RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 MAGI2Q86UL8 1455 aa27.44■■□□□ 1.98
SHKBP1-215ENST00000597649 HECW1Q76N89 1606 aa27.43■■□□□ 1.98
SHKBP1-215ENST00000597649 ATP1B4Q9UN42 357 aaPredicted RBP27.42■■□□□ 1.98
SHKBP1-215ENST00000597649 UBTFP17480 764 aaKnown RBP27.39■■□□□ 1.98
SHKBP1-215ENST00000597649 EFCAB2Q5VUJ9 269 aa27.37■■□□□ 1.97
SHKBP1-215ENST00000597649 ATP10AO60312 1499 aa27.33■■□□□ 1.97
SHKBP1-215ENST00000597649 ARHGAP35Q9NRY4 1499 aa27.33■■□□□ 1.97
SHKBP1-215ENST00000597649 FMN1Q68DA7 1419 aa27.32■■□□□ 1.96
SHKBP1-215ENST00000597649 CEBPAP49715 358 aaPredicted RBP27.3■■□□□ 1.96
SHKBP1-215ENST00000597649 AFAP1Q8N556 730 aa27.3■■□□□ 1.96
SHKBP1-215ENST00000597649 CDK11AQ9UQ88 783 aaPredicted RBP27.3■■□□□ 1.96
SHKBP1-215ENST00000597649 ARHGEF12Q9NZN5 1544 aa27.28■■□□□ 1.96
SHKBP1-215ENST00000597649 C9orf84Q5VXU9 1444 aa27.27■■□□□ 1.96
SHKBP1-215ENST00000597649 CERKQ8TCT0 537 aa27.27■■□□□ 1.96
SHKBP1-215ENST00000597649 KIF14Q15058 1648 aa27.26■■□□□ 1.95
SHKBP1-215ENST00000597649 FER1L4A9Z1Z3 1794 aa27.25■■□□□ 1.95
SHKBP1-215ENST00000597649 TROQ12816 1431 aaPredicted RBP27.24■■□□□ 1.95
SHKBP1-215ENST00000597649 MYO5CQ9NQX4 1742 aa27.21■■□□□ 1.95
SHKBP1-215ENST00000597649 ZNF518AQ6AHZ1 1483 aa27.19■■□□□ 1.94
SHKBP1-215ENST00000597649 CHIC1Q5VXU3 224 aa27.19■■□□□ 1.94
SHKBP1-215ENST00000597649 ARHGAP5Q13017 1502 aa27.17■■□□□ 1.94
SHKBP1-215ENST00000597649 KDM5CP41229 1560 aa27.15■■□□□ 1.94
SHKBP1-215ENST00000597649 MYT1LQ9UL68 1186 aa27.15■■□□□ 1.94
SHKBP1-215ENST00000597649 CLIP1P30622 1438 aa27.13■■□□□ 1.93
SHKBP1-215ENST00000597649 LRRIQ1Q96JM4 1722 aa27.12■■□□□ 1.93
SHKBP1-215ENST00000597649 TRAPPC8Q9Y2L5 1435 aa27.1■■□□□ 1.93
SHKBP1-215ENST00000597649 DIP2CQ9Y2E4 1556 aa27.09■■□□□ 1.93
SHKBP1-215ENST00000597649 PREX1Q8TCU6 1659 aa27.09■■□□□ 1.93
SHKBP1-215ENST00000597649 MLH3Q9UHC1 1453 aa27.08■■□□□ 1.93
SHKBP1-215ENST00000597649 CDC42BPBQ9Y5S2 1711 aa27.07■■□□□ 1.92
SHKBP1-215ENST00000597649 STRCQ7RTU9 1775 aa27.05■■□□□ 1.92
SHKBP1-215ENST00000597649 DMRT2Q9Y5R5 561 aa27.05■■□□□ 1.92
SHKBP1-215ENST00000597649 UHRF1BP1Q6BDS2 1440 aa27.05■■□□□ 1.92
SHKBP1-215ENST00000597649 REREQ9P2R6 1566 aa27.04■■□□□ 1.92
SHKBP1-215ENST00000597649 SETD1BQ9UPS6 1966 aaKnown RBP27.04■■□□□ 1.92
SHKBP1-215ENST00000597649 ABCA6Q8N139 1617 aa27.03■■□□□ 1.92
SHKBP1-215ENST00000597649 CASKIN1Q8WXD9 1431 aa27.03■■□□□ 1.92
SHKBP1-215ENST00000597649 ABCC1P33527 1531 aa27■■□□□ 1.91
SHKBP1-215ENST00000597649 AGLP35573 1532 aa26.99■■□□□ 1.91
SHKBP1-215ENST00000597649 PREX2Q70Z35 1606 aa26.98■■□□□ 1.91
SHKBP1-215ENST00000597649 ESF1Q9H501 851 aaKnown RBP26.96■■□□□ 1.91
SHKBP1-215ENST00000597649 CCDC18Q5T9S5 1454 aa26.95■■□□□ 1.91
SHKBP1-215ENST00000597649 C3P01024 1663 aa26.95■■□□□ 1.9
SHKBP1-215ENST00000597649 ZNF777Q9ULD5 760 aaPredicted RBP26.93■■□□□ 1.9
SHKBP1-215ENST00000597649 ITSN2Q9NZM3 1697 aa26.92■■□□□ 1.9
SHKBP1-215ENST00000597649 PTPRTO14522 1441 aa26.92■■□□□ 1.9
SHKBP1-215ENST00000597649 KIDINS220Q9ULH0 1771 aa26.92■■□□□ 1.9
SHKBP1-215ENST00000597649 HNRNPMP52272 730 aaKnown RBP eCLIP26.9■■□□□ 1.9
SHKBP1-215ENST00000597649 CDC42BPAQ5VT25 1732 aa26.88■■□□□ 1.89
SHKBP1-215ENST00000597649 GPATCH8Q9UKJ3 1502 aaKnown RBP26.87■■□□□ 1.89
SHKBP1-215ENST00000597649 SAMD9LQ8IVG5 1584 aa26.87■■□□□ 1.89
SHKBP1-215ENST00000597649 CNTLNQ9NXG0 1405 aa26.86■■□□□ 1.89
SHKBP1-215ENST00000597649 SPAG9O60271 1321 aaKnown RBP26.86■■□□□ 1.89
SHKBP1-215ENST00000597649 ILDR2Q71H61 639 aa26.85■■□□□ 1.89
SHKBP1-215ENST00000597649 FYCO1Q9BQS8 1478 aa26.84■■□□□ 1.89
SHKBP1-215ENST00000597649 ZMYM3Q14202 1370 aa26.84■■□□□ 1.89
SHKBP1-215ENST00000597649 NCOA1Q15788 1441 aa26.83■■□□□ 1.89
SHKBP1-215ENST00000597649 LTBP4Q8N2S1 1624 aa26.82■■□□□ 1.88
SHKBP1-215ENST00000597649 DISP3Q9P2K9 1392 aa26.81■■□□□ 1.88
SHKBP1-215ENST00000597649 SYCP2Q9BX26 1530 aa26.8■■□□□ 1.88
SHKBP1-215ENST00000597649 CFDP1Q9UEE9 299 aaPredicted RBP26.78■■□□□ 1.88
SHKBP1-215ENST00000597649 NPATQ14207 1427 aa26.77■■□□□ 1.88
SHKBP1-215ENST00000597649 KIAA1107Q9UPP5 1409 aa26.76■■□□□ 1.87
SHKBP1-215ENST00000597649 NCKAP5LQ9HCH0 1330 aa26.76■■□□□ 1.87
SHKBP1-215ENST00000597649 CAMSAP1Q5T5Y3 1602 aa26.73■■□□□ 1.87
SHKBP1-215ENST00000597649 CCNB3Q8WWL7 1395 aa26.72■■□□□ 1.87
SHKBP1-215ENST00000597649 GGT6Q6P531 493 aa26.72■■□□□ 1.87
SHKBP1-215ENST00000597649 SUPT6HQ7KZ85 1726 aaKnown RBP26.72■■□□□ 1.87
SHKBP1-215ENST00000597649 ZNF644Q9H582 1327 aaPredicted RBP26.71■■□□□ 1.87
SHKBP1-215ENST00000597649 ATP7AQ04656 1500 aa26.71■■□□□ 1.87
SHKBP1-215ENST00000597649 A2MP01023 1474 aa26.71■■□□□ 1.87
SHKBP1-215ENST00000597649 MROH2AA6NES4 1674 aa26.7■■□□□ 1.87
SHKBP1-215ENST00000597649 PLEKHH2Q8IVE3 1493 aa26.68■■□□□ 1.86
SHKBP1-215ENST00000597649 ZNF335Q9H4Z2 1342 aaPredicted RBP26.68■■□□□ 1.86
SHKBP1-215ENST00000597649 PLXNC1O60486 1568 aa26.68■■□□□ 1.86
SHKBP1-215ENST00000597649 PTPRKQ15262 1439 aa26.68■■□□□ 1.86
SHKBP1-215ENST00000597649 IQSEC2Q5JU85 1478 aa26.67■■□□□ 1.86
SHKBP1-215ENST00000597649 INO80Q9ULG1 1556 aaPredicted RBP26.67■■□□□ 1.86
SHKBP1-215ENST00000597649 SOCS7O14512 581 aa26.66■■□□□ 1.86
SHKBP1-215ENST00000597649 MTUS2Q5JR59 1369 aa26.65■■□□□ 1.86
SHKBP1-215ENST00000597649 CLTCQ00610 1675 aaKnown RBP26.65■■□□□ 1.86
SHKBP1-215ENST00000597649 PKD2Q13563 968 aa26.62■■□□□ 1.85
SHKBP1-215ENST00000597649 MBD5Q9P267 1494 aa26.62■■□□□ 1.85
SHKBP1-215ENST00000597649 PPP6R1Q9UPN7 881 aa26.61■■□□□ 1.85
SHKBP1-215ENST00000597649 TCOF1Q13428 1488 aaKnown RBP26.59■■□□□ 1.85
SHKBP1-215ENST00000597649 PLA2R1Q13018 1463 aa26.58■■□□□ 1.85
SHKBP1-215ENST00000597649 UBAP1LF5GYI3 381 aa26.57■■□□□ 1.84
SHKBP1-215ENST00000597649 MYO3AQ8NEV4 1616 aa26.57■■□□□ 1.84
SHKBP1-215ENST00000597649 CEP170BQ9Y4F5 1589 aaPredicted RBP26.56■■□□□ 1.84
SHKBP1-215ENST00000597649 TIAM1Q13009 1591 aa26.55■■□□□ 1.84
SHKBP1-215ENST00000597649 DHX29Q7Z478 1369 aaKnown RBP26.55■■□□□ 1.84
SHKBP1-215ENST00000597649 SPATA31D1Q6ZQQ2 1576 aa26.54■■□□□ 1.84
SHKBP1-215ENST00000597649 ZNF142P52746 1687 aaPredicted RBP26.54■■□□□ 1.84
SHKBP1-215ENST00000597649 FBXO31Q5XUX0 539 aaPredicted RBP26.54■■□□□ 1.84
SHKBP1-215ENST00000597649 RTEL1-TNFRSF6BF6WH68 1400 aa26.53■■□□□ 1.84
SHKBP1-215ENST00000597649 ADGBQ8N7X0 1667 aa26.5■■□□□ 1.83
SHKBP1-215ENST00000597649 CEP162Q5TB80 1403 aa26.49■■□□□ 1.83
SHKBP1-215ENST00000597649 KIF3BO15066 747 aa26.49■■□□□ 1.83
SHKBP1-215ENST00000597649 A2ML1A8K2U0 1454 aa26.49■■□□□ 1.83
SHKBP1-215ENST00000597649 EHBP1L1Q8N3D4 1523 aa26.46■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms