RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	DLD2	P46681	530 aa	Known RBP	2.25	□□□□□ -2.05
VAR1	Q0140	BIR1	P47134	954 aa		2.25	□□□□□ -2.05
VAR1	Q0140	YPS5	P53057	165 aa		2.25	□□□□□ -2.05
VAR1	Q0140	YIF1	P53845	314 aa	Known RBP	2.25	□□□□□ -2.05
VAR1	Q0140	DIA1	P54005	336 aa		2.25	□□□□□ -2.05
VAR1	Q0140	YMR018W	Q04364	514 aa		2.25	□□□□□ -2.05
VAR1	Q0140	RAX2	Q12465	1220 aa		2.25	□□□□□ -2.05
VAR1	Q0140	YLR278C	Q05854	1341 aa		2.24	□□□□□ -2.05
VAR1	Q0140	CBS1	P14066	229 aa		2.24	□□□□□ -2.05
VAR1	Q0140	SPB1	P25582	841 aa	Predicted RBP	2.24	□□□□□ -2.05
VAR1	Q0140	NIP100	P33420	868 aa		2.24	□□□□□ -2.05
VAR1	Q0140	YFR057W	P43625	151 aa		2.24	□□□□□ -2.05
VAR1	Q0140	PGU1	P47180	361 aa		2.24	□□□□□ -2.05
VAR1	Q0140	YGR149W	P48236	432 aa		2.24	□□□□□ -2.05
VAR1	Q0140	MEP3	P53390	489 aa		2.24	□□□□□ -2.05
VAR1	Q0140	BET5	Q03630	159 aa		2.24	□□□□□ -2.05
VAR1	Q0140	VMS1	Q04311	632 aa	Known RBP	2.24	□□□□□ -2.05
VAR1	Q0140	OPY2	Q06810	360 aa		2.24	□□□□□ -2.05
VAR1	Q0140	SMF3	Q12078	473 aa	Predicted RBP	2.24	□□□□□ -2.05
VAR1	Q0140	MSI1	P13712	422 aa		2.23	□□□□□ -2.05
VAR1	Q0140	RPB5	P20434	215 aa		2.23	□□□□□ -2.05
VAR1	Q0140	IDH2	P28241	369 aa	Known RBP	2.23	□□□□□ -2.05
VAR1	Q0140	OM14	P38325	134 aa		2.23	□□□□□ -2.05
VAR1	Q0140	MRX6	P48564	524 aa		2.23	□□□□□ -2.05
VAR1	Q0140	TPS1	Q00764	495 aa	Known RBP	2.23	□□□□□ -2.05
VAR1	Q0140	YET2	Q04210	160 aa		2.23	□□□□□ -2.05
VAR1	Q0140	RIF2	Q06208	395 aa		2.23	□□□□□ -2.05
VAR1	Q0140	RMD5	Q12508	421 aa		2.23	□□□□□ -2.05
VAR1	Q0140	FOB1	O13329	566 aa		2.22	□□□□□ -2.05
VAR1	Q0140	MAS2	P11914	482 aa		2.22	□□□□□ -2.05
VAR1	Q0140	RAD57	P25301	460 aa		2.22	□□□□□ -2.05
VAR1	Q0140	MUD2	P36084	527 aa	Known RBP	2.22	□□□□□ -2.05
VAR1	Q0140	GPI18	P38211	433 aa		2.22	□□□□□ -2.05
VAR1	Q0140	ALD5	P40047	520 aa	Known RBP	2.22	□□□□□ -2.05
VAR1	Q0140	SEC9	P40357	651 aa		2.22	□□□□□ -2.05
VAR1	Q0140	UPF3	P48412	387 aa	Known RBP	2.22	□□□□□ -2.05
VAR1	Q0140	SYF1	Q04048	859 aa	Predicted RBP	2.22	□□□□□ -2.05
VAR1	Q0140	BCH1	Q05029	724 aa		2.22	□□□□□ -2.05
VAR1	Q0140	CST26	P38226	397 aa		2.21	□□□□□ -2.06
VAR1	Q0140	YIL029C	P40538	142 aa		2.21	□□□□□ -2.06
VAR1	Q0140	DOT5	P40553	215 aa		2.21	□□□□□ -2.06
VAR1	Q0140	HMS2	P47175	358 aa		2.21	□□□□□ -2.06
VAR1	Q0140	YPL107W	Q02873	248 aa		2.21	□□□□□ -2.06
VAR1	Q0140	CMS1	Q07897	291 aa	Known RBP	2.21	□□□□□ -2.06
VAR1	Q0140	CDC50	P25656	391 aa		2.2	□□□□□ -2.06
VAR1	Q0140	NOP4	P37838	685 aa	Known RBP	2.2	□□□□□ -2.06
VAR1	Q0140	YHR054C	P38780	354 aa		2.2	□□□□□ -2.06
VAR1	Q0140	TPM2	P40414	161 aa		2.2	□□□□□ -2.06
VAR1	Q0140	YFL012W	P43580	148 aa		2.2	□□□□□ -2.06
VAR1	Q0140	YGL262W	P53054	175 aa		2.2	□□□□□ -2.06
VAR1	Q0140	YIP5	P53108	310 aa		2.2	□□□□□ -2.06
VAR1	Q0140	TWF1	P53250	332 aa		2.2	□□□□□ -2.06
VAR1	Q0140	PIN3	Q06449	215 aa		2.2	□□□□□ -2.06
VAR1	Q0140	PCF11	P39081	626 aa	Predicted RBP	2.19	□□□□□ -2.06
VAR1	Q0140	ESL1	P40456	1118 aa		2.19	□□□□□ -2.06
VAR1	Q0140	SAS2	P40963	338 aa		2.19	□□□□□ -2.06
VAR1	Q0140	BNS1	P50084	137 aa		2.19	□□□□□ -2.06
VAR1	Q0140	KTR6	P54070	446 aa		2.19	□□□□□ -2.06
VAR1	Q0140	MCH1	Q07376	486 aa		2.19	□□□□□ -2.06
VAR1	Q0140	REX4	Q08237	289 aa		2.19	□□□□□ -2.06
VAR1	Q0140	SKI7	Q08491	747 aa	Predicted RBP	2.19	□□□□□ -2.06
VAR1	Q0140	SNU66	Q12420	587 aa	Predicted RBP	2.19	□□□□□ -2.06
VAR1	Q0140	VPS24	P36095	224 aa	Known RBP	2.18	□□□□□ -2.06
VAR1	Q0140	SBE22	P38814	852 aa		2.18	□□□□□ -2.06
VAR1	Q0140	MET28	P40573	187 aa		2.18	□□□□□ -2.06
VAR1	Q0140	VMA13	P41807	478 aa	Known RBP	2.18	□□□□□ -2.06
VAR1	Q0140	SFH5	P47008	294 aa		2.18	□□□□□ -2.06
VAR1	Q0140	YGK3	Q12222	375 aa	Predicted RBP	2.18	□□□□□ -2.06
VAR1	Q0140	SEM1	O94742	89 aa		2.17	□□□□□ -2.06
VAR1	Q0140	ILV5	P06168	395 aa	Known RBP	2.17	□□□□□ -2.06
VAR1	Q0140	SPO7	P18410	259 aa		2.17	□□□□□ -2.06
VAR1	Q0140	SEC66	P33754	206 aa		2.17	□□□□□ -2.06
VAR1	Q0140	ATG18	P43601	500 aa		2.17	□□□□□ -2.06
VAR1	Q0140	FOL3	Q12676	427 aa	Predicted RBP	2.17	□□□□□ -2.06
VAR1	Q0140	SPS4	P09937	338 aa		2.16	□□□□□ -2.06
VAR1	Q0140	PWP2	P25635	923 aa	Known RBP	2.16	□□□□□ -2.06
VAR1	Q0140	TPS2	P31688	896 aa	Known RBP	2.16	□□□□□ -2.06
VAR1	Q0140	ZUO1	P32527	433 aa	Known RBP	2.16	□□□□□ -2.06
VAR1	Q0140	MST27	P53176	234 aa		2.16	□□□□□ -2.06
VAR1	Q0140	GIR2	Q03768	265 aa	Predicted RBP	2.16	□□□□□ -2.06
VAR1	Q0140	RTN1	Q04947	295 aa	Known RBP	2.16	□□□□□ -2.06
VAR1	Q0140	YML133C	Q03099	1374 aa		2.15	□□□□□ -2.07
VAR1	Q0140	YLL067C	Q07888	1374 aa		2.15	□□□□□ -2.07
VAR1	Q0140	YLL066C	Q99208	1374 aa		2.15	□□□□□ -2.07
VAR1	Q0140	SEC63	P14906	663 aa		2.15	□□□□□ -2.07
VAR1	Q0140	CTR86	P25355	563 aa		2.15	□□□□□ -2.07
VAR1	Q0140	MRPL27	P36526	146 aa	Predicted RBP	2.15	□□□□□ -2.07
VAR1	Q0140	YER184C	P39961	794 aa		2.15	□□□□□ -2.07
VAR1	Q0140	EGT2	P42835	1041 aa		2.15	□□□□□ -2.07
VAR1	Q0140	VTC2	P43585	828 aa		2.15	□□□□□ -2.07
VAR1	Q0140	GPH1	P06738	902 aa	Known RBP	2.14	□□□□□ -2.07
VAR1	Q0140	RIP1	P08067	215 aa		2.14	□□□□□ -2.07
VAR1	Q0140	SPO12	P17123	173 aa		2.14	□□□□□ -2.07
VAR1	Q0140	CMC1	P36064	111 aa		2.14	□□□□□ -2.07
VAR1	Q0140	PFF1	P38244	976 aa		2.14	□□□□□ -2.07
VAR1	Q0140	COX14	P39103	70 aa		2.14	□□□□□ -2.07
VAR1	Q0140	YJR011C	P47086	261 aa	Predicted RBP	2.14	□□□□□ -2.07
VAR1	Q0140	MRM2	P53123	320 aa		2.14	□□□□□ -2.07
VAR1	Q0140	YPR195C	Q06594	109 aa		2.14	□□□□□ -2.07
VAR1	Q0140	SLF1	Q12034	447 aa	Known RBP	2.14	□□□□□ -2.07

Retrieved 100 of 5,963 RNA–protein pairs in 31.3 ms