RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 PHF8Q9UPP1 1060 aa4.29□□□□□ -1.72
SMARCB1-209ENST00000635578 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.28□□□□□ -1.72
SMARCB1-209ENST00000635578 RIOK3O14730 519 aaKnown RBP4.28□□□□□ -1.72
SMARCB1-209ENST00000635578 TRIM41Q8WV44 630 aa4.28□□□□□ -1.72
SMARCB1-209ENST00000635578 ZFP91Q96JP5 570 aaPredicted RBP4.28□□□□□ -1.72
SMARCB1-209ENST00000635578 SOX12O15370 315 aa4.27□□□□□ -1.73
SMARCB1-209ENST00000635578 RNF25Q96BH1 459 aaPredicted RBP4.27□□□□□ -1.73
SMARCB1-209ENST00000635578 ZNF316A6NFI3 1004 aaPredicted RBP4.25□□□□□ -1.73
SMARCB1-209ENST00000635578 PTGER2P43116 358 aa4.25□□□□□ -1.73
SMARCB1-209ENST00000635578 LSM11P83369 360 aaKnown RBP eCLIP4.25□□□□□ -1.73
SMARCB1-209ENST00000635578 VGFO15240 615 aaPredicted RBP4.24□□□□□ -1.73
SMARCB1-209ENST00000635578 NUDT7P0C024 238 aa4.23□□□□□ -1.73
SMARCB1-209ENST00000635578 NLRP6P59044 892 aa4.23□□□□□ -1.73
SMARCB1-209ENST00000635578 AXIN2Q9Y2T1 843 aa4.23□□□□□ -1.73
SMARCB1-209ENST00000635578 BCL11BQ9C0K0 894 aaPredicted RBP4.22□□□□□ -1.73
SMARCB1-209ENST00000635578 C2orf72A6NCS6 295 aa4.21□□□□□ -1.74
SMARCB1-209ENST00000635578 PLA2G2EQ9NZK7 142 aa4.21□□□□□ -1.74
SMARCB1-209ENST00000635578 STK24Q9Y6E0 443 aa4.21□□□□□ -1.74
SMARCB1-209ENST00000635578 FBXO22Q8NEZ5 403 aa4.2□□□□□ -1.74
SMARCB1-209ENST00000635578 LHX6Q9UPM6 363 aa4.2□□□□□ -1.74
SMARCB1-209ENST00000635578 PBX2P40425 430 aa4.19□□□□□ -1.74
SMARCB1-209ENST00000635578 POTEEQ6S8J3 1075 aa4.19□□□□□ -1.74
SMARCB1-209ENST00000635578 MFRPQ9BY79 579 aa4.19□□□□□ -1.74
SMARCB1-209ENST00000635578 PCDHGA4Q9Y5G9 962 aa4.19□□□□□ -1.74
SMARCB1-209ENST00000635578 STK25O00506 426 aa4.18□□□□□ -1.74
SMARCB1-209ENST00000635578 KIF3CO14782 793 aa4.17□□□□□ -1.74
SMARCB1-209ENST00000635578 TMC2Q8TDI7 906 aa4.17□□□□□ -1.74
SMARCB1-209ENST00000635578 HCSTQ9UBK5 93 aa4.17□□□□□ -1.74
SMARCB1-209ENST00000635578 ADGRD1Q6QNK2 874 aa4.16□□□□□ -1.74
SMARCB1-209ENST00000635578 TAOK2Q9UL54 1235 aa4.16□□□□□ -1.74
SMARCB1-209ENST00000635578 ARHGAP33O14559 1287 aa4.14□□□□□ -1.75
SMARCB1-209ENST00000635578 PSEN2P49810 448 aa4.14□□□□□ -1.75
SMARCB1-209ENST00000635578 DMRTA1Q5VZB9 504 aa4.14□□□□□ -1.75
SMARCB1-209ENST00000635578 KCTD12Q96CX2 325 aaKnown RBP4.14□□□□□ -1.75
SMARCB1-209ENST00000635578 ECM2O94769 699 aaPredicted RBP4.13□□□□□ -1.75
SMARCB1-209ENST00000635578 SLC34A2O95436 690 aa4.13□□□□□ -1.75
SMARCB1-209ENST00000635578 PPP1R37O75864 691 aa4.12□□□□□ -1.75
SMARCB1-209ENST00000635578 STAC3Q96MF2 364 aa4.12□□□□□ -1.75
SMARCB1-209ENST00000635578 PSDA5PKW4 1024 aaPredicted RBP4.11□□□□□ -1.75
SMARCB1-209ENST00000635578 KCNK17Q96T54 332 aa4.11□□□□□ -1.75
SMARCB1-209ENST00000635578 TK2O00142 265 aa4.1□□□□□ -1.75
SMARCB1-209ENST00000635578 RGL2O15211 777 aa4.1□□□□□ -1.75
SMARCB1-209ENST00000635578 PTPN5P54829 565 aa4.1□□□□□ -1.75
SMARCB1-209ENST00000635578 PPP4R3BQ5MIZ7 849 aa4.1□□□□□ -1.75
SMARCB1-209ENST00000635578 HRO43593 1189 aa4.09□□□□□ -1.75
SMARCB1-209ENST00000635578 PLPP6Q8IY26 295 aa4.09□□□□□ -1.75
SMARCB1-209ENST00000635578 KCNH8Q96L42 1107 aa4.09□□□□□ -1.75
SMARCB1-209ENST00000635578 KDM4FA0A1W2PPD8 638 aa4.08□□□□□ -1.76
SMARCB1-209ENST00000635578 PTCD2Q8WV60 388 aaKnown RBP4.08□□□□□ -1.76
SMARCB1-209ENST00000635578 DSG2Q14126 1118 aa4.07□□□□□ -1.76
SMARCB1-209ENST00000635578 TBC1D12O60347 775 aa4.06□□□□□ -1.76
SMARCB1-209ENST00000635578 UPF1Q92900 1129 aaKnown RBP eCLIP4.06□□□□□ -1.76
SMARCB1-209ENST00000635578 VPS9D1Q9Y2B5 631 aa4.06□□□□□ -1.76
SMARCB1-209ENST00000635578 FOXK1P85037 733 aa4.05□□□□□ -1.76
SMARCB1-209ENST00000635578 PKD2Q13563 968 aa4.05□□□□□ -1.76
SMARCB1-209ENST00000635578 ZNF454Q8N9F8 522 aa4.05□□□□□ -1.76
SMARCB1-209ENST00000635578 GPHNQ9NQX3 736 aaPredicted RBP4.05□□□□□ -1.76
SMARCB1-209ENST00000635578 GOLGA8CPA6NN73 597 aa4.04□□□□□ -1.76
SMARCB1-209ENST00000635578 IRX2Q9BZI1 471 aaPredicted RBP4.04□□□□□ -1.76
SMARCB1-209ENST00000635578 THSD4Q6ZMP0 1018 aa4.03□□□□□ -1.76
SMARCB1-209ENST00000635578 WNT2BQ93097 391 aa4.02□□□□□ -1.77
SMARCB1-209ENST00000635578 A0A0G2JS52 829 aa4.01□□□□□ -1.77
SMARCB1-209ENST00000635578 PTPREP23469 700 aa4.01□□□□□ -1.77
SMARCB1-209ENST00000635578 MRPL50Q8N5N7 158 aaKnown RBP4.01□□□□□ -1.77
SMARCB1-209ENST00000635578 OXER1Q8TDS5 423 aa4.01□□□□□ -1.77
SMARCB1-209ENST00000635578 BCL2L12Q9HB09 334 aa4.01□□□□□ -1.77
SMARCB1-209ENST00000635578 RGS20O76081 388 aa3.99□□□□□ -1.77
SMARCB1-209ENST00000635578 CHGAP10645 457 aaKnown RBP3.99□□□□□ -1.77
SMARCB1-209ENST00000635578 FOSBP53539 338 aa3.99□□□□□ -1.77
SMARCB1-209ENST00000635578 HS6ST3Q8IZP7 471 aa3.99□□□□□ -1.77
SMARCB1-209ENST00000635578 ZBED2Q9BTP6 218 aa3.99□□□□□ -1.77
SMARCB1-209ENST00000635578 SLC4A5Q9BY07 1137 aa3.99□□□□□ -1.77
SMARCB1-209ENST00000635578 BHMG1C9JSJ3 638 aaPredicted RBP3.98□□□□□ -1.77
SMARCB1-209ENST00000635578 PPP1R15BQ5SWA1 713 aa3.98□□□□□ -1.77
SMARCB1-209ENST00000635578 IFFO2Q5TF58 517 aa3.98□□□□□ -1.77
SMARCB1-209ENST00000635578 ADAM33Q9BZ11 813 aa3.98□□□□□ -1.77
SMARCB1-209ENST00000635578 NBPF3Q9H094 633 aa3.98□□□□□ -1.77
SMARCB1-209ENST00000635578 EVI5O60447 810 aa3.97□□□□□ -1.77
SMARCB1-209ENST00000635578 Q6ZNB5 142 aa3.97□□□□□ -1.77
SMARCB1-209ENST00000635578 JPH4Q96JJ6 628 aa3.97□□□□□ -1.77
SMARCB1-209ENST00000635578 BCAMP50895 628 aa3.96□□□□□ -1.78
SMARCB1-209ENST00000635578 NKX1-1Q15270 411 aaPredicted RBP3.96□□□□□ -1.78
SMARCB1-209ENST00000635578 PROX2Q3B8N5 592 aa3.96□□□□□ -1.78
SMARCB1-209ENST00000635578 ANKK1Q8NFD2 765 aa3.96□□□□□ -1.78
SMARCB1-209ENST00000635578 ZDHHC16Q969W1 377 aa3.96□□□□□ -1.78
SMARCB1-209ENST00000635578 CRISPLD2Q9H0B8 497 aa3.96□□□□□ -1.78
SMARCB1-209ENST00000635578 NCKAP5LQ9HCH0 1330 aa3.95□□□□□ -1.78
SMARCB1-209ENST00000635578 PPP1R3GB7ZBB8 358 aa3.93□□□□□ -1.78
SMARCB1-209ENST00000635578 ITGBL1O95965 494 aaPredicted RBP3.93□□□□□ -1.78
SMARCB1-209ENST00000635578 COL9A1P20849 921 aa3.93□□□□□ -1.78
SMARCB1-209ENST00000635578 MAP3K9P80192 1104 aa3.93□□□□□ -1.78
SMARCB1-209ENST00000635578 LARP6Q9BRS8 491 aaKnown RBP3.93□□□□□ -1.78
SMARCB1-209ENST00000635578 ANO8Q9HCE9 1232 aaPredicted RBP3.93□□□□□ -1.78
SMARCB1-209ENST00000635578 RABGEF1Q9UJ41 708 aa3.93□□□□□ -1.78
SMARCB1-209ENST00000635578 PDE4AP27815 886 aa3.92□□□□□ -1.78
SMARCB1-209ENST00000635578 WBP1LQ9NX94 342 aa3.92□□□□□ -1.78
SMARCB1-209ENST00000635578 KIAA1468Q9P260 1216 aa3.92□□□□□ -1.78
SMARCB1-209ENST00000635578 SEPT9Q9UHD8 586 aaPredicted RBP3.92□□□□□ -1.78
SMARCB1-209ENST00000635578 PCDHGA10Q9Y5H3 936 aa3.92□□□□□ -1.78
SMARCB1-209ENST00000635578 SOWAHBA6NEL2 793 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms