RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	YJL225C	P40889	1758 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	CBP2	P03874	630 aa	Predicted RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	RPS16A	P0CX51	143 aa	Known RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	RPS16B	P0CX52	143 aa	Known RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	PEP5	P12868	1029 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	VPS3	P23643	1011 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	PSO2	P30620	661 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	SSE1	P32589	693 aa	Known RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	PHO90	P39535	881 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	YER130C	P39959	443 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	AIM10	P39965	576 aa	Known RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	RMD9	P53140	646 aa	Known RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	KTR6	P54070	446 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	IPK1	Q06667	281 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	TY3A-G	Q12173	290 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	TY3A-I	Q99219	290 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	CHS1	P08004	1131 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	YAP1	P19880	650 aa	Known RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	FUN19	P28003	413 aa	Predicted RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	MRP4	P32902	394 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	MNL1	P38888	796 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	MNN9	P39107	395 aa	Known RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	SSO2	P39926	295 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	YIL024C	P40543	189 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	PNC1	P53184	216 aa	Known RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	PIB2	P53191	635 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	CAC2	Q04199	468 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	HSP31	Q04432	237 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	YLR049C	Q12110	428 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	NBL1	Q3E7Y6	73 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	IMA3	P0CW40	589 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	IMA4	P0CW41	589 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	CTR86	P25355	563 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	ITR1	P30605	584 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	UTR4	P32626	227 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	RAD24	P32641	659 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	MGM101	P32787	269 aa	Known RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	YUH1	P35127	236 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	TRS85	P46944	698 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	RPA34	P47006	233 aa	Predicted RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	RIB4	P50861	169 aa	Predicted RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	ORC5	P50874	479 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	YGL185C	P53100	379 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	SMM1	P53720	384 aa	Known RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	ERG13	P54839	491 aa	Known RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	SMA1	Q02651	245 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	YMR087W	Q04299	284 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	DIC1	Q06143	298 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	PDR8	Q06149	701 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	BOP2	Q06150	570 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	ARR1	Q06596	294 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	LOT6	Q07923	191 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	IMA2	Q08295	589 aa		2.23	□□□□□ -2.05
SNU114	YKL173W	MRPL23	Q12487	163 aa	Predicted RBP	2.23	□□□□□ -2.05
SNU114	YKL173W	PUT4	P15380	627 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	URE2	P23202	354 aa	Known RBP	2.22	□□□□□ -2.05
SNU114	YKL173W	COQ3	P27680	312 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	MAK5	P38112	773 aa	Predicted RBP	2.22	□□□□□ -2.05
SNU114	YKL173W	RRN10	P38204	145 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	FAU1	P40099	211 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	PCI8	P40512	444 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	BIO3	P50277	480 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	SHR3	Q02774	210 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	YDR541C	Q03049	344 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	MRPS17	Q03246	237 aa	Predicted RBP	2.22	□□□□□ -2.05
SNU114	YKL173W	BNA5	Q05979	453 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	ECM7	Q06200	448 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	ARR2	Q06597	130 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	YPR022C	Q12139	1133 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	SRN2	Q99176	213 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	TOM1	Q03280	3268 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	ARG80	P07249	177 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	CAR2	P07991	424 aa	Known RBP	2.22	□□□□□ -2.05
SNU114	YKL173W	RPL12A	P0CX53	165 aa	Known RBP	2.22	□□□□□ -2.05
SNU114	YKL173W	RPL12B	P0CX54	165 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	YFL068W	P0CX99	160 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	YLL066W-A	P0CY00	160 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	YLL067W-A	P0CY01	160 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	GAL3	P13045	520 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	MGR1	P25573	417 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	RGT1	P32862	1170 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	TOM71	P38825	639 aa	Known RBP	2.22	□□□□□ -2.05
SNU114	YKL173W	YHR122W	P38829	231 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	SCC4	P40090	624 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	SOL4	P53315	255 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	MRPL1	Q04599	285 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	ORM2	Q06144	216 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	YRM1	Q12340	786 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	RMD5	Q12508	421 aa		2.22	□□□□□ -2.05
SNU114	YKL173W	AMD1	P15274	810 aa	Known RBP	2.21	□□□□□ -2.06
SNU114	YKL173W	TOA2	P32774	122 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	ROT2	P38138	954 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	TIF5	P38431	405 aa	Known RBP	2.21	□□□□□ -2.06
SNU114	YKL173W	SPC97	P38863	823 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	YIL152W	P40455	235 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	ASN2	P49090	572 aa	Known RBP	2.21	□□□□□ -2.06
SNU114	YKL173W	LSC1	P53598	329 aa	Known RBP	2.21	□□□□□ -2.06
SNU114	YKL173W	DBP6	P53734	629 aa	Known RBP	2.21	□□□□□ -2.06
SNU114	YKL173W	AAT1	Q01802	451 aa		2.21	□□□□□ -2.06
SNU114	YKL173W	INP2	Q03824	705 aa		2.21	□□□□□ -2.06

Retrieved 100 of 5,963 RNA–protein pairs in 67.1 ms