RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 KIF14Q15058 1648 aa25.77■■□□□ 1.72
BRCA1-228ENST00000618469 SIGLEC1Q9BZZ2 1709 aa25.75■■□□□ 1.71
BRCA1-228ENST00000618469 DENND4BO75064 1496 aaPredicted RBP25.75■■□□□ 1.71
BRCA1-228ENST00000618469 MLECQ14165 292 aa25.75■■□□□ 1.71
BRCA1-228ENST00000618469 TROQ12816 1431 aaPredicted RBP25.73■■□□□ 1.71
BRCA1-228ENST00000618469 AKNAQ7Z591 1439 aa25.73■■□□□ 1.71
BRCA1-228ENST00000618469 CDK11AQ9UQ88 783 aaPredicted RBP25.73■■□□□ 1.71
BRCA1-228ENST00000618469 CFAP74Q9C0B2 1584 aa25.73■■□□□ 1.71
BRCA1-228ENST00000618469 LOC105371045A0A1W2PR82 267 aa25.71■■□□□ 1.71
BRCA1-228ENST00000618469 MYO5CQ9NQX4 1742 aa25.71■■□□□ 1.71
BRCA1-228ENST00000618469 YEATS2Q9ULM3 1422 aa25.7■■□□□ 1.7
BRCA1-228ENST00000618469 FANCAO15360 1455 aa25.69■■□□□ 1.7
BRCA1-228ENST00000618469 CERKQ8TCT0 537 aa25.64■■□□□ 1.7
BRCA1-228ENST00000618469 ZFYVE16Q7Z3T8 1539 aa25.63■■□□□ 1.69
BRCA1-228ENST00000618469 POGZQ7Z3K3 1410 aa25.62■■□□□ 1.69
BRCA1-228ENST00000618469 FER1L4A9Z1Z3 1794 aa25.61■■□□□ 1.69
BRCA1-228ENST00000618469 PLCH2O75038 1416 aa25.6■■□□□ 1.69
BRCA1-228ENST00000618469 ZMYM4Q5VZL5 1548 aa25.58■■□□□ 1.69
BRCA1-228ENST00000618469 PREX2Q70Z35 1606 aa25.57■■□□□ 1.68
BRCA1-228ENST00000618469 ARHGAP5Q13017 1502 aa25.57■■□□□ 1.68
BRCA1-228ENST00000618469 CEBPAP49715 358 aaPredicted RBP25.56■■□□□ 1.68
BRCA1-228ENST00000618469 SCAPERQ9BY12 1400 aa25.54■■□□□ 1.68
BRCA1-228ENST00000618469 CDC42BPBQ9Y5S2 1711 aa25.54■■□□□ 1.68
BRCA1-228ENST00000618469 VPS8Q8N3P4 1428 aa25.53■■□□□ 1.68
BRCA1-228ENST00000618469 CDC42BPAQ5VT25 1732 aa25.52■■□□□ 1.68
BRCA1-228ENST00000618469 EHBP1L1Q8N3D4 1523 aa25.51■■□□□ 1.67
BRCA1-228ENST00000618469 MTUS2Q5JR59 1369 aa25.49■■□□□ 1.67
BRCA1-228ENST00000618469 MAGI2Q86UL8 1455 aa25.47■■□□□ 1.67
BRCA1-228ENST00000618469 ILDR2Q71H61 639 aa25.47■■□□□ 1.67
BRCA1-228ENST00000618469 EFCAB2Q5VUJ9 269 aa25.46■■□□□ 1.67
BRCA1-228ENST00000618469 TIAM1Q13009 1591 aa25.45■■□□□ 1.66
BRCA1-228ENST00000618469 PREX1Q8TCU6 1659 aa25.45■■□□□ 1.66
BRCA1-228ENST00000618469 DISP3Q9P2K9 1392 aa25.44■■□□□ 1.66
BRCA1-228ENST00000618469 ARHGEF12Q9NZN5 1544 aa25.44■■□□□ 1.66
BRCA1-228ENST00000618469 ATP10AO60312 1499 aa25.44■■□□□ 1.66
BRCA1-228ENST00000618469 ABCC1P33527 1531 aa25.42■■□□□ 1.66
BRCA1-228ENST00000618469 STRCQ7RTU9 1775 aa25.42■■□□□ 1.66
BRCA1-228ENST00000618469 C9orf84Q5VXU9 1444 aa25.41■■□□□ 1.66
BRCA1-228ENST00000618469 MYT1LQ9UL68 1186 aa25.41■■□□□ 1.66
BRCA1-228ENST00000618469 ITSN2Q9NZM3 1697 aa25.4■■□□□ 1.66
BRCA1-228ENST00000618469 GPATCH8Q9UKJ3 1502 aaKnown RBP25.38■■□□□ 1.65
BRCA1-228ENST00000618469 SAMD9LQ8IVG5 1584 aa25.37■■□□□ 1.65
BRCA1-228ENST00000618469 ZNF518AQ6AHZ1 1483 aa25.37■■□□□ 1.65
BRCA1-228ENST00000618469 AFAP1Q8N556 730 aa25.37■■□□□ 1.65
BRCA1-228ENST00000618469 SUPT6HQ7KZ85 1726 aaKnown RBP25.37■■□□□ 1.65
BRCA1-228ENST00000618469 KDM5CP41229 1560 aa25.36■■□□□ 1.65
BRCA1-228ENST00000618469 CCNB3Q8WWL7 1395 aa25.35■■□□□ 1.65
BRCA1-228ENST00000618469 SYCP2Q9BX26 1530 aa25.32■■□□□ 1.64
BRCA1-228ENST00000618469 UHRF1BP1Q6BDS2 1440 aa25.3■■□□□ 1.64
BRCA1-228ENST00000618469 NCOA2Q15596 1464 aa25.3■■□□□ 1.64
BRCA1-228ENST00000618469 MAP3K1Q13233 1512 aa25.3■■□□□ 1.64
BRCA1-228ENST00000618469 LRRC9Q6ZRR7 1453 aa25.29■■□□□ 1.64
BRCA1-228ENST00000618469 DMRT2Q9Y5R5 561 aa25.29■■□□□ 1.64
BRCA1-228ENST00000618469 SETD1BQ9UPS6 1966 aaKnown RBP25.28■■□□□ 1.64
BRCA1-228ENST00000618469 ZNF777Q9ULD5 760 aaPredicted RBP25.28■■□□□ 1.64
BRCA1-228ENST00000618469 TRAPPC8Q9Y2L5 1435 aa25.28■■□□□ 1.64
BRCA1-228ENST00000618469 SOCS7O14512 581 aa25.26■■□□□ 1.63
BRCA1-228ENST00000618469 CFDP1Q9UEE9 299 aaPredicted RBP25.26■■□□□ 1.63
BRCA1-228ENST00000618469 DIP2CQ9Y2E4 1556 aa25.26■■□□□ 1.63
BRCA1-228ENST00000618469 C3P01024 1663 aa25.26■■□□□ 1.63
BRCA1-228ENST00000618469 ABCA6Q8N139 1617 aa25.24■■□□□ 1.63
BRCA1-228ENST00000618469 PLEKHH2Q8IVE3 1493 aa25.24■■□□□ 1.63
BRCA1-228ENST00000618469 MLH3Q9UHC1 1453 aa25.21■■□□□ 1.63
BRCA1-228ENST00000618469 SPATA31D1Q6ZQQ2 1576 aa25.19■■□□□ 1.62
BRCA1-228ENST00000618469 KIDINS220Q9ULH0 1771 aa25.19■■□□□ 1.62
BRCA1-228ENST00000618469 ESF1Q9H501 851 aaKnown RBP25.19■■□□□ 1.62
BRCA1-228ENST00000618469 KIAA1107Q9UPP5 1409 aa25.19■■□□□ 1.62
BRCA1-228ENST00000618469 KANK4Q5T7N3 995 aaPredicted RBP25.16■■□□□ 1.62
BRCA1-228ENST00000618469 CAMSAP2Q08AD1 1489 aa25.15■■□□□ 1.62
BRCA1-228ENST00000618469 REREQ9P2R6 1566 aa25.15■■□□□ 1.62
BRCA1-228ENST00000618469 INO80Q9ULG1 1556 aaPredicted RBP25.15■■□□□ 1.62
BRCA1-228ENST00000618469 PTPRTO14522 1441 aa25.15■■□□□ 1.62
BRCA1-228ENST00000618469 HNRNPMP52272 730 aaKnown RBP eCLIP25.14■■□□□ 1.62
BRCA1-228ENST00000618469 APLP2Q06481 763 aa25.14■■□□□ 1.62
BRCA1-228ENST00000618469 LTBP4Q8N2S1 1624 aa25.14■■□□□ 1.61
BRCA1-228ENST00000618469 ATP7AQ04656 1500 aa25.13■■□□□ 1.61
BRCA1-228ENST00000618469 ZNF644Q9H582 1327 aaPredicted RBP25.12■■□□□ 1.61
BRCA1-228ENST00000618469 MBD5Q9P267 1494 aa25.09■■□□□ 1.61
BRCA1-228ENST00000618469 SPAG9O60271 1321 aaKnown RBP25.09■■□□□ 1.61
BRCA1-228ENST00000618469 MYOM3Q5VTT5 1437 aa25.07■■□□□ 1.6
BRCA1-228ENST00000618469 NCOA1Q15788 1441 aa25.06■■□□□ 1.6
BRCA1-228ENST00000618469 CCDC141Q6ZP82 1450 aa25.06■■□□□ 1.6
BRCA1-228ENST00000618469 NCKAP5LQ9HCH0 1330 aa25.06■■□□□ 1.6
BRCA1-228ENST00000618469 AGLP35573 1532 aa25.06■■□□□ 1.6
BRCA1-228ENST00000618469 CAMSAP1Q5T5Y3 1602 aa25.04■■□□□ 1.6
BRCA1-228ENST00000618469 ARHGEF5Q12774 1597 aa25.03■■□□□ 1.6
BRCA1-228ENST00000618469 ADGBQ8N7X0 1667 aa25.02■■□□□ 1.6
BRCA1-228ENST00000618469 ZNF335Q9H4Z2 1342 aaPredicted RBP25.02■■□□□ 1.6
BRCA1-228ENST00000618469 MIA2Q96PC5 1412 aa25.01■■□□□ 1.59
BRCA1-228ENST00000618469 PLXNC1O60486 1568 aa25.01■■□□□ 1.59
BRCA1-228ENST00000618469 CNTLNQ9NXG0 1405 aa24.98■■□□□ 1.59
BRCA1-228ENST00000618469 UBAP1LF5GYI3 381 aa24.98■■□□□ 1.59
BRCA1-228ENST00000618469 ZMYM3Q14202 1370 aa24.97■■□□□ 1.59
BRCA1-228ENST00000618469 A2MP01023 1474 aa24.96■■□□□ 1.59
BRCA1-228ENST00000618469 PTPN23Q9H3S7 1636 aa24.96■■□□□ 1.59
BRCA1-228ENST00000618469 RTEL1-TNFRSF6BF6WH68 1400 aa24.95■■□□□ 1.59
BRCA1-228ENST00000618469 CLTCQ00610 1675 aaKnown RBP24.95■■□□□ 1.58
BRCA1-228ENST00000618469 IQSEC2Q5JU85 1478 aa24.94■■□□□ 1.58
BRCA1-228ENST00000618469 MROH2AA6NES4 1674 aa24.93■■□□□ 1.58
BRCA1-228ENST00000618469 FGD6Q6ZV73 1430 aa24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms