RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE9	YDR393W	UBP11	P36026	717 aa		2.81	□□□□□ -1.96
SHE9	YDR393W	COQ9	Q05779	260 aa		2.81	□□□□□ -1.96
SHE9	YDR393W	SSM4	P40318	1319 aa		2.8	□□□□□ -1.96
SHE9	YDR393W	MON2	P48563	1636 aa	Predicted RBP	2.8	□□□□□ -1.96
SHE9	YDR393W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	2.8	□□□□□ -1.96	not detected
SHE9	YDR393W	BUB3	P26449	341 aa		2.8	□□□□□ -1.96
SHE9	YDR393W	MIX23	P38162	196 aa		2.8	□□□□□ -1.96
SHE9	YDR393W	PRM5	P40476	318 aa		2.8	□□□□□ -1.96
SHE9	YDR393W	ALK1	P43633	760 aa	Known RBP	2.8	□□□□□ -1.96
SHE9	YDR393W	POP6	P53218	158 aa		2.8	□□□□□ -1.96
SHE9	YDR393W	BSC5	P53755	489 aa		2.8	□□□□□ -1.96
SHE9	YDR393W	RAD30	Q04049	632 aa		2.8	□□□□□ -1.96
SHE9	YDR393W	CRM1	P30822	1084 aa	Known RBP	2.79	□□□□□ -1.96
SHE9	YDR393W	MFT1	P33441	392 aa	Known RBP	2.79	□□□□□ -1.96
SHE9	YDR393W	AUR1	P36107	401 aa	Predicted RBP	2.79	□□□□□ -1.96
SHE9	YDR393W	MSG5	P38590	489 aa		2.79	□□□□□ -1.96
SHE9	YDR393W	GTR1	Q00582	310 aa		2.79	□□□□□ -1.96
SHE9	YDR393W	MES1	P00958	751 aa	Known RBP	2.78	□□□□□ -1.96
SHE9	YDR393W	MRP13	P12686	339 aa		2.78	□□□□□ -1.96
SHE9	YDR393W	YIH1	P25637	258 aa		2.78	□□□□□ -1.96
SHE9	YDR393W	SLC1	P33333	303 aa		2.78	□□□□□ -1.96
SHE9	YDR393W	RSM22	P36056	628 aa		2.78	□□□□□ -1.96
SHE9	YDR393W	SAP185	P40856	1058 aa		2.78	□□□□□ -1.96
SHE9	YDR393W	ARC1	P46672	376 aa	Known RBP	2.78	□□□□□ -1.96
SHE9	YDR393W	BUD22	Q04347	519 aa	Known RBP	2.78	□□□□□ -1.96
SHE9	YDR393W	VIP1	Q06685	1146 aa	Known RBP	2.78	□□□□□ -1.96
SHE9	YDR393W	FDH1	Q08911	376 aa		2.78	□□□□□ -1.96
SHE9	YDR393W	ART10	P18634	518 aa	Known RBP	2.77	□□□□□ -1.97
SHE9	YDR393W	STB6	P36085	766 aa		2.77	□□□□□ -1.97
SHE9	YDR393W	OST1	P41543	476 aa	Known RBP	2.77	□□□□□ -1.97
SHE9	YDR393W	AIM22	P47051	409 aa		2.77	□□□□□ -1.97
SHE9	YDR393W	IGO1	P53897	168 aa		2.77	□□□□□ -1.97
SHE9	YDR393W	TOF2	Q02208	771 aa		2.77	□□□□□ -1.97
SHE9	YDR393W	PEX25	Q02969	394 aa		2.77	□□□□□ -1.97
SHE9	YDR393W	SPE4	Q12455	300 aa		2.77	□□□□□ -1.97
SHE9	YDR393W	SGS1	P35187	1447 aa		2.77	□□□□□ -1.97
SHE9	YDR393W	RPS8A	P0CX39	200 aa	Known RBP	2.76	□□□□□ -1.97
SHE9	YDR393W	RPS8B	P0CX40	200 aa	Known RBP	2.76	□□□□□ -1.97
SHE9	YDR393W	KAR3	P17119	729 aa		2.76	□□□□□ -1.97
SHE9	YDR393W	ELO2	P25358	347 aa		2.76	□□□□□ -1.97
SHE9	YDR393W	ZPR1	P53303	486 aa	Known RBP	2.76	□□□□□ -1.97
SHE9	YDR393W	OGG1	P53397	376 aa	Predicted RBP	2.76	□□□□□ -1.97
SHE9	YDR393W	HEF3	P53978	1044 aa	Known RBP	2.76	□□□□□ -1.97
SHE9	YDR393W	YML037C	Q03703	340 aa		2.76	□□□□□ -1.97
SHE9	YDR393W	FMP40	Q08968	688 aa	Predicted RBP	2.76	□□□□□ -1.97
SHE9	YDR393W	DNA2	P38859	1522 aa		2.76	□□□□□ -1.97
SHE9	YDR393W	NCA3	P46955	337 aa		2.75	□□□□□ -1.97
SHE9	YDR393W	HER2	Q03557	464 aa		2.75	□□□□□ -1.97
SHE9	YDR393W	YPL199C	Q08954	240 aa		2.75	□□□□□ -1.97
SHE9	YDR393W	YBL111C	Q3E7Y5	667 aa		2.75	□□□□□ -1.97
SHE9	YDR393W	CDC24	P11433	854 aa	Predicted RBP	2.74	□□□□□ -1.97
SHE9	YDR393W	YSA1	Q01976	231 aa		2.74	□□□□□ -1.97
SHE9	YDR393W	ODC1	Q03028	310 aa		2.74	□□□□□ -1.97
SHE9	YDR393W	SAM1	P10659	382 aa	Known RBP	2.73	□□□□□ -1.97
SHE9	YDR393W	SAM2	P19358	384 aa	Known RBP	2.73	□□□□□ -1.97
SHE9	YDR393W	PRE8	P23639	250 aa		2.73	□□□□□ -1.97
SHE9	YDR393W	YCR100C	P25606	316 aa		2.73	□□□□□ -1.97
SHE9	YDR393W	ATP11	P32453	318 aa		2.73	□□□□□ -1.97
SHE9	YDR393W	AFG3	P39925	761 aa		2.73	□□□□□ -1.97
SHE9	YDR393W	KAP123	P40069	1113 aa	Known RBP	2.73	□□□□□ -1.97
SHE9	YDR393W	YGR021W	P53212	290 aa		2.73	□□□□□ -1.97
SHE9	YDR393W	SPS22	P25380	463 aa		2.72	□□□□□ -1.97
SHE9	YDR393W	BRO1	P48582	844 aa		2.72	□□□□□ -1.97
SHE9	YDR393W	LCL3	P53153	274 aa		2.72	□□□□□ -1.97
SHE9	YDR393W	POL4	P25615	582 aa		2.71	□□□□□ -1.98
SHE9	YDR393W	MNS1	P32906	549 aa		2.71	□□□□□ -1.98
SHE9	YDR393W	KKQ8	P36004	724 aa		2.71	□□□□□ -1.98
SHE9	YDR393W	YBR225W	P38321	900 aa		2.71	□□□□□ -1.98
SHE9	YDR393W	CCT6	P39079	546 aa		2.71	□□□□□ -1.98
SHE9	YDR393W	ISC1	P40015	477 aa	Known RBP	2.71	□□□□□ -1.98
SHE9	YDR393W	IPI3	P53877	555 aa		2.71	□□□□□ -1.98
SHE9	YDR393W	PRP2	P20095	876 aa	Predicted RBP	2.7	□□□□□ -1.98
SHE9	YDR393W	PTH2	P34222	208 aa		2.7	□□□□□ -1.98
SHE9	YDR393W	TRS85	P46944	698 aa		2.7	□□□□□ -1.98
SHE9	YDR393W	CBK1	P53894	756 aa		2.7	□□□□□ -1.98
SHE9	YDR393W	MRP51	Q02950	344 aa		2.7	□□□□□ -1.98
SHE9	YDR393W	BI3	Q9ZZW7	517 aa		2.7	□□□□□ -1.98
SHE9	YDR393W	COR1	P07256	457 aa		2.69	□□□□□ -1.98
SHE9	YDR393W	MRPL10	P36520	322 aa		2.69	□□□□□ -1.98
SHE9	YDR393W	SYG1	P40528	902 aa		2.69	□□□□□ -1.98
SHE9	YDR393W	RPC11	Q04307	110 aa	Predicted RBP	2.69	□□□□□ -1.98
SHE9	YDR393W	SKM1	Q12469	655 aa		2.69	□□□□□ -1.98
SHE9	YDR393W	FUM1	P08417	488 aa	Known RBP	2.68	□□□□□ -1.98
SHE9	YDR393W	NFT1	P0CE68	1218 aa		2.68	□□□□□ -1.98
SHE9	YDR393W	RPL19A	P0CX82	189 aa	Known RBP	2.68	□□□□□ -1.98
SHE9	YDR393W	RPL19B	P0CX83	189 aa	Predicted RBP	2.68	□□□□□ -1.98
SHE9	YDR393W	HSC82	P15108	705 aa	Known RBP	2.68	□□□□□ -1.98
SHE9	YDR393W	PAP1	P29468	568 aa	Known RBP	2.68	□□□□□ -1.98
SHE9	YDR393W	NUP2	P32499	720 aa		2.68	□□□□□ -1.98
SHE9	YDR393W	YKL097C	P34245	136 aa		2.68	□□□□□ -1.98
SHE9	YDR393W	VID24	P38263	362 aa		2.68	□□□□□ -1.98
SHE9	YDR393W	MSR1	P38714	643 aa		2.68	□□□□□ -1.98
SHE9	YDR393W	MTM1	P53320	366 aa		2.68	□□□□□ -1.98
SHE9	YDR393W	CWC25	P53854	179 aa	Known RBP	2.68	□□□□□ -1.98
SHE9	YDR393W	HXT11	P54862	567 aa		2.68	□□□□□ -1.98
SHE9	YDR393W	RAD61	Q99359	647 aa		2.68	□□□□□ -1.98
SHE9	YDR393W	YAR066W	P0CX18	203 aa		2.67	□□□□□ -1.98
SHE9	YDR393W	YHR214W	P0CX19	203 aa		2.67	□□□□□ -1.98
SHE9	YDR393W	EST1	P17214	699 aa	Predicted RBP	2.67	□□□□□ -1.98
SHE9	YDR393W	RIB5	P38145	238 aa		2.67	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 98.8 ms