RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 PUS10Q3MIT2 529 aaKnown RBP21.59■■□□□ 1.05
CDX1-202ENST00000616154 PTCRAQ6ISU1 281 aaPredicted RBP21.59■■□□□ 1.05
CDX1-202ENST00000616154 Q6ZUG5 572 aa21.59■■□□□ 1.05
CDX1-202ENST00000616154 FAM178BQ8IXR5 827 aa21.59■■□□□ 1.05
CDX1-202ENST00000616154 LINC01599Q8WXQ3 324 aa21.59■■□□□ 1.05
CDX1-202ENST00000616154 KHSRPQ92945 711 aaKnown RBP eCLIP21.59■■□□□ 1.05
CDX1-202ENST00000616154 CLP1Q92989 425 aaKnown RBP21.59■■□□□ 1.05
CDX1-202ENST00000616154 ZNF689Q96CS4 500 aaPredicted RBP21.59■■□□□ 1.05
CDX1-202ENST00000616154 PABPC5Q96DU9 382 aaKnown RBP21.59■■□□□ 1.05
CDX1-202ENST00000616154 C11orf84Q9BUA3 381 aaPredicted RBP21.59■■□□□ 1.05
CDX1-202ENST00000616154 TM6SF1Q9BZW5 370 aa21.59■■□□□ 1.05
CDX1-202ENST00000616154 LMAN2LQ9H0V9 348 aa21.59■■□□□ 1.05
CDX1-202ENST00000616154 ZSWIM6Q9HCJ5 1215 aa21.59■■□□□ 1.05
CDX1-202ENST00000616154 BARHL2Q9NY43 387 aa21.59■■□□□ 1.05
CDX1-202ENST00000616154 PCDHA2Q9Y5H9 948 aa21.59■■□□□ 1.05
CDX1-202ENST00000616154 TRPV2Q9Y5S1 764 aa21.59■■□□□ 1.05
CDX1-202ENST00000616154 CCDC196A0A1B0GTZ2 297 aa21.58■■□□□ 1.05
CDX1-202ENST00000616154 SMCO2A6NFE2 343 aa21.58■■□□□ 1.05
CDX1-202ENST00000616154 MEIS1O00470 390 aa21.58■■□□□ 1.05
CDX1-202ENST00000616154 ATG7O95352 703 aa21.58■■□□□ 1.05
CDX1-202ENST00000616154 CD52P31358 61 aa21.58■■□□□ 1.05
CDX1-202ENST00000616154 CLK2P49760 499 aaKnown RBP21.58■■□□□ 1.05
CDX1-202ENST00000616154 STAT5BP51692 787 aa21.58■■□□□ 1.05
CDX1-202ENST00000616154 BRF1Q92994 677 aa21.58■■□□□ 1.05
CDX1-202ENST00000616154 LRFN3Q9BTN0 628 aa21.58■■□□□ 1.05
CDX1-202ENST00000616154 FTHL17Q9BXU8 183 aa21.58■■□□□ 1.05
CDX1-202ENST00000616154 GRXCR2A6NFK2 248 aa21.57■■□□□ 1.04
CDX1-202ENST00000616154 DGKIO75912 1065 aa21.57■■□□□ 1.04
CDX1-202ENST00000616154 IL9P15248 144 aa21.57■■□□□ 1.04
CDX1-202ENST00000616154 SLC26A2P50443 739 aa21.57■■□□□ 1.04
CDX1-202ENST00000616154 NIPA1Q7RTP0 329 aa21.57■■□□□ 1.04
CDX1-202ENST00000616154 TRAPPC12Q8WVT3 735 aa21.57■■□□□ 1.04
CDX1-202ENST00000616154 TMEM260Q9NX78 707 aa21.57■■□□□ 1.04
CDX1-202ENST00000616154 MYH9P35579 1960 aaKnown RBP21.57■■□□□ 1.04
CDX1-202ENST00000616154 IGSF9BQ9UPX0 1349 aa21.57■■□□□ 1.04
CDX1-202ENST00000616154 KDM3AQ9Y4C1 1321 aa21.57■■□□□ 1.04
CDX1-202ENST00000616154 IGKV6D-21A0A0A0MT36 114 aa21.56■■□□□ 1.04
CDX1-202ENST00000616154 SMIM35A0A1B0GVV1 85 aa21.56■■□□□ 1.04
CDX1-202ENST00000616154 H3BQ06 376 aaPredicted RBP21.56■■□□□ 1.04
CDX1-202ENST00000616154 M0QZ92 97 aa21.56■■□□□ 1.04
CDX1-202ENST00000616154 METAP2P50579 478 aaKnown RBP eCLIP21.56■■□□□ 1.04
CDX1-202ENST00000616154 FGD1P98174 961 aa21.56■■□□□ 1.04
CDX1-202ENST00000616154 APOBRQ0VD83 1088 aa21.56■■□□□ 1.04
CDX1-202ENST00000616154 BTG3Q14201 252 aaPredicted RBP21.56■■□□□ 1.04
CDX1-202ENST00000616154 C8orf34Q49A92 452 aa21.56■■□□□ 1.04
CDX1-202ENST00000616154 TMEM31Q5JXX7 168 aa21.56■■□□□ 1.04
CDX1-202ENST00000616154 RUFY3Q7L099 469 aa21.56■■□□□ 1.04
CDX1-202ENST00000616154 GJD3Q8N144 294 aa21.56■■□□□ 1.04
CDX1-202ENST00000616154 CRIPAKQ8N1N5 446 aa21.56■■□□□ 1.04
CDX1-202ENST00000616154 EVPLQ92817 2033 aa21.56■■□□□ 1.04
CDX1-202ENST00000616154 POTEB3A0JP26 581 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 PI4K2BG5E9Z4 385 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 GRM6O15303 877 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 NCK2O43639 380 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 GPR37L1O60883 481 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 ADD1P35611 737 aaKnown RBP21.55■■□□□ 1.04
CDX1-202ENST00000616154 TMEM62Q0P6H9 643 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 POTEBQ6S5H4 581 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 RTN4RL1Q86UN2 441 aaPredicted RBP21.55■■□□□ 1.04
CDX1-202ENST00000616154 NME8Q8N427 588 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 PLVAPQ9BX97 442 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 CELF4Q9BZC1 486 aaKnown RBP21.55■■□□□ 1.04
CDX1-202ENST00000616154 C11orf16Q9NQ32 467 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 PADI3Q9ULW8 664 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 CCNE2O96020 404 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 ZNF76P36508 570 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 PLA2G5P39877 138 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 PFKFB3Q16875 520 aaPredicted RBP21.55■■□□□ 1.04
CDX1-202ENST00000616154 MTHFD1LQ6UB35 978 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 ABHD15Q6UXT9 468 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 NPAS4Q8IUM7 802 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 CMTR2Q8IYT2 770 aaKnown RBP21.55■■□□□ 1.04
CDX1-202ENST00000616154 CRYGNQ8WXF5 182 aa21.55■■□□□ 1.04
CDX1-202ENST00000616154 WDR81Q562E7 1941 aa21.54■■□□□ 1.04
CDX1-202ENST00000616154 PAK2Q13177 524 aa21.54■■□□□ 1.04
CDX1-202ENST00000616154 TOB2Q14106 344 aaPredicted RBP21.54■■□□□ 1.04
CDX1-202ENST00000616154 NTRK3Q16288 839 aa21.54■■□□□ 1.04
CDX1-202ENST00000616154 FAM160B1Q5W0V3 765 aa21.54■■□□□ 1.04
CDX1-202ENST00000616154 ATP8B4Q8TF62 1192 aa21.54■■□□□ 1.04
CDX1-202ENST00000616154 CLDND1Q9NY35 253 aa21.54■■□□□ 1.04
CDX1-202ENST00000616154 FAM50BQ9Y247 325 aa21.54■■□□□ 1.04
CDX1-202ENST00000616154 COL1A2P08123 1366 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 IGLV3-22A0A075B6J6 115 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 ESYT2A0FGR8 921 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 FAM86B1E9PN63 330 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 DDX39AO00148 427 aaKnown RBP21.53■■□□□ 1.04
CDX1-202ENST00000616154 BACH1O14867 736 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 HBP1O60381 514 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 MMP1P03956 469 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 CYP3A4P08684 503 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 FAM86B2P0C5J1 330 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 STAG3L1P0CL83 205 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 KRT76Q01546 638 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 CTC1Q2NKJ3 1217 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 JAKMIP3Q5VZ66 844 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 FAM43BQ6ZT52 329 aaPredicted RBP21.53■■□□□ 1.04
CDX1-202ENST00000616154 PLA2G4DQ86XP0 818 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 CCDC60Q8IWA6 550 aaPredicted RBP21.53■■□□□ 1.04
CDX1-202ENST00000616154 P2RX5Q93086 422 aa21.53■■□□□ 1.04
CDX1-202ENST00000616154 MRPL42Q9Y6G3 142 aaKnown RBP21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms