RNA–Protein interactions for RNA: ENST00000575663.5

SMG6-219, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 574 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-219ENST00000575663 C9orf84Q5VXU9 1444 aa10.11□□□□□ -0.79
SMG6-219ENST00000575663 PLEKHD1A6NEE1 506 aa10.11□□□□□ -0.79
SMG6-219ENST00000575663 ARHGEF12Q9NZN5 1544 aa10.11□□□□□ -0.79
SMG6-219ENST00000575663 IQSEC2Q5JU85 1478 aa10.1□□□□□ -0.79
SMG6-219ENST00000575663 HECW1Q76N89 1606 aa10.09□□□□□ -0.79
SMG6-219ENST00000575663 PTPRTO14522 1441 aa10.08□□□□□ -0.8
SMG6-219ENST00000575663 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.08□□□□□ -0.8
SMG6-219ENST00000575663 ATP10AO60312 1499 aa10.08□□□□□ -0.8
SMG6-219ENST00000575663 SIGLEC1Q9BZZ2 1709 aa10.07□□□□□ -0.8
SMG6-219ENST00000575663 SCAPERQ9BY12 1400 aa10.07□□□□□ -0.8
SMG6-219ENST00000575663 CEBPAP49715 358 aaPredicted RBP10.05□□□□□ -0.8
SMG6-219ENST00000575663 STRCQ7RTU9 1775 aa10.04□□□□□ -0.8
SMG6-219ENST00000575663 PLCH2O75038 1416 aa10.04□□□□□ -0.8
SMG6-219ENST00000575663 ZNF518AQ6AHZ1 1483 aa10.04□□□□□ -0.8
SMG6-219ENST00000575663 LTBP4Q8N2S1 1624 aa10.03□□□□□ -0.8
SMG6-219ENST00000575663 ESF1Q9H501 851 aaKnown RBP10.02□□□□□ -0.81
SMG6-219ENST00000575663 NCOA1Q15788 1441 aa10□□□□□ -0.81
SMG6-219ENST00000575663 EFCAB2Q5VUJ9 269 aa10□□□□□ -0.81
SMG6-219ENST00000575663 MYT1LQ9UL68 1186 aa10□□□□□ -0.81
SMG6-219ENST00000575663 TRAPPC8Q9Y2L5 1435 aa9.99□□□□□ -0.81
SMG6-219ENST00000575663 RANGAP1P46060 587 aaPredicted RBP9.99□□□□□ -0.81
SMG6-219ENST00000575663 KDM5CP41229 1560 aa9.98□□□□□ -0.81
SMG6-219ENST00000575663 REREQ9P2R6 1566 aa9.98□□□□□ -0.81
SMG6-219ENST00000575663 CNTLNQ9NXG0 1405 aa9.98□□□□□ -0.81
SMG6-219ENST00000575663 CDK13Q14004 1512 aaKnown RBP9.97□□□□□ -0.81
SMG6-219ENST00000575663 UBAP1LF5GYI3 381 aa9.97□□□□□ -0.81
SMG6-219ENST00000575663 AGLP35573 1532 aa9.97□□□□□ -0.81
SMG6-219ENST00000575663 DIP2CQ9Y2E4 1556 aa9.97□□□□□ -0.81
SMG6-219ENST00000575663 CSRNP3Q8WYN3 585 aa9.96□□□□□ -0.82
SMG6-219ENST00000575663 CDK11AQ9UQ88 783 aaPredicted RBP9.96□□□□□ -0.82
SMG6-219ENST00000575663 ARHGAP5Q13017 1502 aa9.96□□□□□ -0.82
SMG6-219ENST00000575663 C3P01024 1663 aa9.96□□□□□ -0.82
SMG6-219ENST00000575663 MYO5CQ9NQX4 1742 aa9.95□□□□□ -0.82
SMG6-219ENST00000575663 KIF14Q15058 1648 aa9.94□□□□□ -0.82
SMG6-219ENST00000575663 CAMSAP1Q5T5Y3 1602 aa9.94□□□□□ -0.82
SMG6-219ENST00000575663 MLH3Q9UHC1 1453 aa9.94□□□□□ -0.82
SMG6-219ENST00000575663 CLIP1P30622 1438 aa9.94□□□□□ -0.82
SMG6-219ENST00000575663 NPATQ14207 1427 aa9.94□□□□□ -0.82
SMG6-219ENST00000575663 AFAP1Q8N556 730 aa9.94□□□□□ -0.82
SMG6-219ENST00000575663 ZNF335Q9H4Z2 1342 aaPredicted RBP9.93□□□□□ -0.82
SMG6-219ENST00000575663 SETD1BQ9UPS6 1966 aaKnown RBP9.93□□□□□ -0.82
SMG6-219ENST00000575663 ABCA6Q8N139 1617 aa9.93□□□□□ -0.82
SMG6-219ENST00000575663 MED1Q15648 1581 aaPredicted RBP9.92□□□□□ -0.82
SMG6-219ENST00000575663 EEA1Q15075 1411 aa9.92□□□□□ -0.82
SMG6-219ENST00000575663 PLA2R1Q13018 1463 aa9.91□□□□□ -0.82
SMG6-219ENST00000575663 FMN1Q68DA7 1419 aa9.91□□□□□ -0.82
SMG6-219ENST00000575663 SCAF1Q9H7N4 1312 aaKnown RBP9.91□□□□□ -0.82
SMG6-219ENST00000575663 PKD2Q13563 968 aa9.91□□□□□ -0.82
SMG6-219ENST00000575663 ATP1B4Q9UN42 357 aaPredicted RBP9.91□□□□□ -0.82
SMG6-219ENST00000575663 PHF23Q9BUL5 403 aaPredicted RBP9.9□□□□□ -0.82
SMG6-219ENST00000575663 TROQ12816 1431 aaPredicted RBP9.9□□□□□ -0.83
SMG6-219ENST00000575663 NCKAP5LQ9HCH0 1330 aa9.89□□□□□ -0.83
SMG6-219ENST00000575663 ABCC1P33527 1531 aa9.88□□□□□ -0.83
SMG6-219ENST00000575663 MROH2AA6NES4 1674 aa9.88□□□□□ -0.83
SMG6-219ENST00000575663 PPP6R1Q9UPN7 881 aa9.88□□□□□ -0.83
SMG6-219ENST00000575663 TCOF1Q13428 1488 aaKnown RBP9.87□□□□□ -0.83
SMG6-219ENST00000575663 TOM1O60784 492 aa9.87□□□□□ -0.83
SMG6-219ENST00000575663 HSPA1LP34931 641 aa9.87□□□□□ -0.83
SMG6-219ENST00000575663 PIP4K2BP78356 416 aa9.87□□□□□ -0.83
SMG6-219ENST00000575663 ZMYM3Q14202 1370 aa9.87□□□□□ -0.83
SMG6-219ENST00000575663 ZNF142P52746 1687 aaPredicted RBP9.87□□□□□ -0.83
SMG6-219ENST00000575663 MYO3AQ8NEV4 1616 aa9.86□□□□□ -0.83
SMG6-219ENST00000575663 CEP170BQ9Y4F5 1589 aaPredicted RBP9.86□□□□□ -0.83
SMG6-219ENST00000575663 CPS1P31327 1500 aa9.86□□□□□ -0.83
SMG6-219ENST00000575663 PREX2Q70Z35 1606 aa9.84□□□□□ -0.83
SMG6-219ENST00000575663 ITSN2Q9NZM3 1697 aa9.83□□□□□ -0.84
SMG6-219ENST00000575663 PTPRKQ15262 1439 aa9.82□□□□□ -0.84
SMG6-219ENST00000575663 KIDINS220Q9ULH0 1771 aa9.82□□□□□ -0.84
SMG6-219ENST00000575663 SPAG9O60271 1321 aaKnown RBP9.81□□□□□ -0.84
SMG6-219ENST00000575663 SAMD9LQ8IVG5 1584 aa9.8□□□□□ -0.84
SMG6-219ENST00000575663 A2ML1A8K2U0 1454 aa9.8□□□□□ -0.84
SMG6-219ENST00000575663 CDC42BPBQ9Y5S2 1711 aa9.8□□□□□ -0.84
SMG6-219ENST00000575663 CCDC18Q5T9S5 1454 aa9.79□□□□□ -0.84
SMG6-219ENST00000575663 ARHGAP35Q9NRY4 1499 aa9.79□□□□□ -0.84
SMG6-219ENST00000575663 SHANK2Q9UPX8 1470 aa9.79□□□□□ -0.84
SMG6-219ENST00000575663 SUPT6HQ7KZ85 1726 aaKnown RBP9.79□□□□□ -0.84
SMG6-219ENST00000575663 CLTCQ00610 1675 aaKnown RBP9.79□□□□□ -0.84
SMG6-219ENST00000575663 PLXNC1O60486 1568 aa9.79□□□□□ -0.84
SMG6-219ENST00000575663 A2MP01023 1474 aa9.79□□□□□ -0.84
SMG6-219ENST00000575663 ATP7AQ04656 1500 aa9.78□□□□□ -0.84
SMG6-219ENST00000575663 SYCP2Q9BX26 1530 aa9.78□□□□□ -0.84
SMG6-219ENST00000575663 UBTFP17480 764 aaKnown RBP9.77□□□□□ -0.85
SMG6-219ENST00000575663 GGT6Q6P531 493 aa9.77□□□□□ -0.85
SMG6-219ENST00000575663 ZNF777Q9ULD5 760 aaPredicted RBP9.77□□□□□ -0.85
SMG6-219ENST00000575663 DNMT1P26358 1616 aaKnown RBP9.76□□□□□ -0.85
SMG6-219ENST00000575663 PLEKHH2Q8IVE3 1493 aa9.76□□□□□ -0.85
SMG6-219ENST00000575663 NEURL4Q96JN8 1562 aa9.75□□□□□ -0.85
SMG6-219ENST00000575663 INO80Q9ULG1 1556 aaPredicted RBP9.75□□□□□ -0.85
SMG6-219ENST00000575663 TNRQ92752 1358 aa9.75□□□□□ -0.85
SMG6-219ENST00000575663 KIAA1107Q9UPP5 1409 aa9.74□□□□□ -0.85
SMG6-219ENST00000575663 POLR1AO95602 1720 aaPredicted RBP9.74□□□□□ -0.85
SMG6-219ENST00000575663 ANKLE2Q86XL3 938 aa9.74□□□□□ -0.85
SMG6-219ENST00000575663 RNF17Q9BXT8 1623 aaKnown RBP9.73□□□□□ -0.85
SMG6-219ENST00000575663 CASKIN1Q8WXD9 1431 aa9.73□□□□□ -0.85
SMG6-219ENST00000575663 VWDEQ8N2E2 1590 aa9.72□□□□□ -0.85
SMG6-219ENST00000575663 HNRNPMP52272 730 aaKnown RBP eCLIP9.72□□□□□ -0.85
SMG6-219ENST00000575663 SENP3Q9H4L4 574 aaPredicted RBP9.72□□□□□ -0.85
SMG6-219ENST00000575663 CDC42BPAQ5VT25 1732 aa9.72□□□□□ -0.85
SMG6-219ENST00000575663 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.72□□□□□ -0.85
SMG6-219ENST00000575663 NPHP4O75161 1426 aaPredicted RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms