RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 TMF1P82094 1093 aa13.42□□□□□ -0.26
SMARCA1-205ENST00000617310 PRDM2Q13029 1718 aa13.41□□□□□ -0.26
SMARCA1-205ENST00000617310 GAPVD1Q14C86 1478 aa13.41□□□□□ -0.26
SMARCA1-205ENST00000617310 ANKRD30AQ9BXX3 1397 aa13.41□□□□□ -0.26
SMARCA1-205ENST00000617310 NCAPD3P42695 1498 aa13.4□□□□□ -0.26
SMARCA1-205ENST00000617310 HSP90AA1P07900 732 aaKnown RBP13.4□□□□□ -0.26
SMARCA1-205ENST00000617310 HSPA5P11021 654 aaKnown RBP13.4□□□□□ -0.26
SMARCA1-205ENST00000617310 MAPK8IP3Q9UPT6 1336 aa13.4□□□□□ -0.26
SMARCA1-205ENST00000617310 HMGXB3Q12766 1538 aa13.4□□□□□ -0.27
SMARCA1-205ENST00000617310 ANP32AP39687 249 aaKnown RBP13.39□□□□□ -0.27
SMARCA1-205ENST00000617310 ZNF644Q9H582 1327 aaPredicted RBP13.39□□□□□ -0.27
SMARCA1-205ENST00000617310 L3MBTL2Q969R5 705 aa13.38□□□□□ -0.27
SMARCA1-205ENST00000617310 NUDCQ9Y266 331 aa13.37□□□□□ -0.27
SMARCA1-205ENST00000617310 FRAT1Q92837 279 aaPredicted RBP13.35□□□□□ -0.27
SMARCA1-205ENST00000617310 MORC1Q86VD1 984 aa13.35□□□□□ -0.27
SMARCA1-205ENST00000617310 TRAK1Q9UPV9 953 aa13.34□□□□□ -0.27
SMARCA1-205ENST00000617310 SUPT16HQ9Y5B9 1047 aaKnown RBP13.33□□□□□ -0.28
SMARCA1-205ENST00000617310 MYH16Q9H6N6 1097 aa13.33□□□□□ -0.28
SMARCA1-205ENST00000617310 CCDC18Q5T9S5 1454 aa13.33□□□□□ -0.28
SMARCA1-205ENST00000617310 UPF2Q9HAU5 1272 aaKnown RBP13.32□□□□□ -0.28
SMARCA1-205ENST00000617310 ROCK2O75116 1388 aaKnown RBP13.31□□□□□ -0.28
SMARCA1-205ENST00000617310 EID1Q9Y6B2 187 aa13.3□□□□□ -0.28
SMARCA1-205ENST00000617310 NPHP1O15259 732 aa13.29□□□□□ -0.28
SMARCA1-205ENST00000617310 AFAP1Q8N556 730 aa13.29□□□□□ -0.28
SMARCA1-205ENST00000617310 CSB-PGBD3P0DP91 1061 aa13.28□□□□□ -0.28
SMARCA1-205ENST00000617310 RSPH4AQ5TD94 716 aa13.28□□□□□ -0.28
SMARCA1-205ENST00000617310 FTSJ3Q8IY81 847 aaKnown RBP13.28□□□□□ -0.28
SMARCA1-205ENST00000617310 HDGFL2Q7Z4V5 671 aaPredicted RBP13.27□□□□□ -0.29
SMARCA1-205ENST00000617310 NGDNQ8NEJ9 315 aaKnown RBP13.27□□□□□ -0.29
SMARCA1-205ENST00000617310 LTV1Q96GA3 475 aaPredicted RBP13.26□□□□□ -0.29
SMARCA1-205ENST00000617310 CCDC9Q9Y3X0 531 aaKnown RBP13.26□□□□□ -0.29
SMARCA1-205ENST00000617310 CC2D2AQ9P2K1 1620 aa13.25□□□□□ -0.29
SMARCA1-205ENST00000617310 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.25□□□□□ -0.299e-8■■■□□ 14.8
SMARCA1-205ENST00000617310 ZNF330Q9Y3S2 320 aaPredicted RBP13.25□□□□□ -0.29
SMARCA1-205ENST00000617310 U2AF1L5P0DN76 240 aaPredicted RBP13.25□□□□□ -0.29
SMARCA1-205ENST00000617310 U2AF1Q01081 240 aaKnown RBP eCLIP13.25□□□□□ -0.29
SMARCA1-205ENST00000617310 TIMELESSQ9UNS1 1208 aa13.23□□□□□ -0.29
SMARCA1-205ENST00000617310 ST20-MTHFSA0A0A6YYL1 179 aa13.22□□□□□ -0.29
SMARCA1-205ENST00000617310 RGS3P49796 1198 aa13.21□□□□□ -0.29
SMARCA1-205ENST00000617310 CFTRP13569 1480 aa13.21□□□□□ -0.29
SMARCA1-205ENST00000617310 MINK1Q8N4C8 1332 aaPredicted RBP13.2□□□□□ -0.3
SMARCA1-205ENST00000617310 TAOK2Q9UL54 1235 aa13.19□□□□□ -0.3
SMARCA1-205ENST00000617310 PRG4Q92954 1404 aaPredicted RBP13.19□□□□□ -0.3
SMARCA1-205ENST00000617310 GRIN2BQ13224 1484 aa13.18□□□□□ -0.3
SMARCA1-205ENST00000617310 RTF1Q92541 710 aaKnown RBP13.17□□□□□ -0.3
SMARCA1-205ENST00000617310 CCDC144AA2RUR9 1427 aa13.17□□□□□ -0.3
SMARCA1-205ENST00000617310 RAPGEF3O95398 923 aa13.16□□□□□ -0.3
SMARCA1-205ENST00000617310 CCDC146Q8IYE0 955 aa13.15□□□□□ -0.3
SMARCA1-205ENST00000617310 APBB1O00213 710 aa13.14□□□□□ -0.31
SMARCA1-205ENST00000617310 OS9Q13438 667 aaPredicted RBP13.14□□□□□ -0.31
SMARCA1-205ENST00000617310 B4GALNT3Q6L9W6 998 aa13.14□□□□□ -0.31
SMARCA1-205ENST00000617310 TERF2IPQ9NYB0 399 aa13.14□□□□□ -0.31
SMARCA1-205ENST00000617310 KTN1Q86UP2 1357 aaKnown RBP13.14□□□□□ -0.31
SMARCA1-205ENST00000617310 PHLDB1Q86UU1 1377 aa13.14□□□□□ -0.31
SMARCA1-205ENST00000617310 NBR1Q14596 966 aa13.14□□□□□ -0.31
SMARCA1-205ENST00000617310 AMPHP49418 695 aa13.13□□□□□ -0.31
SMARCA1-205ENST00000617310 KIF15Q9NS87 1388 aa13.13□□□□□ -0.31
SMARCA1-205ENST00000617310 POLA1P09884 1462 aaPredicted RBP13.13□□□□□ -0.31
SMARCA1-205ENST00000617310 VGFO15240 615 aaPredicted RBP13.13□□□□□ -0.31
SMARCA1-205ENST00000617310 MRC2Q9UBG0 1479 aa13.13□□□□□ -0.31
SMARCA1-205ENST00000617310 TOPBP1Q92547 1522 aa13.12□□□□□ -0.31
SMARCA1-205ENST00000617310 TPRNQ4KMQ1 711 aa13.12□□□□□ -0.31
SMARCA1-205ENST00000617310 AEBP2Q6ZN18 517 aaPredicted RBP13.12□□□□□ -0.31
SMARCA1-205ENST00000617310 TMEM132EQ6IEE7 984 aa13.12□□□□□ -0.31
SMARCA1-205ENST00000617310 SYNJ1O43426 1573 aa13.1□□□□□ -0.31
SMARCA1-205ENST00000617310 BIVM-ERCC5R4GMW8 1640 aa13.1□□□□□ -0.31
SMARCA1-205ENST00000617310 RRP7AQ9Y3A4 280 aaKnown RBP13.1□□□□□ -0.31
SMARCA1-205ENST00000617310 DHX57Q6P158 1386 aaKnown RBP13.1□□□□□ -0.31
SMARCA1-205ENST00000617310 PANK3Q9H999 370 aa13.1□□□□□ -0.31
SMARCA1-205ENST00000617310 PNNQ9H307 717 aaKnown RBP13.09□□□□□ -0.31
SMARCA1-205ENST00000617310 SNAPC4Q5SXM2 1469 aa13.08□□□□□ -0.31
SMARCA1-205ENST00000617310 MYOM3Q5VTT5 1437 aa13.07□□□□□ -0.32
SMARCA1-205ENST00000617310 ELL2O00472 640 aaPredicted RBP13.07□□□□□ -0.32
SMARCA1-205ENST00000617310 ARAP1Q96P48 1450 aa13.07□□□□□ -0.32
SMARCA1-205ENST00000617310 FGD6Q6ZV73 1430 aa13.07□□□□□ -0.32
SMARCA1-205ENST00000617310 EIF3AQ14152 1382 aaKnown RBP13.07□□□□□ -0.32
SMARCA1-205ENST00000617310 CLUAP1Q96AJ1 413 aa13.07□□□□□ -0.32
SMARCA1-205ENST00000617310 NUTM2GQ5VZR2 741 aa13.06□□□□□ -0.32
SMARCA1-205ENST00000617310 CUX1P39880 1505 aa13.05□□□□□ -0.32
SMARCA1-205ENST00000617310 IFT140Q96RY7 1462 aa13.05□□□□□ -0.32
SMARCA1-205ENST00000617310 SCAPERQ9BY12 1400 aa13.04□□□□□ -0.32
SMARCA1-205ENST00000617310 GOLGA2Q08379 1002 aa13.03□□□□□ -0.32
SMARCA1-205ENST00000617310 ANKRD50Q9ULJ7 1429 aa13.03□□□□□ -0.32
SMARCA1-205ENST00000617310 KIF21BO75037 1637 aa13.03□□□□□ -0.32
SMARCA1-205ENST00000617310 RALBP1Q15311 655 aa13.02□□□□□ -0.33
SMARCA1-205ENST00000617310 CFAP70Q5T0N1 1121 aa13.02□□□□□ -0.33
SMARCA1-205ENST00000617310 NLRP13Q86W25 1043 aa13.02□□□□□ -0.33
SMARCA1-205ENST00000617310 NCOA2Q15596 1464 aa13.01□□□□□ -0.33
SMARCA1-205ENST00000617310 SYNJ2O15056 1496 aa13.01□□□□□ -0.33
SMARCA1-205ENST00000617310 USP47Q96K76 1375 aa13□□□□□ -0.33
SMARCA1-205ENST00000617310 CCER2I3L3R5 266 aa13□□□□□ -0.33
SMARCA1-205ENST00000617310 SLC4A10Q6U841 1118 aa13□□□□□ -0.33
SMARCA1-205ENST00000617310 BCL2L13Q9BXK5 485 aa13□□□□□ -0.33
SMARCA1-205ENST00000617310 TXNDC2Q86VQ3 553 aa13□□□□□ -0.33
SMARCA1-205ENST00000617310 EVC2Q86UK5 1308 aa13□□□□□ -0.33
SMARCA1-205ENST00000617310 KCNJ4P48050 445 aa13□□□□□ -0.33
SMARCA1-205ENST00000617310 PSME1Q06323 249 aa13□□□□□ -0.33
SMARCA1-205ENST00000617310 COG3Q96JB2 828 aa13□□□□□ -0.33
SMARCA1-205ENST00000617310 ARHGAP5Q13017 1502 aa13□□□□□ -0.33
SMARCA1-205ENST00000617310 LRRC9Q6ZRR7 1453 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms