RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C YML020WQ03722 664 aa3.69□□□□□ -1.82
UBP11YKR098C SLX8P40072 274 aa3.68□□□□□ -1.82
UBP11YKR098C PEX21P50091 288 aa3.68□□□□□ -1.82
UBP11YKR098C YPR204WQ08995 1032 aa3.68□□□□□ -1.82
UBP11YKR098C SUP45P12385 437 aaKnown RBP3.68□□□□□ -1.82
UBP11YKR098C ARG8P18544 423 aa3.68□□□□□ -1.82
UBP11YKR098C TTI1P36097 1038 aa3.68□□□□□ -1.82
UBP11YKR098C RSC30P38781 883 aa3.68□□□□□ -1.82
UBP11YKR098C NOP8Q08287 484 aaPredicted RBP3.68□□□□□ -1.82
UBP11YKR098C CPS1P27614 576 aa3.67□□□□□ -1.82
UBP11YKR098C DPL1Q05567 589 aa3.67□□□□□ -1.82
UBP11YKR098C MID1P41821 548 aa3.66□□□□□ -1.82
UBP11YKR098C MPC54Q08550 464 aa3.66□□□□□ -1.82
UBP11YKR098C YDJ1P25491 409 aaKnown RBP3.66□□□□□ -1.82
UBP11YKR098C SLY41P22215 453 aa3.65□□□□□ -1.82
UBP11YKR098C PML39Q03760 334 aa3.65□□□□□ -1.82
UBP11YKR098C NOB1Q08444 459 aaKnown RBP3.65□□□□□ -1.82
UBP11YKR098C YRR1Q12172 810 aa3.65□□□□□ -1.82
UBP11YKR098C MAK16P10962 306 aaPredicted RBP3.65□□□□□ -1.83
UBP11YKR098C SPT5P27692 1063 aaKnown RBP3.65□□□□□ -1.83
UBP11YKR098C RTF1P53064 558 aa3.65□□□□□ -1.83
UBP11YKR098C YNL115CP53925 644 aa3.65□□□□□ -1.83
UBP11YKR098C ENO2P00925 437 aaKnown RBP3.64□□□□□ -1.83
UBP11YKR098C LAM6Q08001 693 aa3.64□□□□□ -1.83
UBP11YKR098C ENO1P00924 437 aaKnown RBP3.63□□□□□ -1.83
UBP11YKR098C RTG1P32607 177 aa3.63□□□□□ -1.83
UBP11YKR098C MRX10Q05648 414 aa3.63□□□□□ -1.83
UBP11YKR098C ISU2Q12056 156 aa3.63□□□□□ -1.83
UBP11YKR098C RIM21P48565 533 aa3.63□□□□□ -1.83
UBP11YKR098C YNL035CP53962 389 aaKnown RBP3.63□□□□□ -1.83
UBP11YKR098C TRM1P15565 570 aaKnown RBP3.62□□□□□ -1.83
UBP11YKR098C PUP1P25043 261 aa3.62□□□□□ -1.83
UBP11YKR098C NMA111P53920 997 aa3.62□□□□□ -1.83
UBP11YKR098C RPL34AP87262 121 aaPredicted RBP3.62□□□□□ -1.83
UBP11YKR098C PEX29Q03370 554 aa3.62□□□□□ -1.83
UBP11YKR098C NCR1Q12200 1170 aa3.62□□□□□ -1.83
UBP11YKR098C SIS2P36024 562 aa3.62□□□□□ -1.83
UBP11YKR098C BUB1P41695 1021 aaKnown RBP RIP-Chip data3.62□□□□□ -1.83not detected
UBP11YKR098C KEX2P13134 814 aa3.61□□□□□ -1.83
UBP11YKR098C NUD1P32336 851 aa3.61□□□□□ -1.83
UBP11YKR098C PUS6P53294 404 aa3.61□□□□□ -1.83
UBP11YKR098C YML083CQ04526 418 aa3.61□□□□□ -1.83
UBP11YKR098C ERF2Q06551 359 aa3.61□□□□□ -1.83
UBP11YKR098C NAF1P53919 492 aaKnown RBP3.61□□□□□ -1.83
UBP11YKR098C SEC61P32915 480 aa3.6□□□□□ -1.83
UBP11YKR098C CDC3P32457 520 aaKnown RBP3.59□□□□□ -1.83
UBP11YKR098C PEP12P32854 288 aa3.59□□□□□ -1.83
UBP11YKR098C BCK2P33306 851 aa3.59□□□□□ -1.83
UBP11YKR098C TGL4P36165 910 aa3.59□□□□□ -1.83
UBP11YKR098C PDR1P12383 1068 aa3.59□□□□□ -1.84
UBP11YKR098C RDS2P19541 446 aaKnown RBP3.59□□□□□ -1.84
UBP11YKR098C YPP1P46951 817 aa3.59□□□□□ -1.84
UBP11YKR098C MCM16Q12262 181 aa3.58□□□□□ -1.84
UBP11YKR098C STR2P47164 639 aa3.58□□□□□ -1.84
UBP11YKR098C TBF1Q02457 562 aa3.58□□□□□ -1.84
UBP11YKR098C AGE1Q04412 482 aa3.58□□□□□ -1.84
UBP11YKR098C NPL4P33755 580 aa3.57□□□□□ -1.84
UBP11YKR098C SSF1P38789 453 aaPredicted RBP3.57□□□□□ -1.84
UBP11YKR098C ISM1P48526 1002 aa3.57□□□□□ -1.84
UBP11YKR098C SEC2P17065 759 aa3.56□□□□□ -1.84
UBP11YKR098C SLD2P34252 453 aa3.56□□□□□ -1.84
UBP11YKR098C MRX12P47084 519 aa3.56□□□□□ -1.84
UBP11YKR098C TUB4P53378 473 aa3.56□□□□□ -1.84
UBP11YKR098C YDL129WQ07555 291 aa3.56□□□□□ -1.84
UBP11YKR098C YDL206WQ12424 762 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-DR4O74302 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-HP0C2I4 478 aaKnown RBP3.56□□□□□ -1.84
UBP11YKR098C TY1A-AP0CX57 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-PR1P0CX58 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-ORP0CX59 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-PR2P0CX60 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-DR5P0CX65 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-ER2P0CX66 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-GR3P0CX67 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-LR1P0CX68 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-MR2P0CX69 440 aa3.56□□□□□ -1.84
UBP11YKR098C ISF1P32488 338 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-JR2P47099 440 aa3.56□□□□□ -1.84
UBP11YKR098C HAP5Q02516 242 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-DR1Q03856 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-ML1Q04706 440 aaKnown RBP3.56□□□□□ -1.84
UBP11YKR098C TY1A-BRQ12217 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-NL2Q12470 440 aa3.56□□□□□ -1.84
UBP11YKR098C TY1A-GR2Q12485 440 aa3.56□□□□□ -1.84
UBP11YKR098C TFG1P41895 735 aaPredicted RBP3.55□□□□□ -1.84
UBP11YKR098C EMP47P43555 445 aa3.55□□□□□ -1.84
UBP11YKR098C ECM23Q02710 187 aa3.55□□□□□ -1.84
UBP11YKR098C HAT1Q12341 374 aa3.55□□□□□ -1.84
UBP11YKR098C RAM1P22007 431 aa3.55□□□□□ -1.84
UBP11YKR098C KTR7P40504 517 aa3.55□□□□□ -1.84
UBP11YKR098C ARH1P48360 493 aa3.55□□□□□ -1.84
UBP11YKR098C RPA14P50106 137 aa3.55□□□□□ -1.84
UBP11YKR098C SEN54Q02825 467 aaPredicted RBP3.55□□□□□ -1.84
UBP11YKR098C GCD11P32481 527 aaKnown RBP3.54□□□□□ -1.84
UBP11YKR098C YDR344CQ05510 147 aa3.54□□□□□ -1.84
UBP11YKR098C YPR097WQ06839 1073 aa3.54□□□□□ -1.84
UBP11YKR098C GAL2P13181 574 aa3.53□□□□□ -1.84
UBP11YKR098C YPR084WQ06821 456 aa3.53□□□□□ -1.84
UBP11YKR098C FRA1Q07825 749 aa3.53□□□□□ -1.84
UBP11YKR098C BUD20Q08004 166 aaPredicted RBP3.53□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 97.1 ms