RNA–Protein interactions for RNA: ENST00000640219.1

HLA-C-210, Transcript of major histocompatibility complex, class I, C, humanhuman

BASIC

Gene HLA-C, Length 976 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-210ENST00000640219 NISCHQ9Y2I1 1504 aa34.92■■■■□ 3.18
HLA-C-210ENST00000640219 ABCC9O60706 1549 aa32.41■■■□□ 2.78
HLA-C-210ENST00000640219 CCDC180Q9P1Z9 1646 aa31.62■■■□□ 2.65
HLA-C-210ENST00000640219 DNAJC5BQ9UF47 199 aa31.09■■■□□ 2.57
HLA-C-210ENST00000640219 RB1CC1Q8TDY2 1594 aa30.5■■■□□ 2.47
HLA-C-210ENST00000640219 NACADO15069 1562 aa30.11■■■□□ 2.41
HLA-C-210ENST00000640219 PABPN1Q86U42 306 aaKnown RBP eCLIP30.09■■■□□ 2.41
HLA-C-210ENST00000640219 DCAF8L2P0C7V8 631 aa29.9■■■□□ 2.38
HLA-C-210ENST00000640219 UNC13AQ9UPW8 1703 aa29.75■■■□□ 2.35
HLA-C-210ENST00000640219 BICRAQ9NZM4 1560 aa29.63■■■□□ 2.33
HLA-C-210ENST00000640219 MYO15BQ96JP2 1530 aa29.43■■■□□ 2.3
HLA-C-210ENST00000640219 CECR2Q9BXF3 1484 aa29.27■■■□□ 2.28
HLA-C-210ENST00000640219 CC2D2AQ9P2K1 1620 aa29.21■■■□□ 2.27
HLA-C-210ENST00000640219 SHROOM4Q9ULL8 1493 aa29.14■■■□□ 2.26
HLA-C-210ENST00000640219 DNAJC5Q9H3Z4 198 aa29.09■■■□□ 2.25
HLA-C-210ENST00000640219 EIF4G1Q04637 1599 aaKnown RBP28.96■■■□□ 2.23
HLA-C-210ENST00000640219 SCRIBQ14160 1630 aa28.8■■■□□ 2.2
HLA-C-210ENST00000640219 DCAF1Q9Y4B6 1507 aa28.79■■■□□ 2.2
HLA-C-210ENST00000640219 ZCCHC6Q5VYS8 1495 aaKnown RBP28.77■■■□□ 2.2
HLA-C-210ENST00000640219 CUX2O14529 1486 aa28.22■■■□□ 2.11
HLA-C-210ENST00000640219 ERCC6Q03468 1493 aa28.05■■■□□ 2.08
HLA-C-210ENST00000640219 NCAPD3P42695 1498 aa27.82■■■□□ 2.04
HLA-C-210ENST00000640219 ATAD2BQ9ULI0 1458 aa27.64■■■□□ 2.01
HLA-C-210ENST00000640219 NESP48681 1621 aa27.63■■■□□ 2.01
HLA-C-210ENST00000640219 TRIM41Q8WV44 630 aa27.54■■■□□ 2
HLA-C-210ENST00000640219 HMGXB3Q12766 1538 aa27.51■■■□□ 2
HLA-C-210ENST00000640219 SMARCA2P51531 1590 aa27.5■■□□□ 1.99
HLA-C-210ENST00000640219 THOC2Q8NI27 1593 aaKnown RBP27.45■■□□□ 1.99
HLA-C-210ENST00000640219 SMARCA4P51532 1647 aa27.38■■□□□ 1.97
HLA-C-210ENST00000640219 BAZ1BQ9UIG0 1483 aaKnown RBP27.32■■□□□ 1.96
HLA-C-210ENST00000640219 LAMC3Q9Y6N6 1575 aa27.29■■□□□ 1.96
HLA-C-210ENST00000640219 PDS5BQ9NTI5 1447 aa27.2■■□□□ 1.94
HLA-C-210ENST00000640219 KIF21AQ7Z4S6 1674 aa27.2■■□□□ 1.94
HLA-C-210ENST00000640219 BAZ1AQ9NRL2 1556 aaPredicted RBP27.15■■□□□ 1.94
HLA-C-210ENST00000640219 PEG3Q9GZU2 1588 aa27.11■■□□□ 1.93
HLA-C-210ENST00000640219 MRC2Q9UBG0 1479 aa26.99■■□□□ 1.91
HLA-C-210ENST00000640219 CADPSQ9ULU8 1353 aa26.96■■□□□ 1.91
HLA-C-210ENST00000640219 WDR62O43379 1518 aa26.92■■□□□ 1.9
HLA-C-210ENST00000640219 MROH2BQ7Z745 1585 aa26.91■■□□□ 1.9
HLA-C-210ENST00000640219 OSCARQ8IYS5 282 aa26.86■■□□□ 1.89
HLA-C-210ENST00000640219 CEP164Q9UPV0 1460 aa26.74■■□□□ 1.87
HLA-C-210ENST00000640219 FANCD2Q9BXW9 1451 aa26.64■■□□□ 1.86
HLA-C-210ENST00000640219 RIMBP3CA6NJZ7 1639 aa26.54■■□□□ 1.84
HLA-C-210ENST00000640219 RIMBP3BA6NNM3 1639 aa26.54■■□□□ 1.84
HLA-C-210ENST00000640219 RIMBP3Q9UFD9 1639 aa26.54■■□□□ 1.84
HLA-C-210ENST00000640219 WIZO95785 1651 aa26.54■■□□□ 1.84
HLA-C-210ENST00000640219 CFTRP13569 1480 aa26.48■■□□□ 1.83
HLA-C-210ENST00000640219 URB2Q14146 1524 aaKnown RBP26.46■■□□□ 1.83
HLA-C-210ENST00000640219 ARHGEF11O15085 1522 aa26.39■■□□□ 1.81
HLA-C-210ENST00000640219 CYB5RLQ6IPT4 315 aa26.3■■□□□ 1.8
HLA-C-210ENST00000640219 ZNF608Q9ULD9 1512 aaPredicted RBP26.26■■□□□ 1.79
HLA-C-210ENST00000640219 TRHP20396 242 aaPredicted RBP26.26■■□□□ 1.79
HLA-C-210ENST00000640219 IFT140Q96RY7 1462 aa26.23■■□□□ 1.79
HLA-C-210ENST00000640219 TOP2AP11388 1531 aaKnown RBP26.14■■□□□ 1.78
HLA-C-210ENST00000640219 RSF1Q96T23 1441 aaPredicted RBP26.09■■□□□ 1.77
HLA-C-210ENST00000640219 ARAP1Q96P48 1450 aa26.08■■□□□ 1.77
HLA-C-210ENST00000640219 PRDM2Q13029 1718 aa26.08■■□□□ 1.76
HLA-C-210ENST00000640219 AEBP2Q6ZN18 517 aaPredicted RBP26.06■■□□□ 1.76
HLA-C-210ENST00000640219 EIF4G3O43432 1585 aaKnown RBP26.05■■□□□ 1.76
HLA-C-210ENST00000640219 TOPBP1Q92547 1522 aa26.04■■□□□ 1.76
HLA-C-210ENST00000640219 CHD1O14646 1710 aa25.98■■□□□ 1.75
HLA-C-210ENST00000640219 FBLN2P98095 1184 aa25.97■■□□□ 1.75
HLA-C-210ENST00000640219 AQRO60306 1485 aaKnown RBP eCLIP25.95■■□□□ 1.746e-7■■■■■ 27.8
HLA-C-210ENST00000640219 ABCC8Q09428 1581 aa25.95■■□□□ 1.74
HLA-C-210ENST00000640219 CCDC88BA6NC98 1476 aa25.89■■□□□ 1.73
HLA-C-210ENST00000640219 DNMBPQ6XZF7 1577 aa25.87■■□□□ 1.73
HLA-C-210ENST00000640219 TARBP1Q13395 1621 aaKnown RBP25.85■■□□□ 1.73
HLA-C-210ENST00000640219 POLA1P09884 1462 aaPredicted RBP25.73■■□□□ 1.71
HLA-C-210ENST00000640219 TDRD9Q8NDG6 1382 aaKnown RBP25.69■■□□□ 1.7
HLA-C-210ENST00000640219 CLASP1Q7Z460 1538 aa25.68■■□□□ 1.7
HLA-C-210ENST00000640219 RAD54L2Q9Y4B4 1467 aa25.66■■□□□ 1.7
HLA-C-210ENST00000640219 CHMP7Q8WUX9 453 aaPredicted RBP25.65■■□□□ 1.7
HLA-C-210ENST00000640219 SNAPC4Q5SXM2 1469 aa25.65■■□□□ 1.7
HLA-C-210ENST00000640219 SOGA1O94964 1423 aa25.63■■□□□ 1.69
HLA-C-210ENST00000640219 SYNJ1O43426 1573 aa25.61■■□□□ 1.69
HLA-C-210ENST00000640219 MAGI1Q96QZ7 1491 aaPredicted RBP25.53■■□□□ 1.68
HLA-C-210ENST00000640219 WDR97A6NE52 1622 aa25.52■■□□□ 1.68
HLA-C-210ENST00000640219 GAPVD1Q14C86 1478 aa25.5■■□□□ 1.67
HLA-C-210ENST00000640219 GRIN2BQ13224 1484 aa25.48■■□□□ 1.67
HLA-C-210ENST00000640219 SYNJ2O15056 1496 aa25.47■■□□□ 1.67
HLA-C-210ENST00000640219 FGD5Q6ZNL6 1462 aa25.47■■□□□ 1.67
HLA-C-210ENST00000640219 CUX1P39880 1505 aa25.32■■□□□ 1.64
HLA-C-210ENST00000640219 PBRM1Q86U86 1689 aa25.27■■□□□ 1.64
HLA-C-210ENST00000640219 ERCC6L2Q5T890 1561 aa25.25■■□□□ 1.63
HLA-C-210ENST00000640219 ABCA5Q8WWZ7 1642 aa25.14■■□□□ 1.61
HLA-C-210ENST00000640219 GRIN2AQ12879 1464 aa25.14■■□□□ 1.61
HLA-C-210ENST00000640219 CEP170Q5SW79 1584 aa25.14■■□□□ 1.61
HLA-C-210ENST00000640219 ABCA10Q8WWZ4 1543 aa25.13■■□□□ 1.61
HLA-C-210ENST00000640219 KIF13AQ9H1H9 1805 aa25.09■■□□□ 1.61
HLA-C-210ENST00000640219 NUP160Q12769 1436 aa25.08■■□□□ 1.61
HLA-C-210ENST00000640219 SHROOM2Q13796 1616 aa25.02■■□□□ 1.6
HLA-C-210ENST00000640219 ADAMTS12P58397 1594 aa25.01■■□□□ 1.59
HLA-C-210ENST00000640219 FAM69CQ0P6D2 419 aa24.98■■□□□ 1.59
HLA-C-210ENST00000640219 ILDR1Q86SU0 546 aaPredicted RBP24.97■■□□□ 1.59
HLA-C-210ENST00000640219 FHAD1B1AJZ9 1412 aa24.95■■□□□ 1.58
HLA-C-210ENST00000640219 KDM4FA0A1W2PPD8 638 aa24.94■■□□□ 1.58
HLA-C-210ENST00000640219 PRG4Q92954 1404 aaPredicted RBP24.93■■□□□ 1.58
HLA-C-210ENST00000640219 ABCC10Q5T3U5 1492 aa24.92■■□□□ 1.58
HLA-C-210ENST00000640219 WRNQ14191 1432 aaPredicted RBP eCLIP24.91■■□□□ 1.58
HLA-C-210ENST00000640219 NPM1P06748 294 aaKnown RBP eCLIP24.89■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 126.8 ms