RNA–Protein interactions for RNA: YMR107W

SPG4, Transcript of Protein required for high temperature survival during stationary phase, yeastyeast

Gene SPG4, Length 348 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPG4YMR107W MDS3P53094 1487 aa6.79□□□□□ -1.32
SPG4YMR107W ARO1P08566 1588 aaKnown RBP6.78□□□□□ -1.32
SPG4YMR107W CAT8P39113 1433 aa6.77□□□□□ -1.33
SPG4YMR107W MMS1Q06211 1407 aa6.77□□□□□ -1.33
SPG4YMR107W VPS29P38759 282 aa6.77□□□□□ -1.33
SPG4YMR107W URN1Q06525 465 aaKnown RBP6.77□□□□□ -1.33
SPG4YMR107W PIB1Q06651 286 aa6.77□□□□□ -1.33
SPG4YMR107W ROX1P25042 368 aa6.76□□□□□ -1.33
SPG4YMR107W NUP157P40064 1391 aaKnown RBP6.75□□□□□ -1.33
SPG4YMR107W YMR1P47147 688 aaKnown RBP RIP-Chip data6.75□□□□□ -1.33not detected
SPG4YMR107W DBP1P24784 617 aaKnown RBP6.72□□□□□ -1.33
SPG4YMR107W GTT3P39996 337 aa6.72□□□□□ -1.33
SPG4YMR107W RVB2Q12464 471 aaKnown RBP6.72□□□□□ -1.33
SPG4YMR107W YBL029C-AQ3E756 94 aa6.72□□□□□ -1.33
SPG4YMR107W STS1P38637 319 aa6.71□□□□□ -1.34
SPG4YMR107W SLN1P39928 1220 aaPredicted RBP6.71□□□□□ -1.34
SPG4YMR107W YFR006WP43590 535 aa6.71□□□□□ -1.34
SPG4YMR107W IOC4Q04213 475 aa6.71□□□□□ -1.34
SPG4YMR107W PDS5Q04264 1277 aa6.71□□□□□ -1.34
SPG4YMR107W IQG1Q12280 1495 aa6.7□□□□□ -1.34
SPG4YMR107W RPP0P05317 312 aaKnown RBP6.69□□□□□ -1.34
SPG4YMR107W WSC3Q12215 556 aa6.68□□□□□ -1.34
SPG4YMR107W KNS1P32350 737 aaPredicted RBP6.67□□□□□ -1.34
SPG4YMR107W VPS27P40343 622 aaKnown RBP6.67□□□□□ -1.34
SPG4YMR107W CDC45Q08032 650 aa6.67□□□□□ -1.34
SPG4YMR107W PDR11P40550 1411 aa6.67□□□□□ -1.34
SPG4YMR107W YSP2Q06681 1438 aa6.67□□□□□ -1.34
SPG4YMR107W PCT1P13259 424 aa6.66□□□□□ -1.34
SPG4YMR107W RAM2P29703 316 aa6.66□□□□□ -1.34
SPG4YMR107W ORC1P54784 914 aaPredicted RBP6.66□□□□□ -1.34
SPG4YMR107W EDE1P34216 1381 aa6.66□□□□□ -1.34
SPG4YMR107W VNX1P42839 908 aa6.65□□□□□ -1.34
SPG4YMR107W EAF7P53911 425 aaKnown RBP6.65□□□□□ -1.34
SPG4YMR107W LTE1P07866 1435 aa6.65□□□□□ -1.35
SPG4YMR107W DNF2Q12675 1612 aa6.65□□□□□ -1.35
SPG4YMR107W SPO14P36126 1683 aa6.64□□□□□ -1.35
SPG4YMR107W CDC25P04821 1589 aa6.63□□□□□ -1.35
SPG4YMR107W NOT3P06102 836 aaKnown RBP6.63□□□□□ -1.35
SPG4YMR107W SUI2P20459 304 aaKnown RBP6.63□□□□□ -1.35
SPG4YMR107W CTR9P89105 1077 aa6.63□□□□□ -1.35
SPG4YMR107W YOR093CQ12275 1648 aa6.62□□□□□ -1.35
SPG4YMR107W VMA1P17255 1071 aaKnown RBP6.62□□□□□ -1.35
SPG4YMR107W MSP1P28737 362 aa6.61□□□□□ -1.35
SPG4YMR107W DJP1P40564 432 aa6.61□□□□□ -1.35
SPG4YMR107W KIP3P53086 805 aaKnown RBP6.61□□□□□ -1.35
SPG4YMR107W NOP7P53261 605 aaKnown RBP6.61□□□□□ -1.35
SPG4YMR107W DOP1Q03921 1698 aa6.61□□□□□ -1.35
SPG4YMR107W TRM3Q07527 1436 aa6.6□□□□□ -1.35
SPG4YMR107W MAK11P20484 414 aaKnown RBP6.6□□□□□ -1.35
SPG4YMR107W SPP1Q03012 353 aa6.6□□□□□ -1.35
SPG4YMR107W RPO21P04050 1733 aaKnown RBP6.59□□□□□ -1.35
SPG4YMR107W RAV1P47104 1357 aa6.59□□□□□ -1.35
SPG4YMR107W NUP192P47054 1683 aa6.59□□□□□ -1.35
SPG4YMR107W YEF3P16521 1044 aaKnown RBP6.59□□□□□ -1.35
SPG4YMR107W PAF1P38351 445 aa6.59□□□□□ -1.35
SPG4YMR107W NAB6Q03735 1134 aaKnown RBP RIP-Chip data6.59□□□□□ -1.35not detected
SPG4YMR107W RTC1Q08281 1341 aa6.58□□□□□ -1.36
SPG4YMR107W SIS1P25294 352 aaKnown RBP6.58□□□□□ -1.36
SPG4YMR107W LEO1P38439 464 aa6.58□□□□□ -1.36
SPG4YMR107W YGR130CP53278 816 aa6.58□□□□□ -1.36
SPG4YMR107W BUD3P25558 1636 aa6.58□□□□□ -1.36
SPG4YMR107W HAP1P0CE41 1502 aa6.57□□□□□ -1.36
SPG4YMR107W YRB30P53107 440 aaPredicted RBP6.57□□□□□ -1.36
SPG4YMR107W YOL036WQ08206 761 aa6.57□□□□□ -1.36
SPG4YMR107W TIF11P38912 153 aaKnown RBP6.56□□□□□ -1.36
SPG4YMR107W SET4P42948 560 aa6.56□□□□□ -1.36
SPG4YMR107W SAM3Q08986 587 aa6.56□□□□□ -1.36
SPG4YMR107W IML1P47170 1584 aa6.56□□□□□ -1.36
SPG4YMR107W DRS2P39524 1355 aa6.56□□□□□ -1.36
SPG4YMR107W TRK1P12685 1235 aa6.55□□□□□ -1.36
SPG4YMR107W YDL144CQ07589 356 aa6.55□□□□□ -1.36
SPG4YMR107W LSP1Q12230 341 aaKnown RBP6.55□□□□□ -1.36
SPG4YMR107W MSB4Q12317 492 aa6.55□□□□□ -1.36
SPG4YMR107W MET5P47169 1442 aa6.55□□□□□ -1.36
SPG4YMR107W MIF2P35201 549 aa6.54□□□□□ -1.36
SPG4YMR107W TEA1P47988 759 aa6.54□□□□□ -1.36
SPG4YMR107W RRP46P53256 223 aaPredicted RBP6.54□□□□□ -1.36
SPG4YMR107W RPA190P10964 1664 aaKnown RBP6.53□□□□□ -1.36
SPG4YMR107W NTE1Q04958 1679 aa6.53□□□□□ -1.36
SPG4YMR107W BUD21Q08492 214 aaPredicted RBP6.53□□□□□ -1.36
SPG4YMR107W RLF2Q12495 606 aa6.53□□□□□ -1.36
SPG4YMR107W VPS24P36095 224 aaKnown RBP6.52□□□□□ -1.37
SPG4YMR107W SNF2P22082 1703 aa6.52□□□□□ -1.37
SPG4YMR107W CHC1P22137 1653 aaKnown RBP6.52□□□□□ -1.37
SPG4YMR107W COQ8P27697 501 aa6.51□□□□□ -1.37
SPG4YMR107W EDS1P38073 919 aa6.51□□□□□ -1.37
SPG4YMR107W ARL1P38116 183 aaKnown RBP6.51□□□□□ -1.37
SPG4YMR107W ULI1P43604 169 aa6.51□□□□□ -1.37
SPG4YMR107W VMR1P38735 1592 aa6.5□□□□□ -1.37
SPG4YMR107W NAP1P25293 417 aaKnown RBP6.5□□□□□ -1.37
SPG4YMR107W FPR3P38911 411 aaKnown RBP6.5□□□□□ -1.37
SPG4YMR107W YIL092WP40497 633 aa6.5□□□□□ -1.37
SPG4YMR107W CKB1P43639 278 aa6.5□□□□□ -1.37
SPG4YMR107W EAP1P36041 632 aaKnown RBP6.49□□□□□ -1.37
SPG4YMR107W MNN4P36044 1178 aa6.49□□□□□ -1.37
SPG4YMR107W FKH1P40466 484 aa6.49□□□□□ -1.37
SPG4YMR107W RRT14P40470 206 aa6.49□□□□□ -1.37
SPG4YMR107W MPP10P47083 593 aaKnown RBP6.49□□□□□ -1.37
SPG4YMR107W KRE33P53914 1056 aaKnown RBP6.49□□□□□ -1.37
SPG4YMR107W NOP53Q12080 455 aaKnown RBP6.49□□□□□ -1.37
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms