RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 RBM25P49756 843 aaKnown RBP6.43□□□□□ -1.38
VPS13D-214ENST00000620676 FTSJ3Q8IY81 847 aaKnown RBP6.43□□□□□ -1.38
VPS13D-214ENST00000620676 FOXD1Q16676 465 aa6.43□□□□□ -1.38
VPS13D-214ENST00000620676 TULP1O00294 542 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-214ENST00000620676 ZNF592Q92610 1267 aa6.42□□□□□ -1.38
VPS13D-214ENST00000620676 VGLL3A8MV65 326 aa6.42□□□□□ -1.38
VPS13D-214ENST00000620676 HSPA5P11021 654 aaKnown RBP6.42□□□□□ -1.38
VPS13D-214ENST00000620676 CRBNQ96SW2 442 aa6.42□□□□□ -1.38
VPS13D-214ENST00000620676 RRP9O43818 475 aaKnown RBP6.41□□□□□ -1.38
VPS13D-214ENST00000620676 CBX1P83916 185 aa6.4□□□□□ -1.38
VPS13D-214ENST00000620676 GBP4Q96PP9 640 aa6.4□□□□□ -1.38
VPS13D-214ENST00000620676 HAP1P54257 671 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-214ENST00000620676 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.4□□□□□ -1.39
VPS13D-214ENST00000620676 ERICH4A6NGS2 130 aa6.4□□□□□ -1.39
VPS13D-214ENST00000620676 SKIDA1Q1XH10 827 aa6.4□□□□□ -1.39
VPS13D-214ENST00000620676 CEP162Q5TB80 1403 aa6.39□□□□□ -1.39
VPS13D-214ENST00000620676 DHX37Q8IY37 1157 aaKnown RBP6.39□□□□□ -1.39
VPS13D-214ENST00000620676 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.39□□□□□ -1.392e-6■■■□□ 15.9
VPS13D-214ENST00000620676 CHMP4BQ9H444 224 aaKnown RBP6.39□□□□□ -1.39
VPS13D-214ENST00000620676 KIAA1211Q6ZU35 1233 aa6.39□□□□□ -1.39
VPS13D-214ENST00000620676 POGKQ9P215 609 aa6.39□□□□□ -1.39
VPS13D-214ENST00000620676 ZFP91Q96JP5 570 aaPredicted RBP6.38□□□□□ -1.39
VPS13D-214ENST00000620676 NPHP1O15259 732 aa6.38□□□□□ -1.39
VPS13D-214ENST00000620676 AEBP2Q6ZN18 517 aaPredicted RBP6.38□□□□□ -1.39
VPS13D-214ENST00000620676 RGL3Q3MIN7 710 aa6.37□□□□□ -1.39
VPS13D-214ENST00000620676 NUDCQ9Y266 331 aa6.37□□□□□ -1.39
VPS13D-214ENST00000620676 CCAR2Q8N163 923 aaKnown RBP6.37□□□□□ -1.39
VPS13D-214ENST00000620676 UQCRHLA0A096LP55 91 aa6.37□□□□□ -1.39
VPS13D-214ENST00000620676 SPDYE4A6NLX3 237 aa6.37□□□□□ -1.39
VPS13D-214ENST00000620676 UQCRHP07919 91 aa6.37□□□□□ -1.39
VPS13D-214ENST00000620676 TPM2P07951 284 aa6.37□□□□□ -1.39
VPS13D-214ENST00000620676 RNF214Q8ND24 703 aa6.36□□□□□ -1.39
VPS13D-214ENST00000620676 PATL2C9JE40 543 aaKnown RBP6.36□□□□□ -1.39
VPS13D-214ENST00000620676 CALD1Q05682 793 aaKnown RBP6.36□□□□□ -1.39
VPS13D-214ENST00000620676 CCDC146Q8IYE0 955 aa6.36□□□□□ -1.39
VPS13D-214ENST00000620676 NAP1L2Q9ULW6 460 aaPredicted RBP6.36□□□□□ -1.39
VPS13D-214ENST00000620676 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.36□□□□□ -1.39
VPS13D-214ENST00000620676 FBXW7Q969H0 707 aa6.36□□□□□ -1.39
VPS13D-214ENST00000620676 KANK4Q5T7N3 995 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-214ENST00000620676 CGNQ9P2M7 1197 aaKnown RBP6.35□□□□□ -1.39
VPS13D-214ENST00000620676 NASPP49321 788 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-214ENST00000620676 CLUAP1Q96AJ1 413 aa6.35□□□□□ -1.39
VPS13D-214ENST00000620676 ZRSR1Q15695 479 aaKnown RBP6.35□□□□□ -1.39
VPS13D-214ENST00000620676 TNNT1P13805 278 aa6.35□□□□□ -1.39
VPS13D-214ENST00000620676 DDX49Q9Y6V7 483 aaKnown RBP6.35□□□□□ -1.39
VPS13D-214ENST00000620676 IGSF3O75054 1194 aa6.35□□□□□ -1.39
VPS13D-214ENST00000620676 TAF7LQ5H9L4 462 aa6.35□□□□□ -1.39
VPS13D-214ENST00000620676 FAM161AQ3B820 660 aa6.35□□□□□ -1.39
VPS13D-214ENST00000620676 IBSPP21815 317 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-214ENST00000620676 TRAK2O60296 914 aa6.34□□□□□ -1.39
VPS13D-214ENST00000620676 CASC1Q6TDU7 716 aa6.34□□□□□ -1.39
VPS13D-214ENST00000620676 CHMP3Q9Y3E7 222 aa6.34□□□□□ -1.39
VPS13D-214ENST00000620676 PABPN1Q86U42 306 aaKnown RBP eCLIP6.34□□□□□ -1.39
VPS13D-214ENST00000620676 FAM177BA6PVY3 158 aa6.34□□□□□ -1.39
VPS13D-214ENST00000620676 ZBTB9Q96C00 473 aa6.34□□□□□ -1.39
VPS13D-214ENST00000620676 CLIP1P30622 1438 aa6.34□□□□□ -1.4
VPS13D-214ENST00000620676 GPATCH11Q8N954 259 aa6.33□□□□□ -1.4
VPS13D-214ENST00000620676 PDIA4P13667 645 aaKnown RBP6.33□□□□□ -1.4
VPS13D-214ENST00000620676 MCTP1Q6DN14 999 aa6.33□□□□□ -1.4
VPS13D-214ENST00000620676 GOLGA6L4A6NEF3 574 aa6.33□□□□□ -1.4
VPS13D-214ENST00000620676 CHGAP10645 457 aaKnown RBP6.32□□□□□ -1.4
VPS13D-214ENST00000620676 CERS3Q8IU89 383 aa6.32□□□□□ -1.4
VPS13D-214ENST00000620676 DDX11L8A8MPP1 907 aa6.32□□□□□ -1.4
VPS13D-214ENST00000620676 KCNJ4P48050 445 aa6.32□□□□□ -1.4
VPS13D-214ENST00000620676 RRP1P56182 461 aaKnown RBP6.32□□□□□ -1.4
VPS13D-214ENST00000620676 ITPRIPQ8IWB1 547 aa6.32□□□□□ -1.4
VPS13D-214ENST00000620676 XPCQ01831 940 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-214ENST00000620676 RRP7AQ9Y3A4 280 aaKnown RBP6.31□□□□□ -1.4
VPS13D-214ENST00000620676 KNSTRNQ9Y448 316 aa6.31□□□□□ -1.4
VPS13D-214ENST00000620676 GOLGA6L6A8MZA4 724 aa6.3□□□□□ -1.4
VPS13D-214ENST00000620676 RRAGDQ9NQL2 400 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-214ENST00000620676 CCDC184Q52MB2 194 aa6.3□□□□□ -1.4
VPS13D-214ENST00000620676 RWDD1Q9H446 243 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-214ENST00000620676 U2SURPO15042 1029 aaKnown RBP6.3□□□□□ -1.4
VPS13D-214ENST00000620676 CARD11Q9BXL7 1154 aa6.3□□□□□ -1.4
VPS13D-214ENST00000620676 BCL2L13Q9BXK5 485 aa6.29□□□□□ -1.4
VPS13D-214ENST00000620676 SPC24Q8NBT2 197 aa6.29□□□□□ -1.4
VPS13D-214ENST00000620676 GORABQ5T7V8 394 aa6.29□□□□□ -1.4
VPS13D-214ENST00000620676 ESPNB1AK53 854 aa6.29□□□□□ -1.4
VPS13D-214ENST00000620676 AKNAQ7Z591 1439 aa6.29□□□□□ -1.4
VPS13D-214ENST00000620676 MRE11P49959 708 aa6.29□□□□□ -1.4
VPS13D-214ENST00000620676 IPO4Q8TEX9 1081 aaKnown RBP6.29□□□□□ -1.4
VPS13D-214ENST00000620676 CAVIN1Q6NZI2 390 aaKnown RBP6.29□□□□□ -1.4
VPS13D-214ENST00000620676 DCAF11Q8TEB1 546 aa6.28□□□□□ -1.4
VPS13D-214ENST00000620676 CREBRFQ8IUR6 639 aa6.28□□□□□ -1.4
VPS13D-214ENST00000620676 GNL2Q13823 731 aaKnown RBP6.28□□□□□ -1.4
VPS13D-214ENST00000620676 COG6Q9Y2V7 657 aa6.28□□□□□ -1.4
VPS13D-214ENST00000620676 PPP4R3BQ5MIZ7 849 aa6.28□□□□□ -1.4
VPS13D-214ENST00000620676 MS4A1P11836 297 aa6.28□□□□□ -1.4
VPS13D-214ENST00000620676 PANK2Q9BZ23 570 aa6.28□□□□□ -1.4
VPS13D-214ENST00000620676 PDCL3Q9H2J4 239 aa6.28□□□□□ -1.4
VPS13D-214ENST00000620676 GOLGA6L1Q8N7Z2 621 aa6.28□□□□□ -1.4
VPS13D-214ENST00000620676 GRPEL1Q9HAV7 217 aa6.28□□□□□ -1.4
VPS13D-214ENST00000620676 BACH2Q9BYV9 841 aa6.27□□□□□ -1.41
VPS13D-214ENST00000620676 CSPP1Q1MSJ5 1256 aa6.27□□□□□ -1.41
VPS13D-214ENST00000620676 PANK1Q8TE04 598 aa6.27□□□□□ -1.41
VPS13D-214ENST00000620676 IFT57Q9NWB7 429 aa6.27□□□□□ -1.41
VPS13D-214ENST00000620676 PPP1R15AO75807 674 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-214ENST00000620676 CDCA7LQ96GN5 454 aa6.26□□□□□ -1.41
VPS13D-214ENST00000620676 MEX3CQ5U5Q3 659 aaKnown RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms