RNA–Protein interactions for RNA: YPL004C

LSP1, Transcript of Eisosome core component, yeastyeast

Gene LSP1, Length 1,026 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSP1YPL004C RRP5Q05022 1729 aaKnown RBP10.98□□□□□ -0.65
LSP1YPL004C TY4B-HP0C2J7 1802 aa10.98□□□□□ -0.65
LSP1YPL004C TY4B-JP47024 1803 aa10.98□□□□□ -0.65
LSP1YPL004C PSK1P31374 1356 aa10.98□□□□□ -0.65
LSP1YPL004C YLR419WQ06698 1435 aaKnown RBP10.97□□□□□ -0.65
LSP1YPL004C REB1P21538 810 aa10.95□□□□□ -0.66
LSP1YPL004C SCT1P32784 759 aa10.94□□□□□ -0.66
LSP1YPL004C CHZ1P40019 153 aaPredicted RBP10.94□□□□□ -0.66
LSP1YPL004C ENT1Q12518 454 aa10.94□□□□□ -0.66
LSP1YPL004C ADE6P38972 1358 aaKnown RBP10.93□□□□□ -0.66
LSP1YPL004C ORC1P54784 914 aaPredicted RBP10.93□□□□□ -0.66
LSP1YPL004C YIL055CP40523 627 aaKnown RBP10.92□□□□□ -0.66
LSP1YPL004C PRP45P28004 379 aaPredicted RBP10.9□□□□□ -0.66
LSP1YPL004C ENV9Q08651 330 aa10.9□□□□□ -0.66
LSP1YPL004C MLP1Q02455 1875 aaKnown RBP10.89□□□□□ -0.67
LSP1YPL004C YRF1-2P40105 1681 aa10.89□□□□□ -0.67
LSP1YPL004C LEU2P04173 364 aaPredicted RBP10.88□□□□□ -0.67
LSP1YPL004C PRP43P53131 767 aaKnown RBP10.88□□□□□ -0.67
LSP1YPL004C PRP5P21372 849 aaPredicted RBP10.87□□□□□ -0.67
LSP1YPL004C MTR4P47047 1073 aaKnown RBP10.86□□□□□ -0.67
LSP1YPL004C GLN1P32288 370 aaKnown RBP10.85□□□□□ -0.67
LSP1YPL004C YML133CQ03099 1374 aa10.83□□□□□ -0.68
LSP1YPL004C YLL067CQ07888 1374 aa10.83□□□□□ -0.68
LSP1YPL004C YLL066CQ99208 1374 aa10.83□□□□□ -0.68
LSP1YPL004C IMH1Q06704 911 aaKnown RBP10.83□□□□□ -0.68
LSP1YPL004C FKH1P40466 484 aa10.81□□□□□ -0.68
LSP1YPL004C POL5P39985 1022 aaKnown RBP10.8□□□□□ -0.68
LSP1YPL004C MSB3P48566 633 aaPredicted RBP10.8□□□□□ -0.68
LSP1YPL004C CSE4P36012 229 aa10.79□□□□□ -0.68
LSP1YPL004C RPS24AP0CX31 135 aaKnown RBP10.78□□□□□ -0.68
LSP1YPL004C RPS24BP0CX32 135 aaKnown RBP10.78□□□□□ -0.68
LSP1YPL004C YIL177CP40434 1758 aa10.77□□□□□ -0.68
LSP1YPL004C YJL225CP40889 1758 aa10.77□□□□□ -0.68
LSP1YPL004C YRF1-3P0CX14 1859 aa10.77□□□□□ -0.69
LSP1YPL004C YRF1-7P0CX15 1859 aa10.77□□□□□ -0.69
LSP1YPL004C YRF1-6P53819 1859 aa10.77□□□□□ -0.69
LSP1YPL004C YMR074CQ04773 145 aa10.77□□□□□ -0.69
LSP1YPL004C SLM3Q12093 417 aa10.77□□□□□ -0.69
LSP1YPL004C URB1P34241 1764 aaKnown RBP10.77□□□□□ -0.69
LSP1YPL004C MHP1P43638 1398 aa10.75□□□□□ -0.69
LSP1YPL004C TCB1Q12466 1186 aa10.74□□□□□ -0.69
LSP1YPL004C RTG3P38165 486 aa10.73□□□□□ -0.69
LSP1YPL004C IES2P40154 320 aa10.71□□□□□ -0.69
LSP1YPL004C RSF2P46974 1380 aa10.71□□□□□ -0.69
LSP1YPL004C PDS5Q04264 1277 aa10.71□□□□□ -0.69
LSP1YPL004C FKS3Q04952 1785 aa10.71□□□□□ -0.69
LSP1YPL004C PDI1P17967 522 aaKnown RBP10.69□□□□□ -0.7
LSP1YPL004C APC1P53886 1748 aa10.68□□□□□ -0.7
LSP1YPL004C RTF1P53064 558 aa10.68□□□□□ -0.7
LSP1YPL004C TAP42Q04372 366 aa10.68□□□□□ -0.7
LSP1YPL004C DOT5P40553 215 aa10.66□□□□□ -0.7
LSP1YPL004C ROM2P51862 1356 aaKnown RBP10.65□□□□□ -0.7
LSP1YPL004C LEU3P08638 886 aa10.65□□□□□ -0.7
LSP1YPL004C GRX4P32642 244 aa10.65□□□□□ -0.7
LSP1YPL004C GAS4Q08271 471 aa10.65□□□□□ -0.7
LSP1YPL004C XKS1P42826 600 aa10.64□□□□□ -0.71
LSP1YPL004C DPS1P04802 557 aaKnown RBP10.63□□□□□ -0.71
LSP1YPL004C YEF3P16521 1044 aaKnown RBP10.63□□□□□ -0.71
LSP1YPL004C YCK3P39962 524 aa10.63□□□□□ -0.71
LSP1YPL004C AUS1Q08409 1394 aa10.63□□□□□ -0.71
LSP1YPL004C BUD31P25337 157 aaPredicted RBP10.62□□□□□ -0.71
LSP1YPL004C PRI1P10363 409 aa10.61□□□□□ -0.71
LSP1YPL004C ENP1P38333 483 aaKnown RBP10.61□□□□□ -0.71
LSP1YPL004C FOX2Q02207 900 aaKnown RBP10.6□□□□□ -0.71
LSP1YPL004C HIM1Q06674 414 aa10.6□□□□□ -0.71
LSP1YPL004C YKL133CP36066 463 aa10.59□□□□□ -0.71
LSP1YPL004C RPN11P43588 306 aaKnown RBP10.59□□□□□ -0.71
LSP1YPL004C EDE1P34216 1381 aa10.59□□□□□ -0.71
LSP1YPL004C SEC3P33332 1336 aaKnown RBP10.58□□□□□ -0.71
LSP1YPL004C SNF2P22082 1703 aa10.58□□□□□ -0.72
LSP1YPL004C RCR1P38212 213 aa10.57□□□□□ -0.72
LSP1YPL004C UBP1P25037 809 aa10.56□□□□□ -0.72
LSP1YPL004C SIR4P11978 1358 aa10.55□□□□□ -0.72
LSP1YPL004C MEC3Q02574 474 aa10.54□□□□□ -0.72
LSP1YPL004C COBP00163 385 aa10.53□□□□□ -0.72
LSP1YPL004C KAR2P16474 682 aaKnown RBP10.53□□□□□ -0.72
LSP1YPL004C NPR2P39923 615 aa10.53□□□□□ -0.72
LSP1YPL004C RPO41P13433 1351 aaKnown RBP10.52□□□□□ -0.72
LSP1YPL004C YKR075CP36155 307 aa10.52□□□□□ -0.73
LSP1YPL004C NST1P53935 1240 aa10.52□□□□□ -0.73
LSP1YPL004C LAM6Q08001 693 aa10.52□□□□□ -0.73
LSP1YPL004C YJL181WP46987 611 aa10.51□□□□□ -0.73
LSP1YPL004C TRK1P12685 1235 aa10.5□□□□□ -0.73
LSP1YPL004C YRF1-4O13559 1382 aa10.5□□□□□ -0.73
LSP1YPL004C PRP40P33203 583 aaKnown RBP10.49□□□□□ -0.73
LSP1YPL004C GTT3P39996 337 aa10.49□□□□□ -0.73
LSP1YPL004C ADE16P54113 591 aaKnown RBP10.49□□□□□ -0.73
LSP1YPL004C PSD2P53037 1138 aaKnown RBP10.48□□□□□ -0.73
LSP1YPL004C FRK1Q03002 865 aaPredicted RBP10.48□□□□□ -0.73
LSP1YPL004C RIM15P43565 1770 aa10.47□□□□□ -0.73
LSP1YPL004C LYS4P49367 693 aaPredicted RBP10.47□□□□□ -0.73
LSP1YPL004C BUB1P41695 1021 aaKnown RBP RIP-Chip data10.46□□□□□ -0.73not detected
LSP1YPL004C DSD1P53095 428 aa10.46□□□□□ -0.73
LSP1YPL004C CTF4Q01454 927 aa10.46□□□□□ -0.73
LSP1YPL004C YBL086CP38177 466 aa10.45□□□□□ -0.74
LSP1YPL004C INP54Q08227 384 aaKnown RBP10.45□□□□□ -0.74
LSP1YPL004C PAP2P53632 584 aaKnown RBP10.44□□□□□ -0.74
LSP1YPL004C IOC4Q04213 475 aa10.44□□□□□ -0.74
LSP1YPL004C OSM1P21375 501 aaKnown RBP10.43□□□□□ -0.74
LSP1YPL004C ATG13Q06628 738 aa10.43□□□□□ -0.74
Retrieved 100 of 5,963 RNA–protein pairs in 63.2 ms