RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 HNRNPMP52272 730 aaKnown RBP eCLIP18.8■□□□□ 0.64e-8■■□□□ 12.7
CDK5RAP3-217ENST00000580287 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.79■□□□□ 0.63e-9■■□□□ 12.3
CDK5RAP3-217ENST00000580287 ASXL2Q76L83 1435 aa18.79■□□□□ 0.6
CDK5RAP3-217ENST00000580287 TTC37Q6PGP7 1564 aa18.78■□□□□ 0.6
CDK5RAP3-217ENST00000580287 CAMSAP2Q08AD1 1489 aa18.77■□□□□ 0.59
CDK5RAP3-217ENST00000580287 SETD5Q9C0A6 1442 aa18.76■□□□□ 0.59
CDK5RAP3-217ENST00000580287 WDR7Q9Y4E6 1490 aa18.75■□□□□ 0.59
CDK5RAP3-217ENST00000580287 ABCC5O15440 1437 aa18.75■□□□□ 0.59
CDK5RAP3-217ENST00000580287 CDC42BPAQ5VT25 1732 aa18.75■□□□□ 0.59
CDK5RAP3-217ENST00000580287 DAPK1P53355 1430 aa18.73■□□□□ 0.59
CDK5RAP3-217ENST00000580287 SCAF1Q9H7N4 1312 aaKnown RBP18.71■□□□□ 0.59
CDK5RAP3-217ENST00000580287 ARHGAP5Q13017 1502 aa18.7■□□□□ 0.58
CDK5RAP3-217ENST00000580287 ITSN2Q9NZM3 1697 aa18.69■□□□□ 0.58
CDK5RAP3-217ENST00000580287 NAIPQ13075 1403 aa18.69■□□□□ 0.58
CDK5RAP3-217ENST00000580287 DHX57Q6P158 1386 aaKnown RBP18.69■□□□□ 0.58
CDK5RAP3-217ENST00000580287 CDC42BPBQ9Y5S2 1711 aa18.68■□□□□ 0.58
CDK5RAP3-217ENST00000580287 PLCH2O75038 1416 aa18.67■□□□□ 0.58
CDK5RAP3-217ENST00000580287 HFM1A2PYH4 1435 aa18.67■□□□□ 0.58
CDK5RAP3-217ENST00000580287 EFCAB2Q5VUJ9 269 aa18.67■□□□□ 0.58
CDK5RAP3-217ENST00000580287 SAMD9LQ8IVG5 1584 aa18.65■□□□□ 0.58
CDK5RAP3-217ENST00000580287 PREX2Q70Z35 1606 aa18.64■□□□□ 0.58
CDK5RAP3-217ENST00000580287 TSPY4P0CV99 314 aa18.64■□□□□ 0.57
CDK5RAP3-217ENST00000580287 TSPY10P0CW01 314 aa18.64■□□□□ 0.57
CDK5RAP3-217ENST00000580287 MBD5Q9P267 1494 aa18.64■□□□□ 0.57
CDK5RAP3-217ENST00000580287 DNMT1P26358 1616 aaKnown RBP18.64■□□□□ 0.57
CDK5RAP3-217ENST00000580287 AKNAQ7Z591 1439 aa18.62■□□□□ 0.57
CDK5RAP3-217ENST00000580287 ARHGEF12Q9NZN5 1544 aa18.62■□□□□ 0.57
CDK5RAP3-217ENST00000580287 AFAP1Q8N556 730 aa18.61■□□□□ 0.57
CDK5RAP3-217ENST00000580287 SYCP2Q9BX26 1530 aa18.61■□□□□ 0.57
CDK5RAP3-217ENST00000580287 TRIM52Q96A61 297 aa18.61■□□□□ 0.57
CDK5RAP3-217ENST00000580287 KDM6BO15054 1643 aa18.6■□□□□ 0.57
CDK5RAP3-217ENST00000580287 MYO5CQ9NQX4 1742 aa18.6■□□□□ 0.57
CDK5RAP3-217ENST00000580287 NCOA1Q15788 1441 aa18.6■□□□□ 0.57
CDK5RAP3-217ENST00000580287 C9orf84Q5VXU9 1444 aa18.58■□□□□ 0.56
CDK5RAP3-217ENST00000580287 CD109Q6YHK3 1445 aa18.57■□□□□ 0.56
CDK5RAP3-217ENST00000580287 FAM69CQ0P6D2 419 aa18.57■□□□□ 0.56
CDK5RAP3-217ENST00000580287 DIEXFQ68CQ4 756 aaKnown RBP18.57■□□□□ 0.56
CDK5RAP3-217ENST00000580287 FANCAO15360 1455 aa18.57■□□□□ 0.56
CDK5RAP3-217ENST00000580287 TRAPPC8Q9Y2L5 1435 aa18.57■□□□□ 0.56
CDK5RAP3-217ENST00000580287 ROCK1Q13464 1354 aa18.57■□□□□ 0.56
CDK5RAP3-217ENST00000580287 PLPPR3Q6T4P5 718 aa18.56■□□□□ 0.56
CDK5RAP3-217ENST00000580287 ABCA9Q8IUA7 1624 aa18.55■□□□□ 0.56
CDK5RAP3-217ENST00000580287 ANKRD30AQ9BXX3 1397 aa18.54■□□□□ 0.56
CDK5RAP3-217ENST00000580287 CCDC141Q6ZP82 1450 aa18.54■□□□□ 0.56
CDK5RAP3-217ENST00000580287 SIN3AQ96ST3 1273 aa18.53■□□□□ 0.56
CDK5RAP3-217ENST00000580287 FOXD1Q16676 465 aa18.53■□□□□ 0.56
CDK5RAP3-217ENST00000580287 RSPH4AQ5TD94 716 aa18.53■□□□□ 0.56
CDK5RAP3-217ENST00000580287 KIAA1107Q9UPP5 1409 aa18.52■□□□□ 0.56
CDK5RAP3-217ENST00000580287 NEUROD1Q13562 356 aa18.51■□□□□ 0.55
CDK5RAP3-217ENST00000580287 MYT1LQ9UL68 1186 aa18.51■□□□□ 0.55
CDK5RAP3-217ENST00000580287 MAPKBP1O60336 1514 aa18.51■□□□□ 0.55
CDK5RAP3-217ENST00000580287 SCAPERQ9BY12 1400 aa18.51■□□□□ 0.55
CDK5RAP3-217ENST00000580287 KIF15Q9NS87 1388 aa18.51■□□□□ 0.55
CDK5RAP3-217ENST00000580287 ARHGEF5Q12774 1597 aa18.49■□□□□ 0.55
CDK5RAP3-217ENST00000580287 ABCC1P33527 1531 aa18.49■□□□□ 0.55
CDK5RAP3-217ENST00000580287 ADGRL2O95490 1459 aa18.49■□□□□ 0.55
CDK5RAP3-217ENST00000580287 ADGRL1O94910 1474 aa18.48■□□□□ 0.55
CDK5RAP3-217ENST00000580287 PLEKHH2Q8IVE3 1493 aa18.48■□□□□ 0.55
CDK5RAP3-217ENST00000580287 CROCC2H7BZ55 1655 aa18.48■□□□□ 0.55
CDK5RAP3-217ENST00000580287 ANKRD50Q9ULJ7 1429 aa18.48■□□□□ 0.55
CDK5RAP3-217ENST00000580287 RAPGEF3O95398 923 aa18.47■□□□□ 0.55
CDK5RAP3-217ENST00000580287 SPAG9O60271 1321 aaKnown RBP18.47■□□□□ 0.55
CDK5RAP3-217ENST00000580287 MPHOSPH9Q99550 1183 aa18.47■□□□□ 0.55
CDK5RAP3-217ENST00000580287 SHANK2Q9UPX8 1470 aa18.47■□□□□ 0.55
CDK5RAP3-217ENST00000580287 GCC2Q8IWJ2 1684 aa18.46■□□□□ 0.55
CDK5RAP3-217ENST00000580287 ARAP3Q8WWN8 1544 aa18.45■□□□□ 0.54
CDK5RAP3-217ENST00000580287 SLC4A1APQ9BWU0 796 aaKnown RBP18.44■□□□□ 0.54
CDK5RAP3-217ENST00000580287 CLSPNQ9HAW4 1339 aa18.43■□□□□ 0.54
CDK5RAP3-217ENST00000580287 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.43■□□□□ 0.542e-7■■□□□ 13.2
CDK5RAP3-217ENST00000580287 DENND4BO75064 1496 aaPredicted RBP18.42■□□□□ 0.54
CDK5RAP3-217ENST00000580287 ADGBQ8N7X0 1667 aa18.41■□□□□ 0.54
CDK5RAP3-217ENST00000580287 ZNF316A6NFI3 1004 aaPredicted RBP18.4■□□□□ 0.54
CDK5RAP3-217ENST00000580287 NUP155O75694 1391 aa18.39■□□□□ 0.53
CDK5RAP3-217ENST00000580287 DIP2BQ9P265 1576 aa18.39■□□□□ 0.53
CDK5RAP3-217ENST00000580287 DNAJC5Q9H3Z4 198 aa18.38■□□□□ 0.53
CDK5RAP3-217ENST00000580287 DAXXQ9UER7 740 aaPredicted RBP18.37■□□□□ 0.53
CDK5RAP3-217ENST00000580287 PKD2Q13563 968 aa18.35■□□□□ 0.53
CDK5RAP3-217ENST00000580287 MAST1Q9Y2H9 1570 aa18.34■□□□□ 0.53
CDK5RAP3-217ENST00000580287 MAP3K4Q9Y6R4 1608 aa18.34■□□□□ 0.53
CDK5RAP3-217ENST00000580287 TSPOAP1O95153 1857 aa18.34■□□□□ 0.53
CDK5RAP3-217ENST00000580287 PZPP20742 1482 aa18.34■□□□□ 0.53
CDK5RAP3-217ENST00000580287 GLI2P10070 1586 aa18.33■□□□□ 0.53
CDK5RAP3-217ENST00000580287 YTHDC1Q96MU7 727 aaKnown RBP18.33■□□□□ 0.53
CDK5RAP3-217ENST00000580287 ACIN1Q9UKV3 1341 aaKnown RBP18.33■□□□□ 0.53
CDK5RAP3-217ENST00000580287 ZFYVE16Q7Z3T8 1539 aa18.33■□□□□ 0.52
CDK5RAP3-217ENST00000580287 POGZQ7Z3K3 1410 aa18.32■□□□□ 0.52
CDK5RAP3-217ENST00000580287 ZNF518AQ6AHZ1 1483 aa18.31■□□□□ 0.52
CDK5RAP3-217ENST00000580287 NEO1Q92859 1461 aa18.31■□□□□ 0.52
CDK5RAP3-217ENST00000580287 RTEL1-TNFRSF6BF6WH68 1400 aa18.31■□□□□ 0.52
CDK5RAP3-217ENST00000580287 KIF3BO15066 747 aa18.31■□□□□ 0.52
CDK5RAP3-217ENST00000580287 TRHP20396 242 aaPredicted RBP18.31■□□□□ 0.52
CDK5RAP3-217ENST00000580287 ATP7AQ04656 1500 aa18.3■□□□□ 0.52
CDK5RAP3-217ENST00000580287 DUOX2Q9NRD8 1548 aa18.28■□□□□ 0.52
CDK5RAP3-217ENST00000580287 PLXNC1O60486 1568 aa18.28■□□□□ 0.52
CDK5RAP3-217ENST00000580287 ANKRD30BQ9BXX2 1392 aa18.26■□□□□ 0.51
CDK5RAP3-217ENST00000580287 MIER1Q8N108 512 aa18.25■□□□□ 0.51
CDK5RAP3-217ENST00000580287 RTN4Q9NQC3 1192 aaKnown RBP18.25■□□□□ 0.51
CDK5RAP3-217ENST00000580287 INO80Q9ULG1 1556 aaPredicted RBP18.25■□□□□ 0.51
CDK5RAP3-217ENST00000580287 CFAP74Q9C0B2 1584 aa18.25■□□□□ 0.51
CDK5RAP3-217ENST00000580287 DHX29Q7Z478 1369 aaKnown RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms