RNA–Protein interactions for RNA: YBL103C

RTG3, Transcript of bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways, yeast

Gene RTG3, Length 1,461 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTG3	YBL103C	DPB3	P27344	201 aa		3.92	□□□□□ -1.78
RTG3	YBL103C	FRE2	P36033	711 aa		3.92	□□□□□ -1.78
RTG3	YBL103C	NDT80	P38830	627 aa		3.92	□□□□□ -1.78
RTG3	YBL103C	HIP1	P06775	603 aa		3.92	□□□□□ -1.78
RTG3	YBL103C	PAH1	P32567	862 aa		3.92	□□□□□ -1.78
RTG3	YBL103C	MBB1	P39534	108 aa		3.92	□□□□□ -1.78
RTG3	YBL103C	GCD10	P41814	478 aa		3.92	□□□□□ -1.78
RTG3	YBL103C	AVT4	P50944	713 aa		3.92	□□□□□ -1.78
RTG3	YBL103C	ARK1	P53974	638 aa		3.92	□□□□□ -1.78
RTG3	YBL103C	HEL2	Q05580	639 aa	Known RBP	3.92	□□□□□ -1.78
RTG3	YBL103C	RRP12	Q12754	1228 aa	Known RBP	3.92	□□□□□ -1.78
RTG3	YBL103C	BUB3	P26449	341 aa		3.91	□□□□□ -1.78
RTG3	YBL103C	YME1	P32795	747 aa		3.91	□□□□□ -1.78
RTG3	YBL103C	YBL059W	P34224	193 aa		3.91	□□□□□ -1.78
RTG3	YBL103C	VPS38	Q05919	439 aa		3.91	□□□□□ -1.78
RTG3	YBL103C	ENT1	Q12518	454 aa		3.91	□□□□□ -1.78
RTG3	YBL103C	YJR112W-A	Q3E743	109 aa		3.91	□□□□□ -1.78
RTG3	YBL103C	GAL80	P04387	435 aa		3.9	□□□□□ -1.79
RTG3	YBL103C	HEM15	P16622	393 aa		3.9	□□□□□ -1.79
RTG3	YBL103C	YIM1	P28625	365 aa		3.9	□□□□□ -1.79
RTG3	YBL103C	YFL067W	P43537	175 aa		3.9	□□□□□ -1.79
RTG3	YBL103C	ELP3	Q02908	557 aa	Known RBP	3.9	□□□□□ -1.79
RTG3	YBL103C	PBA1	Q05778	276 aa		3.9	□□□□□ -1.79
RTG3	YBL103C	ERV2	Q12284	196 aa		3.9	□□□□□ -1.79
RTG3	YBL103C	AAC3	P18238	307 aa		3.89	□□□□□ -1.79
RTG3	YBL103C	NDI1	P32340	513 aa		3.89	□□□□□ -1.79
RTG3	YBL103C	ATP11	P32453	318 aa		3.89	□□□□□ -1.79
RTG3	YBL103C	PAD1	P33751	242 aa	Known RBP RIP-Chip data	3.89	□□□□□ -1.79	not detected
RTG3	YBL103C	RSM22	P36056	628 aa		3.89	□□□□□ -1.79
RTG3	YBL103C	REG2	P38232	338 aa		3.89	□□□□□ -1.79
RTG3	YBL103C	KEL1	P38853	1164 aa	Known RBP	3.89	□□□□□ -1.79
RTG3	YBL103C	MRX6	P48564	524 aa		3.89	□□□□□ -1.79
RTG3	YBL103C	CAF40	P53829	373 aa		3.89	□□□□□ -1.79
RTG3	YBL103C	YDR056C	Q12025	205 aa		3.89	□□□□□ -1.79
RTG3	YBL103C	RCN2	Q12044	265 aa		3.89	□□□□□ -1.79
RTG3	YBL103C	SEM1	O94742	89 aa		3.88	□□□□□ -1.79
RTG3	YBL103C	HSC82	P15108	705 aa	Known RBP	3.88	□□□□□ -1.79
RTG3	YBL103C	PRD1	P25375	712 aa		3.88	□□□□□ -1.79
RTG3	YBL103C	MFT1	P33441	392 aa	Known RBP	3.88	□□□□□ -1.79
RTG3	YBL103C	WBP1	P33767	430 aa	Known RBP	3.88	□□□□□ -1.79
RTG3	YBL103C	RRT5	P43607	289 aa		3.88	□□□□□ -1.79
RTG3	YBL103C	ART5	P53244	586 aa	Known RBP	3.88	□□□□□ -1.79
RTG3	YBL103C	FIN1	Q03898	291 aa		3.88	□□□□□ -1.79
RTG3	YBL103C	PAL1	Q05518	499 aa	Known RBP	3.88	□□□□□ -1.79
RTG3	YBL103C	CTI6	Q08923	506 aa		3.88	□□□□□ -1.79
RTG3	YBL103C	THP3	Q12049	470 aa	Known RBP	3.88	□□□□□ -1.79
RTG3	YBL103C	TMS1	Q12116	473 aa		3.88	□□□□□ -1.79
RTG3	YBL103C	AVL9	Q12500	764 aa		3.88	□□□□□ -1.79
RTG3	YBL103C	RAV1	P47104	1357 aa		3.88	□□□□□ -1.79
RTG3	YBL103C	PEP3	P27801	918 aa		3.87	□□□□□ -1.79
RTG3	YBL103C	GLC7	P32598	312 aa	Known RBP	3.87	□□□□□ -1.79
RTG3	YBL103C	NOP16	P40007	231 aa	Known RBP	3.87	□□□□□ -1.79
RTG3	YBL103C	VID27	P40157	782 aa		3.87	□□□□□ -1.79
RTG3	YBL103C	SYG1	P40528	902 aa		3.87	□□□□□ -1.79
RTG3	YBL103C	POP1	P41812	875 aa		3.87	□□□□□ -1.79
RTG3	YBL103C	UPF3	P48412	387 aa	Known RBP	3.87	□□□□□ -1.79
RTG3	YBL103C	CAF130	P53280	1122 aa	Predicted RBP	3.87	□□□□□ -1.79
RTG3	YBL103C	BTN2	P53286	410 aa		3.87	□□□□□ -1.79
RTG3	YBL103C	TMC1	Q08422	150 aa	Predicted RBP	3.87	□□□□□ -1.79
RTG3	YBL103C	HHF1	P02309	103 aa	Known RBP	3.86	□□□□□ -1.79
RTG3	YBL103C	CBS1	P14066	229 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	NAT2	P37293	288 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	MUM2	P38236	366 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	RRT2	P38332	387 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	ERP2	P39704	215 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	YGR066C	P53242	292 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	RRN11	Q04712	507 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	MFB1	Q04922	465 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	BSC6	Q08280	497 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	ESA1	Q08649	445 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	BRR1	Q99177	341 aa	Predicted RBP	3.86	□□□□□ -1.79
RTG3	YBL103C	CPR4	P25334	318 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	SWD3	P38123	315 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	YGR210C	P42942	411 aa		3.86	□□□□□ -1.79
RTG3	YBL103C	ISC1	P40015	477 aa	Known RBP	3.85	□□□□□ -1.79
RTG3	YBL103C	DOT5	P40553	215 aa		3.85	□□□□□ -1.79
RTG3	YBL103C	SDT1	P53078	280 aa		3.85	□□□□□ -1.79
RTG3	YBL103C	POP6	P53218	158 aa		3.85	□□□□□ -1.79
RTG3	YBL103C	GOR1	P53839	350 aa		3.85	□□□□□ -1.79
RTG3	YBL103C	SLG1	P54867	378 aa		3.85	□□□□□ -1.79
RTG3	YBL103C	MRPL35	Q06678	367 aa		3.85	□□□□□ -1.79
RTG3	YBL103C	CLN3	P13365	580 aa		3.84	□□□□□ -1.8
RTG3	YBL103C	NOP4	P37838	685 aa	Known RBP	3.84	□□□□□ -1.8
RTG3	YBL103C	SRO77	P38163	1010 aa		3.84	□□□□□ -1.8
RTG3	YBL103C	PTH1	P38876	190 aa	Known RBP	3.84	□□□□□ -1.8
RTG3	YBL103C	RRG7	Q08774	242 aa	Predicted RBP	3.84	□□□□□ -1.8
RTG3	YBL103C	RPL31B	P0C2H9	113 aa	Known RBP	3.83	□□□□□ -1.8
RTG3	YBL103C	OLE1	P21147	510 aa	Known RBP	3.83	□□□□□ -1.8
RTG3	YBL103C	YCR100C	P25606	316 aa		3.83	□□□□□ -1.8
RTG3	YBL103C	MTC6	P38849	526 aa		3.83	□□□□□ -1.8
RTG3	YBL103C	YMR147W	P40218	223 aa	Known RBP	3.83	□□□□□ -1.8
RTG3	YBL103C	PET130	P47065	347 aa		3.83	□□□□□ -1.8
RTG3	YBL103C	OGG1	P53397	376 aa	Predicted RBP	3.83	□□□□□ -1.8
RTG3	YBL103C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	3.83	□□□□□ -1.8	not detected
RTG3	YBL103C	LEU4	P06208	619 aa	Known RBP	3.82	□□□□□ -1.8
RTG3	YBL103C	TIS11	P47977	285 aa		3.82	□□□□□ -1.8
RTG3	YBL103C	OCA1	P50946	238 aa	Predicted RBP	3.82	□□□□□ -1.8
RTG3	YBL103C	VPS75	P53853	264 aa		3.82	□□□□□ -1.8
RTG3	YBL103C	TSR1	Q07381	788 aa	Known RBP	3.82	□□□□□ -1.8
RTG3	YBL103C	HRT3	Q12347	344 aa		3.82	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 36.5 ms