RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 ANKRD30BQ9BXX2 1392 aa21.57■■□□□ 1.04
NUP88-207ENST00000573584 NBPF8Q3BBV2 869 aa21.56■■□□□ 1.04
NUP88-207ENST00000573584 PBRM1Q86U86 1689 aa21.56■■□□□ 1.04
NUP88-207ENST00000573584 ROCK1Q13464 1354 aa21.56■■□□□ 1.04
NUP88-207ENST00000573584 CDK11AQ9UQ88 783 aaPredicted RBP21.55■■□□□ 1.04
NUP88-207ENST00000573584 DAPK1P53355 1430 aa21.55■■□□□ 1.04
NUP88-207ENST00000573584 FAM9BQ8IZU0 186 aa21.54■■□□□ 1.04
NUP88-207ENST00000573584 RPRD2Q5VT52 1461 aaKnown RBP21.54■■□□□ 1.04
NUP88-207ENST00000573584 ADAMTS12P58397 1594 aa21.54■■□□□ 1.04
NUP88-207ENST00000573584 ERICH6BQ5W0A0 696 aa21.53■■□□□ 1.04
NUP88-207ENST00000573584 SLC4A1APQ9BWU0 796 aaKnown RBP21.53■■□□□ 1.04
NUP88-207ENST00000573584 MRS2Q9HD23 443 aa21.53■■□□□ 1.04
NUP88-207ENST00000573584 ZNF644Q9H582 1327 aaPredicted RBP21.52■■□□□ 1.04
NUP88-207ENST00000573584 ABCC5O15440 1437 aa21.52■■□□□ 1.04
NUP88-207ENST00000573584 TEX14Q8IWB6 1497 aa21.48■■□□□ 1.03
NUP88-207ENST00000573584 KIF7Q2M1P5 1343 aa21.48■■□□□ 1.03
NUP88-207ENST00000573584 PPP4R2Q9NY27 417 aa21.48■■□□□ 1.03
NUP88-207ENST00000573584 SPATA31E1Q6ZUB1 1445 aa21.46■■□□□ 1.03
NUP88-207ENST00000573584 ZBED9Q6R2W3 1325 aa21.46■■□□□ 1.03
NUP88-207ENST00000573584 DNMT1P26358 1616 aaKnown RBP21.46■■□□□ 1.03
NUP88-207ENST00000573584 MSH5O43196 834 aa21.45■■□□□ 1.02
NUP88-207ENST00000573584 FANCIQ9NVI1 1328 aa21.43■■□□□ 1.02
NUP88-207ENST00000573584 NUP153P49790 1475 aaKnown RBP21.42■■□□□ 1.02
NUP88-207ENST00000573584 DISP1Q96F81 1524 aa21.41■■□□□ 1.02
NUP88-207ENST00000573584 KIAA0586Q9BVV6 1533 aa21.41■■□□□ 1.02
NUP88-207ENST00000573584 MRC2Q9UBG0 1479 aa21.4■■□□□ 1.02
NUP88-207ENST00000573584 KIAA0556O60303 1618 aa21.39■■□□□ 1.01
NUP88-207ENST00000573584 CFDP1Q9UEE9 299 aaPredicted RBP21.38■■□□□ 1.01
NUP88-207ENST00000573584 ZNF608Q9ULD9 1512 aaPredicted RBP21.37■■□□□ 1.01
NUP88-207ENST00000573584 PZPP20742 1482 aa21.36■■□□□ 1.01
NUP88-207ENST00000573584 B4GALNT3Q6L9W6 998 aa21.35■■□□□ 1.01
NUP88-207ENST00000573584 RAPGEF6Q8TEU7 1601 aa21.35■■□□□ 1.01
NUP88-207ENST00000573584 PRG4Q92954 1404 aaPredicted RBP21.34■■□□□ 1.01
NUP88-207ENST00000573584 IFT140Q96RY7 1462 aa21.33■■□□□ 1.01
NUP88-207ENST00000573584 ZNF326Q5BKZ1 582 aaKnown RBP21.32■■□□□ 1
NUP88-207ENST00000573584 ZNF777Q9ULD5 760 aaPredicted RBP21.32■■□□□ 1
NUP88-207ENST00000573584 TROQ12816 1431 aaPredicted RBP21.32■■□□□ 1
NUP88-207ENST00000573584 POLR3GLQ9BT43 218 aa21.32■■□□□ 1
NUP88-207ENST00000573584 CAMSAP2Q08AD1 1489 aa21.32■■□□□ 1
NUP88-207ENST00000573584 POLR1AO95602 1720 aaPredicted RBP21.31■■□□□ 1
NUP88-207ENST00000573584 CNGB1Q14028 1251 aaPredicted RBP21.31■■□□□ 1
NUP88-207ENST00000573584 USP47Q96K76 1375 aa21.3■■□□□ 1
NUP88-207ENST00000573584 KIAA1107Q9UPP5 1409 aa21.3■■□□□ 1
NUP88-207ENST00000573584 PKD2Q13563 968 aa21.3■■□□□ 1
NUP88-207ENST00000573584 DHX29Q7Z478 1369 aaKnown RBP21.29■■□□□ 1
NUP88-207ENST00000573584 ERICH6Q7L0X2 663 aa21.28■■□□□ 1
NUP88-207ENST00000573584 GRIN2AQ12879 1464 aa21.28■■□□□ 1
NUP88-207ENST00000573584 MBD5Q9P267 1494 aa21.28■■□□□ 1
NUP88-207ENST00000573584 GPATCH8Q9UKJ3 1502 aaKnown RBP21.27■■□□□ 1
NUP88-207ENST00000573584 ANKRD30AQ9BXX3 1397 aa21.25■□□□□ 0.99
NUP88-207ENST00000573584 SMG6Q86US8 1419 aaKnown RBP21.24■□□□□ 0.99
NUP88-207ENST00000573584 ADGRL2O95490 1459 aa21.24■□□□□ 0.99
NUP88-207ENST00000573584 ARID4BQ4LE39 1312 aaPredicted RBP21.23■□□□□ 0.99
NUP88-207ENST00000573584 PLB1Q6P1J6 1458 aa21.23■□□□□ 0.99
NUP88-207ENST00000573584 ITSN2Q9NZM3 1697 aa21.22■□□□□ 0.99
NUP88-207ENST00000573584 ADGBQ8N7X0 1667 aa21.21■□□□□ 0.99
NUP88-207ENST00000573584 NUDCQ9Y266 331 aa21.21■□□□□ 0.99
NUP88-207ENST00000573584 BCORL1Q5H9F3 1711 aa21.21■□□□□ 0.99
NUP88-207ENST00000573584 ANKRD50Q9ULJ7 1429 aa21.21■□□□□ 0.99
NUP88-207ENST00000573584 CHMP7Q8WUX9 453 aaPredicted RBP21.19■□□□□ 0.98
NUP88-207ENST00000573584 BCL11AQ9H165 835 aa21.19■□□□□ 0.98
NUP88-207ENST00000573584 KIF14Q15058 1648 aa21.19■□□□□ 0.98
NUP88-207ENST00000573584 NUP155O75694 1391 aa21.17■□□□□ 0.98
NUP88-207ENST00000573584 CARD11Q9BXL7 1154 aa21.17■□□□□ 0.98
NUP88-207ENST00000573584 KDM5CP41229 1560 aa21.17■□□□□ 0.98
NUP88-207ENST00000573584 TMC1Q8TDI8 760 aa21.16■□□□□ 0.98
NUP88-207ENST00000573584 ROCK2O75116 1388 aaKnown RBP21.16■□□□□ 0.98
NUP88-207ENST00000573584 PNISRQ8TF01 805 aaKnown RBP21.16■□□□□ 0.98
NUP88-207ENST00000573584 EIF4G3O43432 1585 aaKnown RBP21.15■□□□□ 0.98
NUP88-207ENST00000573584 UHRF1BP1Q6BDS2 1440 aa21.15■□□□□ 0.98
NUP88-207ENST00000573584 CROCC2H7BZ55 1655 aa21.14■□□□□ 0.98
NUP88-207ENST00000573584 FBLN2P98095 1184 aa21.14■□□□□ 0.97
NUP88-207ENST00000573584 RNF123Q5XPI4 1314 aa21.14■□□□□ 0.97
NUP88-207ENST00000573584 ADCY10Q96PN6 1610 aa21.14■□□□□ 0.97
NUP88-207ENST00000573584 PLEKHD1A6NEE1 506 aa21.13■□□□□ 0.97
NUP88-207ENST00000573584 SENP3-EIF4A1A0A087X0R7 540 aa21.13■□□□□ 0.97
NUP88-207ENST00000573584 JPH4Q96JJ6 628 aa21.12■□□□□ 0.97
NUP88-207ENST00000573584 CARMIL2Q6F5E8 1435 aa21.12■□□□□ 0.97
NUP88-207ENST00000573584 RALGAPBQ86X10 1494 aa21.12■□□□□ 0.97
NUP88-207ENST00000573584 KDM2AQ9Y2K7 1162 aa21.12■□□□□ 0.97
NUP88-207ENST00000573584 CCDC136Q96JN2 1154 aa21.11■□□□□ 0.97
NUP88-207ENST00000573584 TSPY4P0CV99 314 aa21.1■□□□□ 0.97
NUP88-207ENST00000573584 TSPY10P0CW01 314 aa21.1■□□□□ 0.97
NUP88-207ENST00000573584 MAGI1Q96QZ7 1491 aaPredicted RBP21.1■□□□□ 0.97
NUP88-207ENST00000573584 CEP170Q5SW79 1584 aa21.1■□□□□ 0.97
NUP88-207ENST00000573584 ST20-MTHFSA0A0A6YYL1 179 aa21.1■□□□□ 0.97
NUP88-207ENST00000573584 C9orf84Q5VXU9 1444 aa21.1■□□□□ 0.97
NUP88-207ENST00000573584 KIF15Q9NS87 1388 aa21.09■□□□□ 0.97
NUP88-207ENST00000573584 SYNJ2O15056 1496 aa21.08■□□□□ 0.96
NUP88-207ENST00000573584 DCAF11Q8TEB1 546 aa21.07■□□□□ 0.96
NUP88-207ENST00000573584 ARHGEF12Q9NZN5 1544 aa21.07■□□□□ 0.96
NUP88-207ENST00000573584 SHANK2Q9UPX8 1470 aa21.06■□□□□ 0.96
NUP88-207ENST00000573584 RALBP1Q15311 655 aa21.04■□□□□ 0.96
NUP88-207ENST00000573584 MYBBP1AQ9BQG0 1328 aaKnown RBP21.04■□□□□ 0.96
NUP88-207ENST00000573584 ABCC10Q5T3U5 1492 aa21.03■□□□□ 0.96
NUP88-207ENST00000573584 HNRNPMP52272 730 aaKnown RBP eCLIP21.02■□□□□ 0.96
NUP88-207ENST00000573584 BRD4O60885 1362 aaPredicted RBP21.02■□□□□ 0.96
NUP88-207ENST00000573584 LRPPRCP42704 1394 aaKnown RBP21.02■□□□□ 0.96
NUP88-207ENST00000573584 CDC42BPAQ5VT25 1732 aa21.02■□□□□ 0.95
NUP88-207ENST00000573584 KTN1Q86UP2 1357 aaKnown RBP21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms