
UBP7	YIL156W	RPL12A	P0CX53	165 aa	Known RBP	4.7	□□□□□ -1.66
UBP7	YIL156W	RPL12B	P0CX54	165 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	ARG2	P40360	574 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	UTP25	P40498	721 aa	Known RBP	4.7	□□□□□ -1.66
UBP7	YIL156W	SHS1	Q07657	551 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	YPR1	Q12458	312 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	UBA3	Q99344	299 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.7	□□□□□ -1.66	not detected
UBP7	YIL156W	ALG7	P07286	448 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	OSM1	P21375	501 aa	Known RBP	4.7	□□□□□ -1.66
UBP7	YIL156W	SKG6	P32900	734 aa	Predicted RBP	4.7	□□□□□ -1.66
UBP7	YIL156W	ROT2	P38138	954 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	YHR182W	P38870	785 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	PRM9	P39551	298 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	MIT1	P40002	666 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	DSE1	P40077	573 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	TDA10	P42938	290 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	TRS85	P46944	698 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	SMM1	P53720	384 aa	Known RBP	4.7	□□□□□ -1.66
UBP7	YIL156W	SMC5	Q08204	1093 aa		4.7	□□□□□ -1.66
UBP7	YIL156W	IMA3	P0CW40	589 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	IMA4	P0CW41	589 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	RAD24	P32641	659 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	YKR073C	P36153	106 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	PPS1	P38148	807 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	NDC80	P40460	691 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	YDR387C	Q04162	555 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	BUR2	Q05949	395 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	IMA2	Q08295	589 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	SSK22	P25390	1331 aa	Predicted RBP	4.69	□□□□□ -1.66
UBP7	YIL156W	TDH2	P00358	332 aa	Known RBP	4.69	□□□□□ -1.66
UBP7	YIL156W	YCP4	P25349	247 aa	Known RBP	4.69	□□□□□ -1.66
UBP7	YIL156W	YCR006C	P25350	157 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	YAR1	P46683	200 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	YGL117W	P53133	265 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	ENT5	Q03769	411 aa	Known RBP	4.69	□□□□□ -1.66
UBP7	YIL156W	SMP3	Q04174	516 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	MYO5	Q04439	1219 aa	Known RBP	4.69	□□□□□ -1.66
UBP7	YIL156W	YOR029W	Q12243	111 aa		4.69	□□□□□ -1.66
UBP7	YIL156W	COX2	P00410	251 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	RAD3	P06839	778 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	CBP4	P37267	147 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	MAL32	P38158	584 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	YHB1	P39676	399 aa	Known RBP	4.68	□□□□□ -1.66
UBP7	YIL156W	LCP5	P40079	357 aa	Predicted RBP	4.68	□□□□□ -1.66
UBP7	YIL156W	MAL12	P53341	584 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	CPR8	P53728	308 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	ESBP6	P53918	673 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	SLT2	Q00772	484 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	YSP2	Q06681	1438 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	SEC3	P33332	1336 aa	Known RBP	4.68	□□□□□ -1.66
UBP7	YIL156W	MATALPHA1	P0CY06	175 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	HMLALPHA1	P0CY07	175 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	FRS2	P15625	503 aa	Known RBP	4.68	□□□□□ -1.66
UBP7	YIL156W	CKI1	P20485	582 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	SLM5	P25345	492 aa	Known RBP	4.68	□□□□□ -1.66
UBP7	YIL156W	PRR1	P28708	518 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	COS9	P36034	407 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	MMS21	P38632	267 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	HXT9	P40885	567 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	YJR154W	P47181	346 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	MPS1	P54199	764 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	HXT11	P54862	567 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	SMX3	P54999	86 aa	Predicted RBP	4.68	□□□□□ -1.66
UBP7	YIL156W	RNT1	Q02555	471 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	YPL068C	Q02749	293 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	BNA7	Q04066	261 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	RAX1	Q08760	435 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	RGS2	Q99188	309 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	YPK2	P18961	677 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	DSL1	P53847	754 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	YLR283W	Q05867	314 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	GET4	Q12125	312 aa		4.68	□□□□□ -1.66
UBP7	YIL156W	ZIP1	P31111	875 aa		4.67	□□□□□ -1.66
UBP7	YIL156W	OCT1	P35999	772 aa		4.67	□□□□□ -1.66
UBP7	YIL156W	YMC2	P38087	329 aa		4.67	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 25.9 ms