RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PSTPIP2Q9H939 334 aa19.4■□□□□ 0.7
VPS29-204ENST00000548259 TLR9Q9NR96 1032 aa19.4■□□□□ 0.7
VPS29-204ENST00000548259 TELO2Q9Y4R8 837 aa19.4■□□□□ 0.7
VPS29-204ENST00000548259 IGSF9BQ9UPX0 1349 aa19.4■□□□□ 0.7
VPS29-204ENST00000548259 TECTAO75443 2155 aa19.39■□□□□ 0.69
VPS29-204ENST00000548259 GFRA3O60609 400 aa19.39■□□□□ 0.69
VPS29-204ENST00000548259 ATP9AO75110 1047 aa19.39■□□□□ 0.69
VPS29-204ENST00000548259 PPFIA3O75145 1194 aa19.39■□□□□ 0.69
VPS29-204ENST00000548259 NUBP1P53384 320 aa19.39■□□□□ 0.69
VPS29-204ENST00000548259 NUCB1Q02818 461 aa19.39■□□□□ 0.69
VPS29-204ENST00000548259 LINC01599Q8WXQ3 324 aa19.39■□□□□ 0.69
VPS29-204ENST00000548259 CELF4Q9BZC1 486 aaKnown RBP19.39■□□□□ 0.69
VPS29-204ENST00000548259 JPH1Q9HDC5 661 aaPredicted RBP19.39■□□□□ 0.69
VPS29-204ENST00000548259 PCDHA2Q9Y5H9 948 aa19.39■□□□□ 0.69
VPS29-204ENST00000548259 ITGB5P18084 799 aa19.38■□□□□ 0.69
VPS29-204ENST00000548259 SARSP49591 514 aaKnown RBP19.38■□□□□ 0.69
VPS29-204ENST00000548259 TTC3P53804 2025 aa19.38■□□□□ 0.69
VPS29-204ENST00000548259 KRT76Q01546 638 aa19.38■□□□□ 0.69
VPS29-204ENST00000548259 TCF15Q12870 199 aa19.38■□□□□ 0.69
VPS29-204ENST00000548259 RTN4RL1Q86UN2 441 aaPredicted RBP19.38■□□□□ 0.69
VPS29-204ENST00000548259 CRIPAKQ8N1N5 446 aa19.38■□□□□ 0.69
VPS29-204ENST00000548259 ATOH1Q92858 354 aaPredicted RBP19.38■□□□□ 0.69
VPS29-204ENST00000548259 PKD2L1Q9P0L9 805 aa19.38■□□□□ 0.69
VPS29-204ENST00000548259 PUF60Q9UHX1 559 aaKnown RBP19.38■□□□□ 0.69
VPS29-204ENST00000548259 KDM3AQ9Y4C1 1321 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 SMIM35A0A1B0GVV1 85 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 DENND3A2RUS2 1198 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 DDAH1O94760 285 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 GLP2RO95838 553 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 IBSPP21815 317 aaPredicted RBP19.37■□□□□ 0.69
VPS29-204ENST00000548259 FOXK2Q01167 660 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 TMEM62Q0P6H9 643 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 NFX1Q12986 1120 aaKnown RBP19.37■□□□□ 0.69
VPS29-204ENST00000548259 PTPN21Q16825 1174 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 THNSL1Q8IYQ7 743 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 SDF4Q9BRK5 362 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 JADE2Q9NQC1 790 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 C1orf112Q9NSG2 853 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 SLC9A2Q9UBY0 812 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 UBIAD1Q9Y5Z9 338 aa19.37■□□□□ 0.69
VPS29-204ENST00000548259 CYP21A2P08686 494 aa19.36■□□□□ 0.69
VPS29-204ENST00000548259 AVPR2P30518 371 aa19.36■□□□□ 0.69
VPS29-204ENST00000548259 SLC26A2P50443 739 aa19.36■□□□□ 0.69
VPS29-204ENST00000548259 DUSP6Q16828 381 aa19.36■□□□□ 0.69
VPS29-204ENST00000548259 PLPPR4Q7Z2D5 763 aa19.36■□□□□ 0.69
VPS29-204ENST00000548259 ZDBF2Q9HCK1 2354 aa19.36■□□□□ 0.69
VPS29-204ENST00000548259 TBKBP1A7MCY6 615 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 E7EWF7 191 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 PER2O15055 1255 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 FGF18O76093 207 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 STAT5BP51692 787 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 CASC1Q6TDU7 716 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 NFXL1Q6ZNB6 911 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 ZNF654Q8IZM8 581 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 TMTC2Q8N394 836 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 ATP8B4Q8TF62 1192 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 SUSD6Q92537 303 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 SENP2Q9HC62 589 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 TMEM260Q9NX78 707 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 GINS2Q9Y248 185 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 NR2E1Q9Y466 385 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 KAT6AQ92794 2004 aa19.35■□□□□ 0.69
VPS29-204ENST00000548259 GPR182O15218 404 aa19.34■□□□□ 0.69
VPS29-204ENST00000548259 RPS6KA5O75582 802 aa19.34■□□□□ 0.69
VPS29-204ENST00000548259 HOXB8P17481 243 aaPredicted RBP19.34■□□□□ 0.69
VPS29-204ENST00000548259 LAG3P18627 525 aa19.34■□□□□ 0.69
VPS29-204ENST00000548259 SLC24A5Q71RS6 500 aa19.34■□□□□ 0.69
VPS29-204ENST00000548259 ASIC4Q96FT7 647 aa19.34■□□□□ 0.69
VPS29-204ENST00000548259 LZTS1Q9Y250 596 aa19.34■□□□□ 0.69
VPS29-204ENST00000548259 ZFHX2Q9C0A1 2572 aaPredicted RBP19.33■□□□□ 0.69
VPS29-204ENST00000548259 CALM1P0DP23 149 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 CALM2P0DP24 149 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 CALM3P0DP25 149 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 PLCB4Q15147 1175 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 IGDCC4Q8TDY8 1250 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 ADAM2Q99965 735 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 MTA3Q9BTC8 594 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 ATP6V0A4Q9HBG4 840 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 NGRNQ9NPE2 291 aaKnown RBP19.33■□□□□ 0.68
VPS29-204ENST00000548259 RGS18Q9NS28 235 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 FAM86C1Q9NVL1 165 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 PCDHA6Q9UN73 950 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 PCDHGC5Q9Y5F6 944 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 PCDHA8Q9Y5H6 950 aa19.33■□□□□ 0.68
VPS29-204ENST00000548259 CCDC69A6NI79 296 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 HOXA2O43364 376 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 TECP42680 631 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 GATMP50440 423 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 VCPP55072 806 aaKnown RBP19.32■□□□□ 0.68
VPS29-204ENST00000548259 ACTR2P61160 394 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 KRT17Q04695 432 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 TMEM266Q2M3C6 531 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 TPRNQ4KMQ1 711 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 MTHFD1LQ6UB35 978 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 TMEM184AQ6ZMB5 413 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 TEX2Q8IWB9 1127 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 UBALD2Q8IYN6 164 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 COLGALT1Q8NBJ5 622 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 RASGRP4Q8TDF6 673 aa19.32■□□□□ 0.68
VPS29-204ENST00000548259 ZBTB10Q96DT7 871 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms