RNA–Protein interactions for RNA: ENST00000589351.5

DNMT1-220, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 672 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-220ENST00000589351 DOK7Q18PE1 504 aa11.23□□□□□ -0.61
DNMT1-220ENST00000589351 EFCAB3Q8N7B9 438 aa11.23□□□□□ -0.61
DNMT1-220ENST00000589351 ERBB3P21860 1342 aa11.23□□□□□ -0.61
DNMT1-220ENST00000589351 VARS2Q5ST30 1063 aaKnown RBP11.16□□□□□ -0.62
DNMT1-220ENST00000589351 TMEM92Q6UXU6 159 aa11.16□□□□□ -0.62
DNMT1-220ENST00000589351 RIMBP2O15034 1052 aa11.15□□□□□ -0.62
DNMT1-220ENST00000589351 MICALL2Q8IY33 904 aa11.14□□□□□ -0.63
DNMT1-220ENST00000589351 RNF166Q96A37 237 aaPredicted RBP11.13□□□□□ -0.63
DNMT1-220ENST00000589351 TRIM41Q8WV44 630 aa11.1□□□□□ -0.63
DNMT1-220ENST00000589351 GPR153Q6NV75 609 aa11.08□□□□□ -0.64
DNMT1-220ENST00000589351 ZNF687Q8N1G0 1237 aa11.08□□□□□ -0.64
DNMT1-220ENST00000589351 MS4A4AQ96JQ5 239 aa11.08□□□□□ -0.64
DNMT1-220ENST00000589351 ZSWIM6Q9HCJ5 1215 aa11.08□□□□□ -0.64
DNMT1-220ENST00000589351 MYT1LQ9UL68 1186 aa11.08□□□□□ -0.64
DNMT1-220ENST00000589351 SOX12O15370 315 aa11.06□□□□□ -0.64
DNMT1-220ENST00000589351 RNF25Q96BH1 459 aaPredicted RBP11.03□□□□□ -0.64
DNMT1-220ENST00000589351 DNAJC5Q9H3Z4 198 aa11.03□□□□□ -0.64
DNMT1-220ENST00000589351 PHF8Q9UPP1 1060 aa11.03□□□□□ -0.64
DNMT1-220ENST00000589351 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.02□□□□□ -0.65
DNMT1-220ENST00000589351 ZFP91Q96JP5 570 aaPredicted RBP11.02□□□□□ -0.65
DNMT1-220ENST00000589351 RIOK3O14730 519 aaKnown RBP11.01□□□□□ -0.65
DNMT1-220ENST00000589351 ARSIQ5FYB1 569 aa11.01□□□□□ -0.65
DNMT1-220ENST00000589351 KHSRPQ92945 711 aaKnown RBP eCLIP10.97□□□□□ -0.65
DNMT1-220ENST00000589351 VGFO15240 615 aaPredicted RBP10.96□□□□□ -0.65
DNMT1-220ENST00000589351 ANKRD13DQ6ZTN6 518 aa10.96□□□□□ -0.65
DNMT1-220ENST00000589351 ZNF316A6NFI3 1004 aaPredicted RBP10.94□□□□□ -0.66
DNMT1-220ENST00000589351 PTGER2P43116 358 aa10.94□□□□□ -0.66
DNMT1-220ENST00000589351 FBXO22Q8NEZ5 403 aa10.9□□□□□ -0.66
DNMT1-220ENST00000589351 NLRP6P59044 892 aa10.89□□□□□ -0.67
DNMT1-220ENST00000589351 LSM11P83369 360 aaKnown RBP eCLIP10.89□□□□□ -0.67
DNMT1-220ENST00000589351 NCAPD3P42695 1498 aa10.88□□□□□ -0.67
DNMT1-220ENST00000589351 CUX2O14529 1486 aa10.87□□□□□ -0.67
DNMT1-220ENST00000589351 ERCC6Q03468 1493 aa10.87□□□□□ -0.67
DNMT1-220ENST00000589351 BCL11BQ9C0K0 894 aaPredicted RBP10.85□□□□□ -0.67
DNMT1-220ENST00000589351 C2orf72A6NCS6 295 aa10.83□□□□□ -0.68
DNMT1-220ENST00000589351 KIF3CO14782 793 aa10.83□□□□□ -0.68
DNMT1-220ENST00000589351 NUDT7P0C024 238 aa10.83□□□□□ -0.68
DNMT1-220ENST00000589351 POTEEQ6S8J3 1075 aa10.82□□□□□ -0.68
DNMT1-220ENST00000589351 MFRPQ9BY79 579 aa10.82□□□□□ -0.68
DNMT1-220ENST00000589351 STK24Q9Y6E0 443 aa10.81□□□□□ -0.68
DNMT1-220ENST00000589351 SMARCA2P51531 1590 aa10.81□□□□□ -0.68
DNMT1-220ENST00000589351 ATAD2BQ9ULI0 1458 aa10.81□□□□□ -0.68
DNMT1-220ENST00000589351 LHX6Q9UPM6 363 aa10.8□□□□□ -0.68
DNMT1-220ENST00000589351 AXIN2Q9Y2T1 843 aa10.8□□□□□ -0.68
DNMT1-220ENST00000589351 PBX2P40425 430 aa10.79□□□□□ -0.68
DNMT1-220ENST00000589351 PCDHGA4Q9Y5G9 962 aa10.77□□□□□ -0.69
DNMT1-220ENST00000589351 HMGXB3Q12766 1538 aa10.76□□□□□ -0.69
DNMT1-220ENST00000589351 TAOK2Q9UL54 1235 aa10.75□□□□□ -0.69
DNMT1-220ENST00000589351 SMARCA4P51532 1647 aa10.75□□□□□ -0.69
DNMT1-220ENST00000589351 SLC34A2O95436 690 aa10.74□□□□□ -0.69
DNMT1-220ENST00000589351 STK25O00506 426 aa10.73□□□□□ -0.69
DNMT1-220ENST00000589351 BAZ1BQ9UIG0 1483 aaKnown RBP10.73□□□□□ -0.69
DNMT1-220ENST00000589351 PLA2G2EQ9NZK7 142 aa10.72□□□□□ -0.69
DNMT1-220ENST00000589351 BAZ1AQ9NRL2 1556 aaPredicted RBP10.72□□□□□ -0.69
DNMT1-220ENST00000589351 TMC2Q8TDI7 906 aa10.69□□□□□ -0.7
DNMT1-220ENST00000589351 HCSTQ9UBK5 93 aa10.69□□□□□ -0.7
DNMT1-220ENST00000589351 NESP48681 1621 aa10.69□□□□□ -0.7
DNMT1-220ENST00000589351 ADGRD1Q6QNK2 874 aa10.68□□□□□ -0.7
DNMT1-220ENST00000589351 LAMC3Q9Y6N6 1575 aa10.66□□□□□ -0.7
DNMT1-220ENST00000589351 ARHGAP33O14559 1287 aa10.66□□□□□ -0.7
DNMT1-220ENST00000589351 PDS5BQ9NTI5 1447 aa10.65□□□□□ -0.7
DNMT1-220ENST00000589351 PEG3Q9GZU2 1588 aa10.65□□□□□ -0.71
DNMT1-220ENST00000589351 KDM4FA0A1W2PPD8 638 aa10.63□□□□□ -0.71
DNMT1-220ENST00000589351 PPP1R37O75864 691 aa10.63□□□□□ -0.71
DNMT1-220ENST00000589351 ECM2O94769 699 aaPredicted RBP10.62□□□□□ -0.71
DNMT1-220ENST00000589351 DMRTA1Q5VZB9 504 aa10.61□□□□□ -0.71
DNMT1-220ENST00000589351 PSDA5PKW4 1024 aaPredicted RBP10.6□□□□□ -0.71
DNMT1-220ENST00000589351 PSEN2P49810 448 aa10.6□□□□□ -0.71
DNMT1-220ENST00000589351 HRO43593 1189 aa10.59□□□□□ -0.71
DNMT1-220ENST00000589351 THOC2Q8NI27 1593 aaKnown RBP10.59□□□□□ -0.71
DNMT1-220ENST00000589351 MROH2BQ7Z745 1585 aa10.58□□□□□ -0.72
DNMT1-220ENST00000589351 TK2O00142 265 aa10.58□□□□□ -0.72
DNMT1-220ENST00000589351 RGL2O15211 777 aa10.58□□□□□ -0.72
DNMT1-220ENST00000589351 PTCD2Q8WV60 388 aaKnown RBP10.58□□□□□ -0.72
DNMT1-220ENST00000589351 CADPSQ9ULU8 1353 aa10.56□□□□□ -0.72
DNMT1-220ENST00000589351 KIF21AQ7Z4S6 1674 aa10.55□□□□□ -0.72
DNMT1-220ENST00000589351 KCTD12Q96CX2 325 aaKnown RBP10.54□□□□□ -0.72
DNMT1-220ENST00000589351 PKD2Q13563 968 aa10.53□□□□□ -0.72
DNMT1-220ENST00000589351 FOXK1P85037 733 aa10.52□□□□□ -0.73
DNMT1-220ENST00000589351 PLPP6Q8IY26 295 aa10.52□□□□□ -0.73
DNMT1-220ENST00000589351 PPP4R3BQ5MIZ7 849 aa10.51□□□□□ -0.73
DNMT1-220ENST00000589351 MRC2Q9UBG0 1479 aa10.5□□□□□ -0.73
DNMT1-220ENST00000589351 SLC24A1O60721 1099 aa10.48□□□□□ -0.73
DNMT1-220ENST00000589351 STAC3Q96MF2 364 aa10.48□□□□□ -0.73
DNMT1-220ENST00000589351 GPHNQ9NQX3 736 aaPredicted RBP10.48□□□□□ -0.73
DNMT1-220ENST00000589351 DSG2Q14126 1118 aa10.47□□□□□ -0.73
DNMT1-220ENST00000589351 KCNK17Q96T54 332 aa10.47□□□□□ -0.73
DNMT1-220ENST00000589351 CEP164Q9UPV0 1460 aa10.46□□□□□ -0.74
DNMT1-220ENST00000589351 TBC1D12O60347 775 aa10.45□□□□□ -0.74
DNMT1-220ENST00000589351 WIZO95785 1651 aa10.44□□□□□ -0.74
DNMT1-220ENST00000589351 WDR62O43379 1518 aa10.44□□□□□ -0.74
DNMT1-220ENST00000589351 VPS9D1Q9Y2B5 631 aa10.44□□□□□ -0.74
DNMT1-220ENST00000589351 PTPN5P54829 565 aa10.43□□□□□ -0.74
DNMT1-220ENST00000589351 FANCD2Q9BXW9 1451 aa10.42□□□□□ -0.74
DNMT1-220ENST00000589351 KCNH8Q96L42 1107 aa10.4□□□□□ -0.74
DNMT1-220ENST00000589351 CFTRP13569 1480 aa10.38□□□□□ -0.75
DNMT1-220ENST00000589351 ZNF454Q8N9F8 522 aa10.37□□□□□ -0.75
DNMT1-220ENST00000589351 OXER1Q8TDS5 423 aa10.37□□□□□ -0.75
DNMT1-220ENST00000589351 UPF1Q92900 1129 aaKnown RBP eCLIP10.36□□□□□ -0.75
DNMT1-220ENST00000589351 RSF1Q96T23 1441 aaPredicted RBP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms