RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	YEF3	P16521	1044 aa	Known RBP	4.78	□□□□□ -1.64
SSM4	YIL030C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
SSM4	YIL030C	FKH1	P40466	484 aa		4.78	□□□□□ -1.64
SSM4	YIL030C	RTT106	P40161	455 aa		4.77	□□□□□ -1.65
SSM4	YIL030C	RIM15	P43565	1770 aa		4.76	□□□□□ -1.65
SSM4	YIL030C	NST1	P53935	1240 aa		4.76	□□□□□ -1.65
SSM4	YIL030C	KRE5	P22023	1365 aa		4.75	□□□□□ -1.65
SSM4	YIL030C	PSD2	P53037	1138 aa	Known RBP	4.74	□□□□□ -1.65
SSM4	YIL030C	ADE6	P38972	1358 aa	Known RBP	4.74	□□□□□ -1.65
SSM4	YIL030C	CDC45	Q08032	650 aa		4.73	□□□□□ -1.65
SSM4	YIL030C	FIG2	P25653	1609 aa		4.73	□□□□□ -1.65
SSM4	YIL030C	LSP1	Q12230	341 aa	Known RBP	4.72	□□□□□ -1.65
SSM4	YIL030C	VPS27	P40343	622 aa	Known RBP	4.72	□□□□□ -1.65
SSM4	YIL030C	RRP46	P53256	223 aa	Predicted RBP	4.72	□□□□□ -1.65
SSM4	YIL030C	YAP3	P38749	330 aa		4.71	□□□□□ -1.66
SSM4	YIL030C	PRP43	P53131	767 aa	Known RBP	4.71	□□□□□ -1.66
SSM4	YIL030C	KRE33	P53914	1056 aa	Known RBP	4.71	□□□□□ -1.66
SSM4	YIL030C	HEF3	P53978	1044 aa	Known RBP	4.71	□□□□□ -1.66
SSM4	YIL030C	SNF7	P39929	240 aa	Known RBP	4.7	□□□□□ -1.66
SSM4	YIL030C	IFH1	P39520	1085 aa		4.69	□□□□□ -1.66
SSM4	YIL030C	LYS2	P07702	1392 aa		4.69	□□□□□ -1.66
SSM4	YIL030C	ESL2	P36168	1195 aa		4.68	□□□□□ -1.66
SSM4	YIL030C	TCB2	P48231	1178 aa		4.68	□□□□□ -1.66
SSM4	YIL030C	PDS5	Q04264	1277 aa		4.67	□□□□□ -1.66
SSM4	YIL030C	RVB2	Q12464	471 aa	Known RBP	4.67	□□□□□ -1.66
SSM4	YIL030C	SCT1	P32784	759 aa		4.66	□□□□□ -1.66
SSM4	YIL030C	TAP42	Q04372	366 aa		4.66	□□□□□ -1.66
SSM4	YIL030C	ROM2	P51862	1356 aa	Known RBP	4.66	□□□□□ -1.66
SSM4	YIL030C	SUI2	P20459	304 aa	Known RBP	4.66	□□□□□ -1.66
SSM4	YIL030C	EBP2	P36049	427 aa	Known RBP	4.65	□□□□□ -1.66
SSM4	YIL030C	PIL1	P53252	339 aa	Known RBP	4.65	□□□□□ -1.66
SSM4	YIL030C	BUD21	Q08492	214 aa	Predicted RBP	4.65	□□□□□ -1.66
SSM4	YIL030C	NOT3	P06102	836 aa	Known RBP	4.65	□□□□□ -1.67
SSM4	YIL030C	HAP5	Q02516	242 aa		4.64	□□□□□ -1.67
SSM4	YIL030C	HKR1	P41809	1802 aa		4.64	□□□□□ -1.67
SSM4	YIL030C	YPR148C	Q06523	435 aa		4.63	□□□□□ -1.67
SSM4	YIL030C	CLC1	P17891	233 aa		4.63	□□□□□ -1.67
SSM4	YIL030C	ROX1	P25042	368 aa		4.63	□□□□□ -1.67
SSM4	YIL030C	HYR1	P40581	163 aa	Known RBP	4.62	□□□□□ -1.67
SSM4	YIL030C	MPE1	P35728	441 aa	Known RBP	4.62	□□□□□ -1.67
SSM4	YIL030C	RRT14	P40470	206 aa		4.62	□□□□□ -1.67
SSM4	YIL030C	RPO41	P13433	1351 aa	Known RBP	4.61	□□□□□ -1.67
SSM4	YIL030C	RAD9	P14737	1309 aa		4.61	□□□□□ -1.67
SSM4	YIL030C	TRK1	P12685	1235 aa		4.61	□□□□□ -1.67
SSM4	YIL030C	YIL092W	P40497	633 aa		4.61	□□□□□ -1.67
SSM4	YIL030C	ALD4	P46367	519 aa	Known RBP	4.61	□□□□□ -1.67
SSM4	YIL030C	YFR016C	P43597	1233 aa	Known RBP	4.6	□□□□□ -1.67
SSM4	YIL030C	CHZ1	P40019	153 aa	Predicted RBP	4.6	□□□□□ -1.67
SSM4	YIL030C	NOP7	P53261	605 aa	Known RBP	4.59	□□□□□ -1.68
SSM4	YIL030C	CDC16	P09798	840 aa		4.58	□□□□□ -1.68
SSM4	YIL030C	KNS1	P32350	737 aa	Predicted RBP	4.58	□□□□□ -1.68
SSM4	YIL030C	IPL1	P38991	367 aa		4.58	□□□□□ -1.68
SSM4	YIL030C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
SSM4	YIL030C	THI22	Q06490	572 aa		4.57	□□□□□ -1.68
SSM4	YIL030C	PCT1	P13259	424 aa		4.57	□□□□□ -1.68
SSM4	YIL030C	AIM44	Q99299	758 aa		4.57	□□□□□ -1.68
SSM4	YIL030C	SLN1	P39928	1220 aa	Predicted RBP	4.56	□□□□□ -1.68
SSM4	YIL030C	YJR008W	P47085	338 aa		4.56	□□□□□ -1.68
SSM4	YIL030C	PXL1	P36166	706 aa		4.56	□□□□□ -1.68
SSM4	YIL030C	MSP1	P28737	362 aa		4.55	□□□□□ -1.68
SSM4	YIL030C	RSF2	P46974	1380 aa		4.55	□□□□□ -1.68
SSM4	YIL030C	RPC31	P17890	251 aa		4.55	□□□□□ -1.68
SSM4	YIL030C	PRD1	P25375	712 aa		4.54	□□□□□ -1.68
SSM4	YIL030C	SAP155	P43612	1002 aa		4.54	□□□□□ -1.68
SSM4	YIL030C	SPE2	P21182	396 aa		4.54	□□□□□ -1.68
SSM4	YIL030C	RTG3	P38165	486 aa		4.54	□□□□□ -1.68
SSM4	YIL030C	ECM23	Q02710	187 aa		4.54	□□□□□ -1.68
SSM4	YIL030C	BDH2	P39713	417 aa		4.53	□□□□□ -1.68
SSM4	YIL030C	PAF1	P38351	445 aa		4.53	□□□□□ -1.68
SSM4	YIL030C	GCD7	P32502	381 aa	Predicted RBP	4.52	□□□□□ -1.69
SSM4	YIL030C	RAD50	P12753	1312 aa		4.52	□□□□□ -1.69
SSM4	YIL030C	RLF2	Q12495	606 aa		4.52	□□□□□ -1.69
SSM4	YIL030C	HGH1	P48362	394 aa	Known RBP	4.51	□□□□□ -1.69
SSM4	YIL030C	KIP3	P53086	805 aa	Known RBP	4.51	□□□□□ -1.69
SSM4	YIL030C	POL32	P47110	350 aa		4.51	□□□□□ -1.69
SSM4	YIL030C	MYO1	P08964	1928 aa		4.5	□□□□□ -1.69
SSM4	YIL030C	RPS19A	P07280	144 aa	Known RBP	4.5	□□□□□ -1.69
SSM4	YIL030C	RPS19B	P07281	144 aa	Predicted RBP	4.5	□□□□□ -1.69
SSM4	YIL030C	ELM1	P32801	640 aa		4.5	□□□□□ -1.69
SSM4	YIL030C	TEA1	P47988	759 aa		4.5	□□□□□ -1.69
SSM4	YIL030C	SAC3	P46674	1301 aa		4.49	□□□□□ -1.69
SSM4	YIL030C	TYS1	P36421	394 aa	Known RBP	4.49	□□□□□ -1.69
SSM4	YIL030C	CKB1	P43639	278 aa		4.49	□□□□□ -1.69
SSM4	YIL030C	CIR1	P42940	261 aa		4.49	□□□□□ -1.69
SSM4	YIL030C	YDL144C	Q07589	356 aa		4.49	□□□□□ -1.69
SSM4	YIL030C	TAF5	P38129	798 aa		4.48	□□□□□ -1.69
SSM4	YIL030C	RPN1	P38764	993 aa	Known RBP	4.48	□□□□□ -1.69
SSM4	YIL030C	FKS1	P38631	1876 aa	Known RBP	4.47	□□□□□ -1.69
SSM4	YIL030C	GRX4	P32642	244 aa		4.47	□□□□□ -1.69
SSM4	YIL030C	CPS1	P27614	576 aa		4.46	□□□□□ -1.69
SSM4	YIL030C	TRL1	P09880	827 aa	Known RBP	4.46	□□□□□ -1.7
SSM4	YIL030C	CCC2	P38995	1004 aa		4.46	□□□□□ -1.7
SSM4	YIL030C	MTC1	P47018	478 aa	Known RBP	4.46	□□□□□ -1.7
SSM4	YIL030C	YNL050C	P53952	270 aa		4.46	□□□□□ -1.7
SSM4	YIL030C	YDR306C	Q06640	478 aa		4.46	□□□□□ -1.7
SSM4	YIL030C	CAB3	P36076	571 aa		4.46	□□□□□ -1.7
SSM4	YIL030C	MBR1	P23493	339 aa		4.45	□□□□□ -1.7
SSM4	YIL030C	PPH3	P32345	308 aa		4.44	□□□□□ -1.7
SSM4	YIL030C	VPS24	P36095	224 aa	Known RBP	4.44	□□□□□ -1.7
SSM4	YIL030C	SET1	P38827	1080 aa	Known RBP	4.44	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 37.3 ms