RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 RIMS1Q86UR5 1692 aaKnown RBP20.69■□□□□ 0.9
TRIM28-212ENST00000597995 ARHGAP35Q9NRY4 1499 aa20.69■□□□□ 0.9
TRIM28-212ENST00000597995 HECW1Q76N89 1606 aa20.68■□□□□ 0.9
TRIM28-212ENST00000597995 EFCAB2Q5VUJ9 269 aa20.68■□□□□ 0.9
TRIM28-212ENST00000597995 EHMT2Q96KQ7 1210 aa20.65■□□□□ 0.9
TRIM28-212ENST00000597995 ATP10AO60312 1499 aa20.62■□□□□ 0.89
TRIM28-212ENST00000597995 SIGLEC1Q9BZZ2 1709 aa20.62■□□□□ 0.89
TRIM28-212ENST00000597995 MYO5CQ9NQX4 1742 aa20.62■□□□□ 0.89
TRIM28-212ENST00000597995 TROQ12816 1431 aaPredicted RBP20.61■□□□□ 0.89
TRIM28-212ENST00000597995 MLECQ14165 292 aa20.6■□□□□ 0.89
TRIM28-212ENST00000597995 KIF14Q15058 1648 aa20.59■□□□□ 0.89
TRIM28-212ENST00000597995 CLIP1P30622 1438 aa20.59■□□□□ 0.89
TRIM28-212ENST00000597995 C9orf84Q5VXU9 1444 aa20.59■□□□□ 0.89
TRIM28-212ENST00000597995 HSPA2P54652 639 aa20.58■□□□□ 0.89
TRIM28-212ENST00000597995 ZNF518AQ6AHZ1 1483 aa20.57■□□□□ 0.88
TRIM28-212ENST00000597995 PLPPR3Q6T4P5 718 aa20.57■□□□□ 0.88
TRIM28-212ENST00000597995 ARHGEF12Q9NZN5 1544 aa20.56■□□□□ 0.88
TRIM28-212ENST00000597995 FER1L4A9Z1Z3 1794 aa20.56■□□□□ 0.88
TRIM28-212ENST00000597995 ARHGAP5Q13017 1502 aa20.55■□□□□ 0.88
TRIM28-212ENST00000597995 AFAP1Q8N556 730 aa20.54■□□□□ 0.88
TRIM28-212ENST00000597995 KDM5CP41229 1560 aa20.52■□□□□ 0.88
TRIM28-212ENST00000597995 LRRIQ1Q96JM4 1722 aa20.5■□□□□ 0.87
TRIM28-212ENST00000597995 CASKIN1Q8WXD9 1431 aa20.5■□□□□ 0.87
TRIM28-212ENST00000597995 CCDC18Q5T9S5 1454 aa20.49■□□□□ 0.87
TRIM28-212ENST00000597995 MYT1LQ9UL68 1186 aa20.48■□□□□ 0.87
TRIM28-212ENST00000597995 MLH3Q9UHC1 1453 aa20.48■□□□□ 0.87
TRIM28-212ENST00000597995 CDC42BPBQ9Y5S2 1711 aa20.47■□□□□ 0.87
TRIM28-212ENST00000597995 REREQ9P2R6 1566 aa20.46■□□□□ 0.87
TRIM28-212ENST00000597995 CEBPAP49715 358 aaPredicted RBP20.46■□□□□ 0.87
TRIM28-212ENST00000597995 DIP2CQ9Y2E4 1556 aa20.44■□□□□ 0.86
TRIM28-212ENST00000597995 SETD1BQ9UPS6 1966 aaKnown RBP20.43■□□□□ 0.86
TRIM28-212ENST00000597995 PREX2Q70Z35 1606 aa20.43■□□□□ 0.86
TRIM28-212ENST00000597995 PREX1Q8TCU6 1659 aa20.43■□□□□ 0.86
TRIM28-212ENST00000597995 CERKQ8TCT0 537 aa20.43■□□□□ 0.86
TRIM28-212ENST00000597995 TRAPPC8Q9Y2L5 1435 aa20.42■□□□□ 0.86
TRIM28-212ENST00000597995 ABCC1P33527 1531 aa20.42■□□□□ 0.86
TRIM28-212ENST00000597995 AGLP35573 1532 aa20.41■□□□□ 0.86
TRIM28-212ENST00000597995 DMRT2Q9Y5R5 561 aa20.4■□□□□ 0.86
TRIM28-212ENST00000597995 ABCA6Q8N139 1617 aa20.39■□□□□ 0.86
TRIM28-212ENST00000597995 FYCO1Q9BQS8 1478 aa20.39■□□□□ 0.85
TRIM28-212ENST00000597995 UHRF1BP1Q6BDS2 1440 aa20.38■□□□□ 0.85
TRIM28-212ENST00000597995 ITSN2Q9NZM3 1697 aa20.37■□□□□ 0.85
TRIM28-212ENST00000597995 ESF1Q9H501 851 aaKnown RBP20.36■□□□□ 0.85
TRIM28-212ENST00000597995 CDC42BPAQ5VT25 1732 aa20.36■□□□□ 0.85
TRIM28-212ENST00000597995 KIDINS220Q9ULH0 1771 aa20.34■□□□□ 0.85
TRIM28-212ENST00000597995 STRCQ7RTU9 1775 aa20.32■□□□□ 0.84
TRIM28-212ENST00000597995 CNTLNQ9NXG0 1405 aa20.32■□□□□ 0.84
TRIM28-212ENST00000597995 C3P01024 1663 aa20.32■□□□□ 0.84
TRIM28-212ENST00000597995 ZNF777Q9ULD5 760 aaPredicted RBP20.31■□□□□ 0.84
TRIM28-212ENST00000597995 GPATCH8Q9UKJ3 1502 aaKnown RBP20.31■□□□□ 0.84
TRIM28-212ENST00000597995 SAMD9LQ8IVG5 1584 aa20.29■□□□□ 0.84
TRIM28-212ENST00000597995 SPAG9O60271 1321 aaKnown RBP20.28■□□□□ 0.84
TRIM28-212ENST00000597995 KIAA1107Q9UPP5 1409 aa20.28■□□□□ 0.84
TRIM28-212ENST00000597995 HNRNPMP52272 730 aaKnown RBP eCLIP20.27■□□□□ 0.84
TRIM28-212ENST00000597995 PTPRTO14522 1441 aa20.27■□□□□ 0.83
TRIM28-212ENST00000597995 PLEKHH2Q8IVE3 1493 aa20.26■□□□□ 0.83
TRIM28-212ENST00000597995 CFDP1Q9UEE9 299 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-212ENST00000597995 SYCP2Q9BX26 1530 aa20.26■□□□□ 0.83
TRIM28-212ENST00000597995 CCNB3Q8WWL7 1395 aa20.23■□□□□ 0.83
TRIM28-212ENST00000597995 NPATQ14207 1427 aa20.23■□□□□ 0.83
TRIM28-212ENST00000597995 MROH2AA6NES4 1674 aa20.22■□□□□ 0.83
TRIM28-212ENST00000597995 ZMYM3Q14202 1370 aa20.21■□□□□ 0.83
TRIM28-212ENST00000597995 MTUS2Q5JR59 1369 aa20.21■□□□□ 0.83
TRIM28-212ENST00000597995 ATP7AQ04656 1500 aa20.21■□□□□ 0.83
TRIM28-212ENST00000597995 NCOA1Q15788 1441 aa20.19■□□□□ 0.82
TRIM28-212ENST00000597995 A2MP01023 1474 aa20.18■□□□□ 0.82
TRIM28-212ENST00000597995 PPP6R1Q9UPN7 881 aa20.18■□□□□ 0.82
TRIM28-212ENST00000597995 INO80Q9ULG1 1556 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-212ENST00000597995 SUPT6HQ7KZ85 1726 aaKnown RBP20.17■□□□□ 0.82
TRIM28-212ENST00000597995 PLXNC1O60486 1568 aa20.17■□□□□ 0.82
TRIM28-212ENST00000597995 CAMSAP1Q5T5Y3 1602 aa20.13■□□□□ 0.81
TRIM28-212ENST00000597995 LTBP4Q8N2S1 1624 aa20.13■□□□□ 0.81
TRIM28-212ENST00000597995 GGT6Q6P531 493 aa20.12■□□□□ 0.81
TRIM28-212ENST00000597995 ZNF644Q9H582 1327 aaPredicted RBP20.11■□□□□ 0.81
TRIM28-212ENST00000597995 EHBP1L1Q8N3D4 1523 aa20.11■□□□□ 0.81
TRIM28-212ENST00000597995 IQSEC2Q5JU85 1478 aa20.11■□□□□ 0.81
TRIM28-212ENST00000597995 MBD5Q9P267 1494 aa20.11■□□□□ 0.81
TRIM28-212ENST00000597995 RTEL1-TNFRSF6BF6WH68 1400 aa20.1■□□□□ 0.81
TRIM28-212ENST00000597995 PTPRKQ15262 1439 aa20.1■□□□□ 0.81
TRIM28-212ENST00000597995 CEP162Q5TB80 1403 aa20.1■□□□□ 0.81
TRIM28-212ENST00000597995 CLTCQ00610 1675 aaKnown RBP20.1■□□□□ 0.81
TRIM28-212ENST00000597995 TIAM1Q13009 1591 aa20.1■□□□□ 0.81
TRIM28-212ENST00000597995 ADGBQ8N7X0 1667 aa20.1■□□□□ 0.81
TRIM28-212ENST00000597995 PLA2R1Q13018 1463 aa20.07■□□□□ 0.8
TRIM28-212ENST00000597995 PKD2Q13563 968 aa20.07■□□□□ 0.8
TRIM28-212ENST00000597995 NCKAP5LQ9HCH0 1330 aa20.06■□□□□ 0.8
TRIM28-212ENST00000597995 ZNF142P52746 1687 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-212ENST00000597995 DHX29Q7Z478 1369 aaKnown RBP20.06■□□□□ 0.8
TRIM28-212ENST00000597995 RSPH4AQ5TD94 716 aa20.05■□□□□ 0.8
TRIM28-212ENST00000597995 MYO3AQ8NEV4 1616 aa20.05■□□□□ 0.8
TRIM28-212ENST00000597995 CEP170BQ9Y4F5 1589 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-212ENST00000597995 TCOF1Q13428 1488 aaKnown RBP20.02■□□□□ 0.8
TRIM28-212ENST00000597995 DISP3Q9P2K9 1392 aa20.01■□□□□ 0.79
TRIM28-212ENST00000597995 ZNF335Q9H4Z2 1342 aaPredicted RBP20■□□□□ 0.79
TRIM28-212ENST00000597995 NCOA2Q15596 1464 aa19.99■□□□□ 0.79
TRIM28-212ENST00000597995 CCDC141Q6ZP82 1450 aa19.99■□□□□ 0.79
TRIM28-212ENST00000597995 KIF3BO15066 747 aa19.99■□□□□ 0.79
TRIM28-212ENST00000597995 A2ML1A8K2U0 1454 aa19.99■□□□□ 0.79
TRIM28-212ENST00000597995 FAM135AQ9P2D6 1515 aa19.97■□□□□ 0.79
TRIM28-212ENST00000597995 CAMSAP2Q08AD1 1489 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms