RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 GTPBP6O43824 516 aaPredicted RBP12.74□□□□□ -0.37
CD44-239ENST00000639002 C2orf72A6NCS6 295 aa12.73□□□□□ -0.37
CD44-239ENST00000639002 MARVELD3Q96A59 401 aa12.73□□□□□ -0.37
CD44-239ENST00000639002 DOK7Q18PE1 504 aa12.68□□□□□ -0.38
CD44-239ENST00000639002 HOXB1P14653 301 aaPredicted RBP12.65□□□□□ -0.38
CD44-239ENST00000639002 RYDENQ9NUL5 291 aaKnown RBP12.65□□□□□ -0.38
CD44-239ENST00000639002 POTEB3A0JP26 581 aa12.64□□□□□ -0.39
CD44-239ENST00000639002 POTEBQ6S5H4 581 aa12.64□□□□□ -0.39
CD44-239ENST00000639002 ZNF710Q8N1W2 664 aa12.64□□□□□ -0.39
CD44-239ENST00000639002 GPR153Q6NV75 609 aa12.63□□□□□ -0.39
CD44-239ENST00000639002 TMC2Q8TDI7 906 aa12.63□□□□□ -0.39
CD44-239ENST00000639002 PCDH10Q9P2E7 1040 aa12.63□□□□□ -0.39
CD44-239ENST00000639002 CDAN1Q8IWY9 1227 aa12.62□□□□□ -0.39
CD44-239ENST00000639002 EMP3P54852 163 aa12.61□□□□□ -0.39
CD44-239ENST00000639002 ZSWIM6Q9HCJ5 1215 aa12.59□□□□□ -0.39
CD44-239ENST00000639002 GPHNQ9NQX3 736 aaPredicted RBP12.59□□□□□ -0.39
CD44-239ENST00000639002 RIMBP2O15034 1052 aa12.58□□□□□ -0.4
CD44-239ENST00000639002 BBXQ8WY36 941 aaPredicted RBP12.58□□□□□ -0.4
CD44-239ENST00000639002 FAM205CA6NFA0 338 aa12.57□□□□□ -0.4
CD44-239ENST00000639002 ARSIQ5FYB1 569 aa12.57□□□□□ -0.4
CD44-239ENST00000639002 KHSRPQ92945 711 aaKnown RBP eCLIP12.57□□□□□ -0.4
CD44-239ENST00000639002 FOXK1P85037 733 aa12.56□□□□□ -0.4
CD44-239ENST00000639002 HS3ST6Q96QI5 342 aa12.56□□□□□ -0.4
CD44-239ENST00000639002 DSG2Q14126 1118 aa12.55□□□□□ -0.4
CD44-239ENST00000639002 CRISPLD2Q9H0B8 497 aa12.55□□□□□ -0.4
CD44-239ENST00000639002 SLC34A2O95436 690 aa12.54□□□□□ -0.4
CD44-239ENST00000639002 PLPP6Q8IY26 295 aa12.53□□□□□ -0.4
CD44-239ENST00000639002 NCKAP5LQ9HCH0 1330 aa12.53□□□□□ -0.4
CD44-239ENST00000639002 CADPS2Q86UW7 1296 aa12.5□□□□□ -0.41
CD44-239ENST00000639002 PCDHGA4Q9Y5G9 962 aa12.49□□□□□ -0.41
CD44-239ENST00000639002 ERBB3P21860 1342 aa12.47□□□□□ -0.41
CD44-239ENST00000639002 KRTAP3-3Q9BYR6 98 aa12.46□□□□□ -0.41
CD44-239ENST00000639002 KRTAP3-2Q9BYR7 98 aa12.46□□□□□ -0.41
CD44-239ENST00000639002 PLSCR2Q9NRY7 297 aa12.46□□□□□ -0.41
CD44-239ENST00000639002 PDE4AP27815 886 aa12.45□□□□□ -0.42
CD44-239ENST00000639002 VARS2Q5ST30 1063 aaKnown RBP12.45□□□□□ -0.42
CD44-239ENST00000639002 PTCD2Q8WV60 388 aaKnown RBP12.45□□□□□ -0.42
CD44-239ENST00000639002 NUDT7P0C024 238 aa12.44□□□□□ -0.42
CD44-239ENST00000639002 KDM4FA0A1W2PPD8 638 aa12.43□□□□□ -0.42
CD44-239ENST00000639002 PPP1R15BQ5SWA1 713 aa12.42□□□□□ -0.42
CD44-239ENST00000639002 ZNF316A6NFI3 1004 aaPredicted RBP12.41□□□□□ -0.42
CD44-239ENST00000639002 SPRYD3Q8NCJ5 442 aa12.41□□□□□ -0.42
CD44-239ENST00000639002 LARP6Q9BRS8 491 aaKnown RBP12.41□□□□□ -0.42
CD44-239ENST00000639002 MFSD10Q14728 455 aa12.4□□□□□ -0.42
CD44-239ENST00000639002 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.39□□□□□ -0.43
CD44-239ENST00000639002 LHX6Q9UPM6 363 aa12.38□□□□□ -0.43
CD44-239ENST00000639002 ZNF687Q8N1G0 1237 aa12.37□□□□□ -0.43
CD44-239ENST00000639002 OXER1Q8TDS5 423 aa12.37□□□□□ -0.43
CD44-239ENST00000639002 PAXIP1Q6ZW49 1069 aaPredicted RBP12.36□□□□□ -0.43
CD44-239ENST00000639002 DDX27Q96GQ7 796 aaKnown RBP12.35□□□□□ -0.43
CD44-239ENST00000639002 CFAP44Q96MT7 982 aa12.34□□□□□ -0.43
CD44-239ENST00000639002 SPNS2Q8IVW8 549 aa12.33□□□□□ -0.44
CD44-239ENST00000639002 UPF1Q92900 1129 aaKnown RBP eCLIP12.33□□□□□ -0.44
CD44-239ENST00000639002 TBC1D12O60347 775 aa12.29□□□□□ -0.44
CD44-239ENST00000639002 POTEEQ6S8J3 1075 aa12.29□□□□□ -0.44
CD44-239ENST00000639002 EMILIN3Q9NT22 766 aa12.29□□□□□ -0.44
CD44-239ENST00000639002 MMRN1Q13201 1228 aa12.23□□□□□ -0.45
CD44-239ENST00000639002 CAMK2BQ13554 666 aa12.23□□□□□ -0.45
CD44-239ENST00000639002 ANO8Q9HCE9 1232 aaPredicted RBP12.22□□□□□ -0.45
CD44-239ENST00000639002 AXIN2Q9Y2T1 843 aa12.21□□□□□ -0.45
CD44-239ENST00000639002 EVI5O60447 810 aa12.19□□□□□ -0.46
CD44-239ENST00000639002 PSDA5PKW4 1024 aaPredicted RBP12.18□□□□□ -0.46
CD44-239ENST00000639002 MAP3K9P80192 1104 aa12.18□□□□□ -0.46
CD44-239ENST00000639002 TSHZ2Q9NRE2 1034 aa12.16□□□□□ -0.46
CD44-239ENST00000639002 PBX2P40425 430 aa12.15□□□□□ -0.46
CD44-239ENST00000639002 LSM11P83369 360 aaKnown RBP eCLIP12.15□□□□□ -0.46
CD44-239ENST00000639002 PPP4R3BQ5MIZ7 849 aa12.14□□□□□ -0.47
CD44-239ENST00000639002 FOSBP53539 338 aa12.13□□□□□ -0.47
CD44-239ENST00000639002 ANKRD13DQ6ZTN6 518 aa12.13□□□□□ -0.47
CD44-239ENST00000639002 ARHGAP33O14559 1287 aa12.12□□□□□ -0.47
CD44-239ENST00000639002 PSEN2P49810 448 aa12.12□□□□□ -0.47
CD44-239ENST00000639002 ZNF454Q8N9F8 522 aa12.12□□□□□ -0.47
CD44-239ENST00000639002 DPYSL4O14531 572 aa12.11□□□□□ -0.47
CD44-239ENST00000639002 DMRTA1Q5VZB9 504 aa12.1□□□□□ -0.47
CD44-239ENST00000639002 JPH4Q96JJ6 628 aa12.08□□□□□ -0.48
CD44-239ENST00000639002 E2F4Q16254 413 aa12.06□□□□□ -0.48
CD44-239ENST00000639002 PCDHGA10Q9Y5H3 936 aa12.06□□□□□ -0.48
CD44-239ENST00000639002 BCL2L12Q9HB09 334 aa12.05□□□□□ -0.48
CD44-239ENST00000639002 KCNK17Q96T54 332 aa12.04□□□□□ -0.48
CD44-239ENST00000639002 ADAM33Q9BZ11 813 aa12.04□□□□□ -0.48
CD44-239ENST00000639002 ZDHHC16Q969W1 377 aa12.03□□□□□ -0.48
CD44-239ENST00000639002 WDR70Q9NW82 654 aa12.03□□□□□ -0.48
CD44-239ENST00000639002 ADGRD1Q6QNK2 874 aa12.02□□□□□ -0.49
CD44-239ENST00000639002 MYT1LQ9UL68 1186 aa12.02□□□□□ -0.49
CD44-239ENST00000639002 ARIH1Q9Y4X5 557 aaPredicted RBP12.01□□□□□ -0.49
CD44-239ENST00000639002 PTGER2P43116 358 aa12□□□□□ -0.49
CD44-239ENST00000639002 PLCB2Q00722 1185 aa12□□□□□ -0.49
CD44-239ENST00000639002 TK2O00142 265 aa11.99□□□□□ -0.49
CD44-239ENST00000639002 HRO43593 1189 aa11.99□□□□□ -0.49
CD44-239ENST00000639002 PHF14O94880 888 aa11.99□□□□□ -0.49
CD44-239ENST00000639002 PDIA6Q15084 440 aa11.99□□□□□ -0.49
CD44-239ENST00000639002 RNF166Q96A37 237 aaPredicted RBP11.98□□□□□ -0.49
CD44-239ENST00000639002 PTPREP23469 700 aa11.96□□□□□ -0.49
CD44-239ENST00000639002 DDX12PQ92771 950 aa11.96□□□□□ -0.49
CD44-239ENST00000639002 TYW1BQ6NUM6 668 aa11.95□□□□□ -0.5
CD44-239ENST00000639002 VPS9D1Q9Y2B5 631 aa11.95□□□□□ -0.5
CD44-239ENST00000639002 SPDYE16A6NNV3 312 aaPredicted RBP11.94□□□□□ -0.5
CD44-239ENST00000639002 ZBED2Q9BTP6 218 aa11.94□□□□□ -0.5
CD44-239ENST00000639002 SLC4A5Q9BY07 1137 aa11.94□□□□□ -0.5
CD44-239ENST00000639002 COL9A1P20849 921 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms