RNA–Protein interactions for RNA: YER013W

PRP22, Transcript of DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase, yeast

Gene PRP22, Length 3,438 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP22	YER013W	YDR090C	Q03193	310 aa		4.31	□□□□□ -1.72
PRP22	YER013W	YCF1	P39109	1515 aa	Known RBP	4.31	□□□□□ -1.72
PRP22	YER013W	PAF1	P38351	445 aa		4.31	□□□□□ -1.72
PRP22	YER013W	ESP1	Q03018	1630 aa		4.31	□□□□□ -1.72
PRP22	YER013W	RAD26	P40352	1085 aa		4.3	□□□□□ -1.72
PRP22	YER013W	TY1B-DR3	Q99231	1755 aa		4.3	□□□□□ -1.72
PRP22	YER013W	TY2B-B	Q12491	1770 aa		4.29	□□□□□ -1.72
PRP22	YER013W	QCR6	P00127	147 aa		4.29	□□□□□ -1.72
PRP22	YER013W	MNN4	P36044	1178 aa		4.29	□□□□□ -1.72
PRP22	YER013W	FPR4	Q06205	392 aa	Predicted RBP	4.29	□□□□□ -1.72
PRP22	YER013W	MAK21	Q12176	1025 aa	Known RBP	4.29	□□□□□ -1.72
PRP22	YER013W	KNS1	P32350	737 aa	Predicted RBP	4.29	□□□□□ -1.72
PRP22	YER013W	SWE1	P32944	819 aa		4.28	□□□□□ -1.72
PRP22	YER013W	FUN12	P39730	1002 aa	Known RBP	4.28	□□□□□ -1.72
PRP22	YER013W	BMS1	Q08965	1183 aa	Known RBP	4.28	□□□□□ -1.72
PRP22	YER013W	BYE1	P36106	594 aa		4.28	□□□□□ -1.72
PRP22	YER013W	YNL011C	P53980	444 aa		4.28	□□□□□ -1.72
PRP22	YER013W	PSH1	Q12161	406 aa		4.28	□□□□□ -1.72
PRP22	YER013W	TAF2	P23255	1407 aa		4.28	□□□□□ -1.72
PRP22	YER013W	GLN1	P32288	370 aa	Known RBP	4.27	□□□□□ -1.73
PRP22	YER013W	EDE1	P34216	1381 aa		4.27	□□□□□ -1.73
PRP22	YER013W	ETT1	Q08421	412 aa	Known RBP	4.27	□□□□□ -1.73
PRP22	YER013W	UBP14	P38237	781 aa	Known RBP	4.26	□□□□□ -1.73
PRP22	YER013W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.26	□□□□□ -1.73	not detected
PRP22	YER013W	TFB3	Q03290	321 aa		4.26	□□□□□ -1.73
PRP22	YER013W	YML020W	Q03722	664 aa		4.26	□□□□□ -1.73
PRP22	YER013W	RPA190	P10964	1664 aa	Known RBP	4.26	□□□□□ -1.73
PRP22	YER013W	SPT2	P06843	333 aa	Predicted RBP	4.25	□□□□□ -1.73
PRP22	YER013W	SCY1	P53009	804 aa		4.25	□□□□□ -1.73
PRP22	YER013W	GRX3	Q03835	250 aa		4.25	□□□□□ -1.73
PRP22	YER013W	SUB2	Q07478	446 aa	Known RBP	4.25	□□□□□ -1.73
PRP22	YER013W	MSH3	P25336	1018 aa		4.25	□□□□□ -1.73
PRP22	YER013W	MED8	P38304	223 aa		4.25	□□□□□ -1.73
PRP22	YER013W	PKC1	P24583	1151 aa		4.25	□□□□□ -1.73
PRP22	YER013W	PTC3	P34221	468 aa	Known RBP	4.25	□□□□□ -1.73
PRP22	YER013W	NMD2	P38798	1089 aa	Known RBP	4.24	□□□□□ -1.73
PRP22	YER013W	POL1	P13382	1468 aa		4.24	□□□□□ -1.73
PRP22	YER013W	NOT3	P06102	836 aa	Known RBP	4.24	□□□□□ -1.73
PRP22	YER013W	EAF7	P53911	425 aa	Known RBP	4.24	□□□□□ -1.73
PRP22	YER013W	TY3B-G	Q99315	1547 aa		4.24	□□□□□ -1.73
PRP22	YER013W	DJP1	P40564	432 aa		4.24	□□□□□ -1.73
PRP22	YER013W	UBP10	P53874	792 aa	Predicted RBP	4.24	□□□□□ -1.73
PRP22	YER013W	MAP2	P38174	421 aa	Known RBP	4.23	□□□□□ -1.73
PRP22	YER013W	KTR1	P27810	393 aa	Known RBP	4.23	□□□□□ -1.73
PRP22	YER013W	RTT106	P40161	455 aa		4.23	□□□□□ -1.73
PRP22	YER013W	PIL1	P53252	339 aa	Known RBP	4.23	□□□□□ -1.73
PRP22	YER013W	PLP2	Q12017	286 aa		4.23	□□□□□ -1.73
PRP22	YER013W	ECM1	P39715	212 aa		4.22	□□□□□ -1.73
PRP22	YER013W	ECM16	Q04217	1267 aa	Known RBP	4.22	□□□□□ -1.73
PRP22	YER013W	YLR326W	Q06170	240 aa	Known RBP	4.22	□□□□□ -1.73
PRP22	YER013W	SMC4	Q12267	1418 aa		4.22	□□□□□ -1.73
PRP22	YER013W	NST1	P53935	1240 aa		4.22	□□□□□ -1.73
PRP22	YER013W	GEF1	P37020	779 aa		4.21	□□□□□ -1.73
PRP22	YER013W	YPP1	P46951	817 aa		4.21	□□□□□ -1.73
PRP22	YER013W	PCT1	P13259	424 aa		4.21	□□□□□ -1.74
PRP22	YER013W	DBP1	P24784	617 aa	Known RBP	4.21	□□□□□ -1.74
PRP22	YER013W	SAP190	P36123	1033 aa		4.21	□□□□□ -1.74
PRP22	YER013W	SSA1	P10591	642 aa	Known RBP	4.21	□□□□□ -1.74
PRP22	YER013W	TRM3	Q07527	1436 aa		4.2	□□□□□ -1.74
PRP22	YER013W	MIF2	P35201	549 aa		4.2	□□□□□ -1.74
PRP22	YER013W	SMC3	P47037	1230 aa		4.2	□□□□□ -1.74
PRP22	YER013W	GEA1	P47102	1408 aa	Predicted RBP	4.2	□□□□□ -1.74
PRP22	YER013W	TY1B-JR2	P47100	1755 aa	Known RBP	4.2	□□□□□ -1.74
PRP22	YER013W	TY1B-ER2	Q03619	1755 aa		4.2	□□□□□ -1.74
PRP22	YER013W	TY1B-MR1	Q04214	1755 aa		4.2	□□□□□ -1.74
PRP22	YER013W	TY1B-MR2	Q04670	1755 aa	Known RBP	4.2	□□□□□ -1.74
PRP22	YER013W	TY1B-LR1	Q12088	1755 aa	Known RBP	4.2	□□□□□ -1.74
PRP22	YER013W	TY1B-NL1	Q12112	1755 aa		4.2	□□□□□ -1.74
PRP22	YER013W	TY1B-GR1	Q12141	1755 aa		4.2	□□□□□ -1.74
PRP22	YER013W	TY1B-BL	Q12490	1755 aa		4.2	□□□□□ -1.74
PRP22	YER013W	RNA1	P11745	407 aa	Known RBP	4.2	□□□□□ -1.74
PRP22	YER013W	SOL3	P38858	249 aa		4.2	□□□□□ -1.74
PRP22	YER013W	KIP3	P53086	805 aa	Known RBP	4.2	□□□□□ -1.74
PRP22	YER013W	NOP58	Q12499	511 aa	Known RBP	4.2	□□□□□ -1.74
PRP22	YER013W	PDR5	P33302	1511 aa	Known RBP	4.19	□□□□□ -1.74
PRP22	YER013W	CLB5	P30283	435 aa		4.19	□□□□□ -1.74
PRP22	YER013W	BNI1	P41832	1953 aa		4.19	□□□□□ -1.74
PRP22	YER013W	ULS1	Q08562	1619 aa		4.19	□□□□□ -1.74
PRP22	YER013W	PSE1	P32337	1089 aa	Known RBP	4.19	□□□□□ -1.74
PRP22	YER013W	RIX1	P38883	763 aa	Predicted RBP	4.19	□□□□□ -1.74
PRP22	YER013W	HGH1	P48362	394 aa	Known RBP	4.19	□□□□□ -1.74
PRP22	YER013W	SLX8	P40072	274 aa		4.18	□□□□□ -1.74
PRP22	YER013W	ATG32	P40458	529 aa		4.18	□□□□□ -1.74
PRP22	YER013W	YFR006W	P43590	535 aa		4.18	□□□□□ -1.74
PRP22	YER013W	MRX12	P47084	519 aa		4.18	□□□□□ -1.74
PRP22	YER013W	MDG1	P53885	366 aa		4.18	□□□□□ -1.74
PRP22	YER013W	RLP24	Q07915	199 aa	Known RBP	4.18	□□□□□ -1.74
PRP22	YER013W	MSP1	P28737	362 aa		4.18	□□□□□ -1.74
PRP22	YER013W	BIM1	P40013	344 aa		4.18	□□□□□ -1.74
PRP22	YER013W	SNF2	P22082	1703 aa		4.18	□□□□□ -1.74
PRP22	YER013W	ORC6	P38826	435 aa		4.18	□□□□□ -1.74
PRP22	YER013W	NUP157	P40064	1391 aa	Known RBP	4.17	□□□□□ -1.74
PRP22	YER013W	GAP1	P19145	602 aa	Predicted RBP	4.17	□□□□□ -1.74
PRP22	YER013W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
PRP22	YER013W	ATF2	P53296	535 aa		4.17	□□□□□ -1.74
PRP22	YER013W	HAA1	Q12753	694 aa	Known RBP	4.17	□□□□□ -1.74
PRP22	YER013W	NUP159	P40477	1460 aa		4.17	□□□□□ -1.74
PRP22	YER013W	HSP82	P02829	709 aa	Known RBP	4.17	□□□□□ -1.74
PRP22	YER013W	VPS72	Q03388	795 aa		4.17	□□□□□ -1.74
PRP22	YER013W	SRP54	P20424	541 aa	Known RBP	4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms