RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 PCGF6Q9BYE7 350 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 SMOC1Q9H4F8 434 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 GOLGA6AQ9NYA3 693 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 MYOTQ9UBF9 498 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 PNMA8BQ9ULN7 279 aaPredicted RBP9.66□□□□□ -0.86
NUP54-215ENST00000514313 ANKRD6Q9Y2G4 727 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 HGSO14964 777 aaPredicted RBP9.65□□□□□ -0.86
NUP54-215ENST00000514313 BUB1BO60566 1050 aaPredicted RBP9.65□□□□□ -0.86
NUP54-215ENST00000514313 KRT18P05783 430 aaKnown RBP9.65□□□□□ -0.86
NUP54-215ENST00000514313 GLI4P10075 376 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 PTPN1P18031 435 aaKnown RBP9.65□□□□□ -0.86
NUP54-215ENST00000514313 GJA4P35212 333 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 RHBDL3P58872 404 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 TUSC3Q13454 348 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 CATSPEREQ5SY80 951 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.65□□□□□ -0.86
NUP54-215ENST00000514313 AMOTL1Q8IY63 956 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 ZZZ3Q8IYH5 903 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 TMEM151AQ8N4L1 468 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 TGFBRAP1Q8WUH2 860 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 C16orf92Q96LL3 132 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 RIC8BQ9NVN3 520 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 ASH2LQ9UBL3 628 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 ZBTB21Q9ULJ3 1066 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 SIT1Q9Y3P8 196 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 NUB1Q9Y5A7 615 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 PCDHB4Q9Y5E5 795 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 MRFAP1Q9Y605 127 aa9.65□□□□□ -0.86
NUP54-215ENST00000514313 RASSF10A6NK89 507 aa9.64□□□□□ -0.87
NUP54-215ENST00000514313 TPD52L2O43399 206 aaKnown RBP9.64□□□□□ -0.87
NUP54-215ENST00000514313 C4BPAP04003 597 aaKnown RBP9.64□□□□□ -0.87
NUP54-215ENST00000514313 SDHAP31040 664 aa9.64□□□□□ -0.87
NUP54-215ENST00000514313 FNTBP49356 437 aa9.64□□□□□ -0.87
NUP54-215ENST00000514313 BTBD8Q5XKL5 378 aa9.64□□□□□ -0.87
NUP54-215ENST00000514313 BICRALQ6AI39 1079 aa9.64□□□□□ -0.87
NUP54-215ENST00000514313 CABP7Q86V35 215 aa9.64□□□□□ -0.87
NUP54-215ENST00000514313 DCP2Q8IU60 420 aaKnown RBP9.64□□□□□ -0.87
NUP54-215ENST00000514313 PMM1Q92871 262 aa9.64□□□□□ -0.87
NUP54-215ENST00000514313 SPOCK3Q9BQ16 436 aa9.64□□□□□ -0.87
NUP54-215ENST00000514313 ARNT2Q9HBZ2 717 aa9.64□□□□□ -0.87
NUP54-215ENST00000514313 MSRAQ9UJ68 235 aa9.64□□□□□ -0.87
NUP54-215ENST00000514313 A0A1W2PQJ5 194 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 FITM1A5D6W6 292 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 PRAMEF25A6NGN4 478 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 VSTM5A8MXK1 200 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 HTRA3P83110 453 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 EPHA7Q15375 998 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 CLUL1Q15846 466 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 SPPL2CQ8IUH8 684 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 OXR1Q8N573 874 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 NETO2Q8NC67 525 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 PHOSPHO1Q8TCT1 267 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 SEC14L1Q92503 715 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 HSPBAP1Q96EW2 488 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 ZNF496Q96IT1 587 aaPredicted RBP9.63□□□□□ -0.87
NUP54-215ENST00000514313 TEKT5Q96M29 485 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 ORAI2Q96SN7 254 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 RXFP1Q9HBX9 757 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 INVSQ9Y283 1065 aa9.63□□□□□ -0.87
NUP54-215ENST00000514313 FOXP2O15409 715 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 SGSM2O43147 1006 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 PSPNO60542 156 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 ZRANB2O95218 330 aaKnown RBP eCLIP9.62□□□□□ -0.87
NUP54-215ENST00000514313 PRNPP04156 253 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 MYL1P05976 194 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 ERVFC1P60507 584 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 CYP4F8P98187 520 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 HLTFQ14527 1009 aaKnown RBP eCLIP9.62□□□□□ -0.87
NUP54-215ENST00000514313 ACAP2Q15057 778 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 TIGD5Q53EQ6 642 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 SLC4A10Q6U841 1118 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 DGKHQ86XP1 1220 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 CLEC4DQ8WXI8 215 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 ACAP3Q96P50 834 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 PSMD1Q99460 953 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 SEMA4AQ9H3S1 761 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 OBP2AQ9NY56 170 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 RIPOR2Q9Y4F9 1068 aa9.62□□□□□ -0.87
NUP54-215ENST00000514313 KLHL33A6NCF5 533 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 PLIN1O60240 522 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 IL33O95760 270 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 U2AF1L5P0DN76 240 aaPredicted RBP9.61□□□□□ -0.87
NUP54-215ENST00000514313 U2AF1Q01081 240 aaKnown RBP eCLIP9.61□□□□□ -0.87
NUP54-215ENST00000514313 UBE4AQ14139 1066 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 PRSS36Q5K4E3 855 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 EFCAB2Q5VUJ9 269 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 EPM2AIP1Q7L775 607 aaPredicted RBP9.61□□□□□ -0.87
NUP54-215ENST00000514313 VSIG10LQ86VR7 867 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 CXorf67Q86X51 503 aaPredicted RBP9.61□□□□□ -0.87
NUP54-215ENST00000514313 CLIP3Q96DZ5 547 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 AP5M1Q9H0R1 490 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 ANLNQ9NQW6 1124 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 C19orf73Q9NVV2 129 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 USP36Q9P275 1121 aaKnown RBP9.61□□□□□ -0.87
NUP54-215ENST00000514313 PALD1Q9ULE6 856 aa9.61□□□□□ -0.87
NUP54-215ENST00000514313 TCRBV5S2A0A599 114 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 ACOT7O00154 380 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 MMEP08473 750 aa9.6□□□□□ -0.87
NUP54-215ENST00000514313 LPOP22079 712 aaPredicted RBP9.6□□□□□ -0.87
NUP54-215ENST00000514313 CYP2C19P33261 490 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms