RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 ZFYVE16Q7Z3T8 1539 aa14.81□□□□□ -0.04
SMAD4-215ENST00000592911 PLEKHD1A6NEE1 506 aa14.8□□□□□ -0.04
SMAD4-215ENST00000592911 FER1L4A9Z1Z3 1794 aa14.79□□□□□ -0.04
SMAD4-215ENST00000592911 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.78□□□□□ -0.04
SMAD4-215ENST00000592911 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.76□□□□□ -0.05
SMAD4-215ENST00000592911 HNRNPUL2Q1KMD3 747 aaKnown RBP14.76□□□□□ -0.05
SMAD4-215ENST00000592911 CSRNP3Q8WYN3 585 aa14.76□□□□□ -0.05
SMAD4-215ENST00000592911 PREX1Q8TCU6 1659 aa14.76□□□□□ -0.05
SMAD4-215ENST00000592911 NPM3O75607 178 aaKnown RBP14.75□□□□□ -0.05
SMAD4-215ENST00000592911 ARID3CA6NKF2 412 aa14.74□□□□□ -0.05
SMAD4-215ENST00000592911 P3H3Q8IVL6 736 aa14.74□□□□□ -0.05
SMAD4-215ENST00000592911 ARHGEF12Q9NZN5 1544 aa14.74□□□□□ -0.05
SMAD4-215ENST00000592911 CERKQ8TCT0 537 aa14.73□□□□□ -0.05
SMAD4-215ENST00000592911 HECW1Q76N89 1606 aa14.73□□□□□ -0.05
SMAD4-215ENST00000592911 PLCH2O75038 1416 aa14.71□□□□□ -0.05
SMAD4-215ENST00000592911 C9orf84Q5VXU9 1444 aa14.71□□□□□ -0.05
SMAD4-215ENST00000592911 ATP10AO60312 1499 aa14.7□□□□□ -0.06
SMAD4-215ENST00000592911 SIGLEC1Q9BZZ2 1709 aa14.7□□□□□ -0.06
SMAD4-215ENST00000592911 YEATS2Q9ULM3 1422 aa14.7□□□□□ -0.06
SMAD4-215ENST00000592911 MYO5CQ9NQX4 1742 aa14.69□□□□□ -0.06
SMAD4-215ENST00000592911 REREQ9P2R6 1566 aa14.69□□□□□ -0.06
SMAD4-215ENST00000592911 SCAPERQ9BY12 1400 aa14.67□□□□□ -0.06
SMAD4-215ENST00000592911 HSPA2P54652 639 aa14.67□□□□□ -0.06
SMAD4-215ENST00000592911 ZNF518AQ6AHZ1 1483 aa14.67□□□□□ -0.06
SMAD4-215ENST00000592911 IQSEC2Q5JU85 1478 aa14.66□□□□□ -0.06
SMAD4-215ENST00000592911 KDM5CP41229 1560 aa14.65□□□□□ -0.06
SMAD4-215ENST00000592911 STRCQ7RTU9 1775 aa14.65□□□□□ -0.06
SMAD4-215ENST00000592911 FMN1Q68DA7 1419 aa14.64□□□□□ -0.07
SMAD4-215ENST00000592911 EFCAB2Q5VUJ9 269 aa14.63□□□□□ -0.07
SMAD4-215ENST00000592911 CDK11AQ9UQ88 783 aaPredicted RBP14.63□□□□□ -0.07
SMAD4-215ENST00000592911 PTPRTO14522 1441 aa14.63□□□□□ -0.07
SMAD4-215ENST00000592911 UHRF1BP1Q6BDS2 1440 aa14.63□□□□□ -0.07
SMAD4-215ENST00000592911 KIF14Q15058 1648 aa14.61□□□□□ -0.07
SMAD4-215ENST00000592911 AGLP35573 1532 aa14.61□□□□□ -0.07
SMAD4-215ENST00000592911 RNF216Q9NWF9 866 aaPredicted RBP14.6□□□□□ -0.07
SMAD4-215ENST00000592911 SOCS7O14512 581 aa14.59□□□□□ -0.07
SMAD4-215ENST00000592911 CDK13Q14004 1512 aaKnown RBP14.59□□□□□ -0.07
SMAD4-215ENST00000592911 MLH3Q9UHC1 1453 aa14.58□□□□□ -0.08
SMAD4-215ENST00000592911 CNTLNQ9NXG0 1405 aa14.58□□□□□ -0.08
SMAD4-215ENST00000592911 CLIP1P30622 1438 aa14.57□□□□□ -0.08
SMAD4-215ENST00000592911 DIP2CQ9Y2E4 1556 aa14.56□□□□□ -0.08
SMAD4-215ENST00000592911 TROQ12816 1431 aaPredicted RBP14.56□□□□□ -0.08
SMAD4-215ENST00000592911 C3P01024 1663 aa14.55□□□□□ -0.08
SMAD4-215ENST00000592911 HOXD11P31277 338 aaPredicted RBP14.55□□□□□ -0.08
SMAD4-215ENST00000592911 MLECQ14165 292 aa14.55□□□□□ -0.08
SMAD4-215ENST00000592911 DISP3Q9P2K9 1392 aa14.55□□□□□ -0.08
SMAD4-215ENST00000592911 TRAPPC8Q9Y2L5 1435 aa14.54□□□□□ -0.08
SMAD4-215ENST00000592911 ARHGAP5Q13017 1502 aa14.54□□□□□ -0.08
SMAD4-215ENST00000592911 SPATA31D1Q6ZQQ2 1576 aa14.54□□□□□ -0.08
SMAD4-215ENST00000592911 MROH2AA6NES4 1674 aa14.54□□□□□ -0.08
SMAD4-215ENST00000592911 CDC42BPBQ9Y5S2 1711 aa14.52□□□□□ -0.09
SMAD4-215ENST00000592911 NPATQ14207 1427 aa14.51□□□□□ -0.09
SMAD4-215ENST00000592911 PREX2Q70Z35 1606 aa14.51□□□□□ -0.09
SMAD4-215ENST00000592911 ABCA6Q8N139 1617 aa14.51□□□□□ -0.09
SMAD4-215ENST00000592911 LTBP4Q8N2S1 1624 aa14.51□□□□□ -0.09
SMAD4-215ENST00000592911 NCOA1Q15788 1441 aa14.5□□□□□ -0.09
SMAD4-215ENST00000592911 ABCC1P33527 1531 aa14.5□□□□□ -0.09
SMAD4-215ENST00000592911 ITSN2Q9NZM3 1697 aa14.49□□□□□ -0.09
SMAD4-215ENST00000592911 ESF1Q9H501 851 aaKnown RBP14.49□□□□□ -0.09
SMAD4-215ENST00000592911 CCDC18Q5T9S5 1454 aa14.48□□□□□ -0.09
SMAD4-215ENST00000592911 ARHGAP35Q9NRY4 1499 aa14.47□□□□□ -0.09
SMAD4-215ENST00000592911 CEBPAP49715 358 aaPredicted RBP14.47□□□□□ -0.09
SMAD4-215ENST00000592911 KIDINS220Q9ULH0 1771 aa14.47□□□□□ -0.09
SMAD4-215ENST00000592911 RANGAP1P46060 587 aaPredicted RBP14.46□□□□□ -0.09
SMAD4-215ENST00000592911 AFAP1Q8N556 730 aa14.46□□□□□ -0.09
SMAD4-215ENST00000592911 PLA2R1Q13018 1463 aa14.45□□□□□ -0.1
SMAD4-215ENST00000592911 ILDR2Q71H61 639 aa14.45□□□□□ -0.1
SMAD4-215ENST00000592911 ZNF142P52746 1687 aaPredicted RBP14.45□□□□□ -0.1
SMAD4-215ENST00000592911 LRRIQ1Q96JM4 1722 aa14.44□□□□□ -0.1
SMAD4-215ENST00000592911 CDC42BPAQ5VT25 1732 aa14.42□□□□□ -0.1
SMAD4-215ENST00000592911 POTEDQ86YR6 584 aa14.42□□□□□ -0.1
SMAD4-215ENST00000592911 CAMSAP1Q5T5Y3 1602 aa14.41□□□□□ -0.1
SMAD4-215ENST00000592911 PKD2Q13563 968 aa14.41□□□□□ -0.1
SMAD4-215ENST00000592911 MYT1LQ9UL68 1186 aa14.41□□□□□ -0.1
SMAD4-215ENST00000592911 CASKIN1Q8WXD9 1431 aa14.4□□□□□ -0.1
SMAD4-215ENST00000592911 SAMD9LQ8IVG5 1584 aa14.39□□□□□ -0.11
SMAD4-215ENST00000592911 PLEKHH2Q8IVE3 1493 aa14.39□□□□□ -0.11
SMAD4-215ENST00000592911 SUPT6HQ7KZ85 1726 aaKnown RBP14.38□□□□□ -0.11
SMAD4-215ENST00000592911 UBTFP17480 764 aaKnown RBP14.38□□□□□ -0.11
SMAD4-215ENST00000592911 KIAA1107Q9UPP5 1409 aa14.38□□□□□ -0.11
SMAD4-215ENST00000592911 PLXNC1O60486 1568 aa14.38□□□□□ -0.11
SMAD4-215ENST00000592911 TCOF1Q13428 1488 aaKnown RBP14.38□□□□□ -0.11
SMAD4-215ENST00000592911 ATP1B4Q9UN42 357 aaPredicted RBP14.37□□□□□ -0.11
SMAD4-215ENST00000592911 MYO3AQ8NEV4 1616 aa14.37□□□□□ -0.11
SMAD4-215ENST00000592911 ZMYM3Q14202 1370 aa14.36□□□□□ -0.11
SMAD4-215ENST00000592911 FAM135AQ9P2D6 1515 aa14.36□□□□□ -0.11
SMAD4-215ENST00000592911 CEP170BQ9Y4F5 1589 aaPredicted RBP14.35□□□□□ -0.11
SMAD4-215ENST00000592911 FYCO1Q9BQS8 1478 aa14.35□□□□□ -0.11
SMAD4-215ENST00000592911 INO80Q9ULG1 1556 aaPredicted RBP14.34□□□□□ -0.11
SMAD4-215ENST00000592911 ATP7AQ04656 1500 aa14.34□□□□□ -0.11
SMAD4-215ENST00000592911 ADGBQ8N7X0 1667 aa14.33□□□□□ -0.11
SMAD4-215ENST00000592911 SPAG9O60271 1321 aaKnown RBP14.32□□□□□ -0.12
SMAD4-215ENST00000592911 CLTCQ00610 1675 aaKnown RBP14.32□□□□□ -0.12
SMAD4-215ENST00000592911 PTPRKQ15262 1439 aa14.32□□□□□ -0.12
SMAD4-215ENST00000592911 SYCP2Q9BX26 1530 aa14.31□□□□□ -0.12
SMAD4-215ENST00000592911 SLC4A1APQ9BWU0 796 aaKnown RBP14.31□□□□□ -0.12
SMAD4-215ENST00000592911 A2MP01023 1474 aa14.31□□□□□ -0.12
SMAD4-215ENST00000592911 CPS1P31327 1500 aa14.31□□□□□ -0.12
SMAD4-215ENST00000592911 GPATCH8Q9UKJ3 1502 aaKnown RBP14.3□□□□□ -0.12
SMAD4-215ENST00000592911 A2ML1A8K2U0 1454 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms