RNA–Protein interactions for RNA: ENST00000640219.1

HLA-C-210, Transcript of major histocompatibility complex, class I, C, humanhuman

BASIC

Gene HLA-C, Length 976 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-210ENST00000640219 PREX1Q8TCU6 1659 aa23.22■■□□□ 1.31
HLA-C-210ENST00000640219 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.21■■□□□ 1.31
HLA-C-210ENST00000640219 HECW1Q76N89 1606 aa23.21■■□□□ 1.31
HLA-C-210ENST00000640219 CEBPAP49715 358 aaPredicted RBP23.2■■□□□ 1.3
HLA-C-210ENST00000640219 ARHGEF12Q9NZN5 1544 aa23.18■■□□□ 1.3
HLA-C-210ENST00000640219 STRCQ7RTU9 1775 aa23.18■■□□□ 1.3
HLA-C-210ENST00000640219 SCAPERQ9BY12 1400 aa23.16■■□□□ 1.3
HLA-C-210ENST00000640219 ATP10AO60312 1499 aa23.15■■□□□ 1.3
HLA-C-210ENST00000640219 RANGAP1P46060 587 aaPredicted RBP23.14■■□□□ 1.29
HLA-C-210ENST00000640219 UHRF1BP1Q6BDS2 1440 aa23.14■■□□□ 1.29
HLA-C-210ENST00000640219 C9orf84Q5VXU9 1444 aa23.12■■□□□ 1.29
HLA-C-210ENST00000640219 PTPRTO14522 1441 aa23.09■■□□□ 1.29
HLA-C-210ENST00000640219 PLCH2O75038 1416 aa23.08■■□□□ 1.28
HLA-C-210ENST00000640219 CSRNP3Q8WYN3 585 aa23.05■■□□□ 1.28
HLA-C-210ENST00000640219 SETD1BQ9UPS6 1966 aaKnown RBP23.03■■□□□ 1.28
HLA-C-210ENST00000640219 LTBP4Q8N2S1 1624 aa23.02■■□□□ 1.28
HLA-C-210ENST00000640219 EFCAB2Q5VUJ9 269 aa23.02■■□□□ 1.28
HLA-C-210ENST00000640219 IQSEC2Q5JU85 1478 aa23.01■■□□□ 1.27
HLA-C-210ENST00000640219 CDK13Q14004 1512 aaKnown RBP22.98■■□□□ 1.27
HLA-C-210ENST00000640219 MYT1LQ9UL68 1186 aa22.97■■□□□ 1.27
HLA-C-210ENST00000640219 ZNF518AQ6AHZ1 1483 aa22.95■■□□□ 1.26
HLA-C-210ENST00000640219 AFAP1Q8N556 730 aa22.95■■□□□ 1.26
HLA-C-210ENST00000640219 ESF1Q9H501 851 aaKnown RBP22.94■■□□□ 1.26
HLA-C-210ENST00000640219 C3P01024 1663 aa22.93■■□□□ 1.26
HLA-C-210ENST00000640219 TRAPPC8Q9Y2L5 1435 aa22.92■■□□□ 1.26
HLA-C-210ENST00000640219 NCOA1Q15788 1441 aa22.91■■□□□ 1.26
HLA-C-210ENST00000640219 MYO5CQ9NQX4 1742 aa22.91■■□□□ 1.26
HLA-C-210ENST00000640219 KDM5CP41229 1560 aa22.89■■□□□ 1.26
HLA-C-210ENST00000640219 UBAP1LF5GYI3 381 aa22.89■■□□□ 1.25
HLA-C-210ENST00000640219 DIP2CQ9Y2E4 1556 aa22.89■■□□□ 1.25
HLA-C-210ENST00000640219 REREQ9P2R6 1566 aa22.88■■□□□ 1.25
HLA-C-210ENST00000640219 ATP1B4Q9UN42 357 aaPredicted RBP22.87■■□□□ 1.25
HLA-C-210ENST00000640219 CDK11AQ9UQ88 783 aaPredicted RBP22.85■■□□□ 1.25
HLA-C-210ENST00000640219 ARHGAP5Q13017 1502 aa22.85■■□□□ 1.25
HLA-C-210ENST00000640219 ZNF335Q9H4Z2 1342 aaPredicted RBP22.82■■□□□ 1.24
HLA-C-210ENST00000640219 CAMSAP1Q5T5Y3 1602 aa22.82■■□□□ 1.24
HLA-C-210ENST00000640219 ABCA6Q8N139 1617 aa22.82■■□□□ 1.24
HLA-C-210ENST00000640219 AGLP35573 1532 aa22.82■■□□□ 1.24
HLA-C-210ENST00000640219 MLH3Q9UHC1 1453 aa22.81■■□□□ 1.24
HLA-C-210ENST00000640219 KIF14Q15058 1648 aa22.81■■□□□ 1.24
HLA-C-210ENST00000640219 CNTLNQ9NXG0 1405 aa22.8■■□□□ 1.24
HLA-C-210ENST00000640219 NCKAP5LQ9HCH0 1330 aa22.8■■□□□ 1.24
HLA-C-210ENST00000640219 EEA1Q15075 1411 aa22.77■■□□□ 1.24
HLA-C-210ENST00000640219 TROQ12816 1431 aaPredicted RBP22.75■■□□□ 1.23
HLA-C-210ENST00000640219 NPATQ14207 1427 aa22.75■■□□□ 1.23
HLA-C-210ENST00000640219 CHIC1Q5VXU3 224 aa22.75■■□□□ 1.23
HLA-C-210ENST00000640219 CLIP1P30622 1438 aa22.74■■□□□ 1.23
HLA-C-210ENST00000640219 FMN1Q68DA7 1419 aa22.74■■□□□ 1.23
HLA-C-210ENST00000640219 PKD2Q13563 968 aa22.72■■□□□ 1.23
HLA-C-210ENST00000640219 ZMYM3Q14202 1370 aa22.71■■□□□ 1.23
HLA-C-210ENST00000640219 CDC42BPBQ9Y5S2 1711 aa22.68■■□□□ 1.22
HLA-C-210ENST00000640219 SCAF1Q9H7N4 1312 aaKnown RBP22.68■■□□□ 1.22
HLA-C-210ENST00000640219 HSPA1LP34931 641 aa22.68■■□□□ 1.22
HLA-C-210ENST00000640219 MROH2AA6NES4 1674 aa22.68■■□□□ 1.22
HLA-C-210ENST00000640219 MED1Q15648 1581 aaPredicted RBP22.67■■□□□ 1.22
HLA-C-210ENST00000640219 ABCC1P33527 1531 aa22.67■■□□□ 1.22
HLA-C-210ENST00000640219 PLA2R1Q13018 1463 aa22.66■■□□□ 1.22
HLA-C-210ENST00000640219 KIDINS220Q9ULH0 1771 aa22.66■■□□□ 1.22
HLA-C-210ENST00000640219 PIP4K2BP78356 416 aa22.64■■□□□ 1.21
HLA-C-210ENST00000640219 ITSN2Q9NZM3 1697 aa22.64■■□□□ 1.21
HLA-C-210ENST00000640219 TCOF1Q13428 1488 aaKnown RBP22.63■■□□□ 1.21
HLA-C-210ENST00000640219 PPP6R1Q9UPN7 881 aa22.63■■□□□ 1.21
HLA-C-210ENST00000640219 PREX2Q70Z35 1606 aa22.62■■□□□ 1.21
HLA-C-210ENST00000640219 ZNF142P52746 1687 aaPredicted RBP22.61■■□□□ 1.21
HLA-C-210ENST00000640219 TOM1O60784 492 aa22.6■■□□□ 1.21
HLA-C-210ENST00000640219 EHMT2Q96KQ7 1210 aa22.6■■□□□ 1.21
HLA-C-210ENST00000640219 MYO3AQ8NEV4 1616 aa22.6■■□□□ 1.21
HLA-C-210ENST00000640219 ARHGAP35Q9NRY4 1499 aa22.6■■□□□ 1.21
HLA-C-210ENST00000640219 CEP170BQ9Y4F5 1589 aaPredicted RBP22.59■■□□□ 1.21
HLA-C-210ENST00000640219 SUPT6HQ7KZ85 1726 aaKnown RBP22.59■■□□□ 1.21
HLA-C-210ENST00000640219 UBTFP17480 764 aaKnown RBP22.58■■□□□ 1.21
HLA-C-210ENST00000640219 PHF23Q9BUL5 403 aaPredicted RBP22.58■■□□□ 1.21
HLA-C-210ENST00000640219 PTPRKQ15262 1439 aa22.57■■□□□ 1.2
HLA-C-210ENST00000640219 CLTCQ00610 1675 aaKnown RBP22.55■■□□□ 1.2
HLA-C-210ENST00000640219 SAMD9LQ8IVG5 1584 aa22.55■■□□□ 1.2
HLA-C-210ENST00000640219 LRRIQ1Q96JM4 1722 aa22.55■■□□□ 1.2
HLA-C-210ENST00000640219 SPAG9O60271 1321 aaKnown RBP22.55■■□□□ 1.2
HLA-C-210ENST00000640219 ZNF777Q9ULD5 760 aaPredicted RBP22.53■■□□□ 1.2
HLA-C-210ENST00000640219 GGT6Q6P531 493 aa22.51■■□□□ 1.19
HLA-C-210ENST00000640219 CPS1P31327 1500 aa22.5■■□□□ 1.19
HLA-C-210ENST00000640219 HNRNPMP52272 730 aaKnown RBP eCLIP22.49■■□□□ 1.19
HLA-C-210ENST00000640219 CDC42BPAQ5VT25 1732 aa22.48■■□□□ 1.19
HLA-C-210ENST00000640219 A2ML1A8K2U0 1454 aa22.47■■□□□ 1.19
HLA-C-210ENST00000640219 SHANK2Q9UPX8 1470 aa22.47■■□□□ 1.19
HLA-C-210ENST00000640219 A2MP01023 1474 aa22.47■■□□□ 1.19
HLA-C-210ENST00000640219 SYCP2Q9BX26 1530 aa22.47■■□□□ 1.19
HLA-C-210ENST00000640219 CCDC18Q5T9S5 1454 aa22.46■■□□□ 1.19
HLA-C-210ENST00000640219 ATP7AQ04656 1500 aa22.45■■□□□ 1.18
HLA-C-210ENST00000640219 PLXNC1O60486 1568 aa22.45■■□□□ 1.18
HLA-C-210ENST00000640219 DNMT1P26358 1616 aaKnown RBP22.45■■□□□ 1.18
HLA-C-210ENST00000640219 NEURL4Q96JN8 1562 aa22.4■■□□□ 1.18
HLA-C-210ENST00000640219 POLR1AO95602 1720 aaPredicted RBP22.4■■□□□ 1.18
HLA-C-210ENST00000640219 CASKIN1Q8WXD9 1431 aa22.4■■□□□ 1.18
HLA-C-210ENST00000640219 INO80Q9ULG1 1556 aaPredicted RBP22.39■■□□□ 1.18
HLA-C-210ENST00000640219 GPATCH8Q9UKJ3 1502 aaKnown RBP22.38■■□□□ 1.17
HLA-C-210ENST00000640219 SENP3Q9H4L4 574 aaPredicted RBP22.38■■□□□ 1.17
HLA-C-210ENST00000640219 KIAA1107Q9UPP5 1409 aa22.38■■□□□ 1.17
HLA-C-210ENST00000640219 ANKLE2Q86XL3 938 aa22.37■■□□□ 1.17
HLA-C-210ENST00000640219 ALKQ9UM73 1620 aa22.36■■□□□ 1.17
HLA-C-210ENST00000640219 TNRQ92752 1358 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms