RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 CHIC2Q9UKJ5 165 aa25■■□□□ 1.59
SHKBP1-216ENST00000598201 ZNF644Q9H582 1327 aaPredicted RBP24.99■■□□□ 1.59
SHKBP1-216ENST00000598201 TRHP20396 242 aaPredicted RBP24.99■■□□□ 1.59
SHKBP1-216ENST00000598201 ABCC10Q5T3U5 1492 aa24.98■■□□□ 1.59
SHKBP1-216ENST00000598201 FAM69CQ0P6D2 419 aa24.97■■□□□ 1.59
SHKBP1-216ENST00000598201 GPATCH8Q9UKJ3 1502 aaKnown RBP24.96■■□□□ 1.59
SHKBP1-216ENST00000598201 RRP7BPQ9NSQ0 103 aa24.96■■□□□ 1.59
SHKBP1-216ENST00000598201 ZNF316A6NFI3 1004 aaPredicted RBP24.95■■□□□ 1.59
SHKBP1-216ENST00000598201 DIP2BQ9P265 1576 aa24.94■■□□□ 1.58
SHKBP1-216ENST00000598201 DAPK1P53355 1430 aa24.92■■□□□ 1.58
SHKBP1-216ENST00000598201 CFDP1Q9UEE9 299 aaPredicted RBP24.92■■□□□ 1.58
SHKBP1-216ENST00000598201 ABCC5O15440 1437 aa24.91■■□□□ 1.58
SHKBP1-216ENST00000598201 ITSN2Q9NZM3 1697 aa24.91■■□□□ 1.58
SHKBP1-216ENST00000598201 AKNAQ7Z591 1439 aa24.9■■□□□ 1.58
SHKBP1-216ENST00000598201 DNMT1P26358 1616 aaKnown RBP24.9■■□□□ 1.58
SHKBP1-216ENST00000598201 CAMSAP2Q08AD1 1489 aa24.88■■□□□ 1.57
SHKBP1-216ENST00000598201 GCC2Q8IWJ2 1684 aa24.88■■□□□ 1.57
SHKBP1-216ENST00000598201 KIF13AQ9H1H9 1805 aa24.88■■□□□ 1.57
SHKBP1-216ENST00000598201 GLI2P10070 1586 aa24.88■■□□□ 1.57
SHKBP1-216ENST00000598201 SIN3AQ96ST3 1273 aa24.87■■□□□ 1.57
SHKBP1-216ENST00000598201 KDM6BO15054 1643 aa24.85■■□□□ 1.57
SHKBP1-216ENST00000598201 DIEXFQ68CQ4 756 aaKnown RBP24.84■■□□□ 1.57
SHKBP1-216ENST00000598201 ZNF777Q9ULD5 760 aaPredicted RBP24.84■■□□□ 1.57
SHKBP1-216ENST00000598201 CDC42BPAQ5VT25 1732 aa24.83■■□□□ 1.57
SHKBP1-216ENST00000598201 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.83■■□□□ 1.57
SHKBP1-216ENST00000598201 ROCK1Q13464 1354 aa24.82■■□□□ 1.56
SHKBP1-216ENST00000598201 ABCA9Q8IUA7 1624 aa24.82■■□□□ 1.56
SHKBP1-216ENST00000598201 NEUROD1Q13562 356 aa24.81■■□□□ 1.56
SHKBP1-216ENST00000598201 CD109Q6YHK3 1445 aa24.81■■□□□ 1.56
SHKBP1-216ENST00000598201 TTC37Q6PGP7 1564 aa24.79■■□□□ 1.56
SHKBP1-216ENST00000598201 MAP3K4Q9Y6R4 1608 aa24.79■■□□□ 1.56
SHKBP1-216ENST00000598201 TSPOAP1O95153 1857 aa24.73■■□□□ 1.55
SHKBP1-216ENST00000598201 TRIM52Q96A61 297 aa24.72■■□□□ 1.55
SHKBP1-216ENST00000598201 DENND4BO75064 1496 aaPredicted RBP24.72■■□□□ 1.55
SHKBP1-216ENST00000598201 PLCH2O75038 1416 aa24.71■■□□□ 1.55
SHKBP1-216ENST00000598201 CROCC2H7BZ55 1655 aa24.71■■□□□ 1.55
SHKBP1-216ENST00000598201 NCOA1Q15788 1441 aa24.7■■□□□ 1.54
SHKBP1-216ENST00000598201 MYO5CQ9NQX4 1742 aa24.68■■□□□ 1.54
SHKBP1-216ENST00000598201 TIMELESSQ9UNS1 1208 aa24.68■■□□□ 1.54
SHKBP1-216ENST00000598201 ADGRL2O95490 1459 aa24.68■■□□□ 1.54
SHKBP1-216ENST00000598201 PPRC1Q5VV67 1664 aaKnown RBP24.67■■□□□ 1.54
SHKBP1-216ENST00000598201 ADGBQ8N7X0 1667 aa24.67■■□□□ 1.54
SHKBP1-216ENST00000598201 CDC42BPBQ9Y5S2 1711 aa24.67■■□□□ 1.54
SHKBP1-216ENST00000598201 PREX2Q70Z35 1606 aa24.66■■□□□ 1.54
SHKBP1-216ENST00000598201 TEX14Q8IWB6 1497 aa24.66■■□□□ 1.54
SHKBP1-216ENST00000598201 EFCAB2Q5VUJ9 269 aa24.64■■□□□ 1.53
SHKBP1-216ENST00000598201 MPHOSPH9Q99550 1183 aa24.64■■□□□ 1.53
SHKBP1-216ENST00000598201 HNRNPMP52272 730 aaKnown RBP eCLIP24.63■■□□□ 1.53
SHKBP1-216ENST00000598201 SAMD9LQ8IVG5 1584 aa24.63■■□□□ 1.53
SHKBP1-216ENST00000598201 FANCAO15360 1455 aa24.63■■□□□ 1.53
SHKBP1-216ENST00000598201 ARHGAP5Q13017 1502 aa24.63■■□□□ 1.53
SHKBP1-216ENST00000598201 ARAP3Q8WWN8 1544 aa24.63■■□□□ 1.53
SHKBP1-216ENST00000598201 MBD5Q9P267 1494 aa24.62■■□□□ 1.53
SHKBP1-216ENST00000598201 ANKRD30AQ9BXX3 1397 aa24.61■■□□□ 1.53
SHKBP1-216ENST00000598201 SHANK2Q9UPX8 1470 aa24.61■■□□□ 1.53
SHKBP1-216ENST00000598201 C9orf84Q5VXU9 1444 aa24.6■■□□□ 1.53
SHKBP1-216ENST00000598201 PPP1R15AO75807 674 aaPredicted RBP24.59■■□□□ 1.53
SHKBP1-216ENST00000598201 ARHGEF5Q12774 1597 aa24.59■■□□□ 1.53
SHKBP1-216ENST00000598201 NEO1Q92859 1461 aa24.59■■□□□ 1.53
SHKBP1-216ENST00000598201 TONSLQ96HA7 1378 aa24.57■■□□□ 1.52
SHKBP1-216ENST00000598201 ACIN1Q9UKV3 1341 aaKnown RBP24.57■■□□□ 1.52
SHKBP1-216ENST00000598201 FOXD1Q16676 465 aa24.56■■□□□ 1.52
SHKBP1-216ENST00000598201 CFAP74Q9C0B2 1584 aa24.55■■□□□ 1.52
SHKBP1-216ENST00000598201 TSPY4P0CV99 314 aa24.55■■□□□ 1.52
SHKBP1-216ENST00000598201 TSPY10P0CW01 314 aa24.55■■□□□ 1.52
SHKBP1-216ENST00000598201 CCDC141Q6ZP82 1450 aa24.53■■□□□ 1.52
SHKBP1-216ENST00000598201 ANKRD50Q9ULJ7 1429 aa24.53■■□□□ 1.52
SHKBP1-216ENST00000598201 SYCP2Q9BX26 1530 aa24.52■■□□□ 1.52
SHKBP1-216ENST00000598201 PZPP20742 1482 aa24.51■■□□□ 1.51
SHKBP1-216ENST00000598201 SLC4A1APQ9BWU0 796 aaKnown RBP24.5■■□□□ 1.51
SHKBP1-216ENST00000598201 ADGRL1O94910 1474 aa24.5■■□□□ 1.51
SHKBP1-216ENST00000598201 SCAPERQ9BY12 1400 aa24.49■■□□□ 1.51
SHKBP1-216ENST00000598201 ANKRD30BQ9BXX2 1392 aa24.48■■□□□ 1.51
SHKBP1-216ENST00000598201 RSPH4AQ5TD94 716 aa24.47■■□□□ 1.51
SHKBP1-216ENST00000598201 KIF15Q9NS87 1388 aa24.47■■□□□ 1.51
SHKBP1-216ENST00000598201 COL17A1Q9UMD9 1497 aaPredicted RBP24.46■■□□□ 1.51
SHKBP1-216ENST00000598201 KIAA1107Q9UPP5 1409 aa24.45■■□□□ 1.5
SHKBP1-216ENST00000598201 PLEKHH2Q8IVE3 1493 aa24.45■■□□□ 1.5
SHKBP1-216ENST00000598201 RAPGEF3O95398 923 aa24.44■■□□□ 1.5
SHKBP1-216ENST00000598201 ABCC1P33527 1531 aa24.44■■□□□ 1.5
SHKBP1-216ENST00000598201 ARHGEF12Q9NZN5 1544 aa24.44■■□□□ 1.5
SHKBP1-216ENST00000598201 MIER1Q8N108 512 aa24.44■■□□□ 1.5
SHKBP1-216ENST00000598201 AFAP1Q8N556 730 aa24.4■■□□□ 1.5
SHKBP1-216ENST00000598201 MAST1Q9Y2H9 1570 aa24.4■■□□□ 1.5
SHKBP1-216ENST00000598201 TRAPPC8Q9Y2L5 1435 aa24.38■■□□□ 1.49
SHKBP1-216ENST00000598201 POGZQ7Z3K3 1410 aa24.38■■□□□ 1.49
SHKBP1-216ENST00000598201 RPRD2Q5VT52 1461 aaKnown RBP24.37■■□□□ 1.49
SHKBP1-216ENST00000598201 NUP155O75694 1391 aa24.37■■□□□ 1.49
SHKBP1-216ENST00000598201 ZNF518AQ6AHZ1 1483 aa24.36■■□□□ 1.49
SHKBP1-216ENST00000598201 PKD2Q13563 968 aa24.36■■□□□ 1.49
SHKBP1-216ENST00000598201 L3MBTL2Q969R5 705 aa24.34■■□□□ 1.49
SHKBP1-216ENST00000598201 RICTORQ6R327 1708 aa24.34■■□□□ 1.49
SHKBP1-216ENST00000598201 KDM5DQ9BY66 1539 aa24.34■■□□□ 1.49
SHKBP1-216ENST00000598201 FRMPD1Q5SYB0 1578 aa24.33■■□□□ 1.49
SHKBP1-216ENST00000598201 HIRIP3Q9BW71 556 aaPredicted RBP24.32■■□□□ 1.48
SHKBP1-216ENST00000598201 PLXNC1O60486 1568 aa24.3■■□□□ 1.48
SHKBP1-216ENST00000598201 MYT1LQ9UL68 1186 aa24.29■■□□□ 1.48
SHKBP1-216ENST00000598201 KDM5CP41229 1560 aa24.28■■□□□ 1.48
SHKBP1-216ENST00000598201 SPAG9O60271 1321 aaKnown RBP24.28■■□□□ 1.48
SHKBP1-216ENST00000598201 ZMYM4Q5VZL5 1548 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms