RNA–Protein interactions for RNA: ENST00000571272.5

SCARF1-205, Transcript of scavenger receptor class F member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCARF1, Length 2,871 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-205ENST00000571272 MIA2Q96PC5 1412 aa24.01■■□□□ 1.43
SCARF1-205ENST00000571272 PPP4R2Q9NY27 417 aa24.01■■□□□ 1.43
SCARF1-205ENST00000571272 KIF21AQ7Z4S6 1674 aa24■■□□□ 1.43
SCARF1-205ENST00000571272 CNGB1Q14028 1251 aaPredicted RBP23.99■■□□□ 1.43
SCARF1-205ENST00000571272 ZNF644Q9H582 1327 aaPredicted RBP23.98■■□□□ 1.43
SCARF1-205ENST00000571272 ANKRD30BQ9BXX2 1392 aa23.98■■□□□ 1.43
SCARF1-205ENST00000571272 SLC4A1APQ9BWU0 796 aaKnown RBP23.97■■□□□ 1.43
SCARF1-205ENST00000571272 FANCIQ9NVI1 1328 aa23.97■■□□□ 1.43
SCARF1-205ENST00000571272 B4GALNT3Q6L9W6 998 aa23.97■■□□□ 1.43
SCARF1-205ENST00000571272 KIF7Q2M1P5 1343 aa23.96■■□□□ 1.43
SCARF1-205ENST00000571272 BCL11AQ9H165 835 aa23.96■■□□□ 1.43
SCARF1-205ENST00000571272 IQGAP2Q13576 1575 aa23.95■■□□□ 1.43
SCARF1-205ENST00000571272 ERICH6BQ5W0A0 696 aa23.95■■□□□ 1.42
SCARF1-205ENST00000571272 TARBP1Q13395 1621 aaKnown RBP23.94■■□□□ 1.42
SCARF1-205ENST00000571272 RPRD2Q5VT52 1461 aaKnown RBP23.94■■□□□ 1.42
SCARF1-205ENST00000571272 ZBED9Q6R2W3 1325 aa23.94■■□□□ 1.42
SCARF1-205ENST00000571272 DAPK1P53355 1430 aa23.93■■□□□ 1.42
SCARF1-205ENST00000571272 ERICH6Q7L0X2 663 aa23.91■■□□□ 1.42
SCARF1-205ENST00000571272 WDR62O43379 1518 aa23.91■■□□□ 1.42
SCARF1-205ENST00000571272 POLR3GLQ9BT43 218 aa23.9■■□□□ 1.42
SCARF1-205ENST00000571272 TEX14Q8IWB6 1497 aa23.9■■□□□ 1.42
SCARF1-205ENST00000571272 ABCC5O15440 1437 aa23.9■■□□□ 1.42
SCARF1-205ENST00000571272 ROCK1Q13464 1354 aa23.87■■□□□ 1.41
SCARF1-205ENST00000571272 SPATA31E1Q6ZUB1 1445 aa23.87■■□□□ 1.41
SCARF1-205ENST00000571272 ZNF326Q5BKZ1 582 aaKnown RBP23.86■■□□□ 1.41
SCARF1-205ENST00000571272 PBRM1Q86U86 1689 aa23.85■■□□□ 1.41
SCARF1-205ENST00000571272 SENP3-EIF4A1A0A087X0R7 540 aa23.83■■□□□ 1.41
SCARF1-205ENST00000571272 ADAMTS12P58397 1594 aa23.81■■□□□ 1.4
SCARF1-205ENST00000571272 DNMT1P26358 1616 aaKnown RBP23.8■■□□□ 1.4
SCARF1-205ENST00000571272 ZNF777Q9ULD5 760 aaPredicted RBP23.77■■□□□ 1.4
SCARF1-205ENST00000571272 NUP153P49790 1475 aaKnown RBP23.75■■□□□ 1.39
SCARF1-205ENST00000571272 CFDP1Q9UEE9 299 aaPredicted RBP23.75■■□□□ 1.39
SCARF1-205ENST00000571272 PZPP20742 1482 aa23.74■■□□□ 1.39
SCARF1-205ENST00000571272 DHX29Q7Z478 1369 aaKnown RBP23.73■■□□□ 1.39
SCARF1-205ENST00000571272 USP47Q96K76 1375 aa23.73■■□□□ 1.39
SCARF1-205ENST00000571272 PKD2Q13563 968 aa23.71■■□□□ 1.39
SCARF1-205ENST00000571272 PRG4Q92954 1404 aaPredicted RBP23.71■■□□□ 1.39
SCARF1-205ENST00000571272 DISP1Q96F81 1524 aa23.71■■□□□ 1.39
SCARF1-205ENST00000571272 POLR1AO95602 1720 aaPredicted RBP23.7■■□□□ 1.38
SCARF1-205ENST00000571272 ZNF608Q9ULD9 1512 aaPredicted RBP23.69■■□□□ 1.38
SCARF1-205ENST00000571272 NUDCQ9Y266 331 aa23.68■■□□□ 1.38
SCARF1-205ENST00000571272 KIAA0556O60303 1618 aa23.68■■□□□ 1.38
SCARF1-205ENST00000571272 SMG6Q86US8 1419 aaKnown RBP23.68■■□□□ 1.38
SCARF1-205ENST00000571272 CAMSAP2Q08AD1 1489 aa23.66■■□□□ 1.38
SCARF1-205ENST00000571272 BCORL1Q5H9F3 1711 aa23.66■■□□□ 1.38
SCARF1-205ENST00000571272 KIAA0586Q9BVV6 1533 aa23.66■■□□□ 1.38
SCARF1-205ENST00000571272 KIAA1107Q9UPP5 1409 aa23.65■■□□□ 1.38
SCARF1-205ENST00000571272 RAPGEF6Q8TEU7 1601 aa23.64■■□□□ 1.38
SCARF1-205ENST00000571272 CCDC136Q96JN2 1154 aa23.63■■□□□ 1.37
SCARF1-205ENST00000571272 MBD5Q9P267 1494 aa23.63■■□□□ 1.37
SCARF1-205ENST00000571272 TMC1Q8TDI8 760 aa23.62■■□□□ 1.37
SCARF1-205ENST00000571272 TROQ12816 1431 aaPredicted RBP23.62■■□□□ 1.37
SCARF1-205ENST00000571272 MRC2Q9UBG0 1479 aa23.61■■□□□ 1.37
SCARF1-205ENST00000571272 PNISRQ8TF01 805 aaKnown RBP23.6■■□□□ 1.37
SCARF1-205ENST00000571272 CARD11Q9BXL7 1154 aa23.59■■□□□ 1.37
SCARF1-205ENST00000571272 KDM2AQ9Y2K7 1162 aa23.59■■□□□ 1.37
SCARF1-205ENST00000571272 GPATCH8Q9UKJ3 1502 aaKnown RBP23.59■■□□□ 1.37
SCARF1-205ENST00000571272 PLB1Q6P1J6 1458 aa23.57■■□□□ 1.36
SCARF1-205ENST00000571272 RNF123Q5XPI4 1314 aa23.56■■□□□ 1.36
SCARF1-205ENST00000571272 ANKRD30AQ9BXX3 1397 aa23.56■■□□□ 1.36
SCARF1-205ENST00000571272 NOP58Q9Y2X3 529 aaKnown RBP23.55■■□□□ 1.36
SCARF1-205ENST00000571272 ANKRD50Q9ULJ7 1429 aa23.55■■□□□ 1.36
SCARF1-205ENST00000571272 PAK3O75914 559 aaPredicted RBP23.55■■□□□ 1.36
SCARF1-205ENST00000571272 KDM5CP41229 1560 aa23.55■■□□□ 1.36
SCARF1-205ENST00000571272 NUP155O75694 1391 aa23.54■■□□□ 1.36
SCARF1-205ENST00000571272 KIF14Q15058 1648 aa23.54■■□□□ 1.36
SCARF1-205ENST00000571272 ARID4BQ4LE39 1312 aaPredicted RBP23.53■■□□□ 1.36
SCARF1-205ENST00000571272 ST20-MTHFSA0A0A6YYL1 179 aa23.53■■□□□ 1.36
SCARF1-205ENST00000571272 GRIN2AQ12879 1464 aa23.53■■□□□ 1.36
SCARF1-205ENST00000571272 IFT140Q96RY7 1462 aa23.52■■□□□ 1.36
SCARF1-205ENST00000571272 ADGBQ8N7X0 1667 aa23.52■■□□□ 1.35
SCARF1-205ENST00000571272 FBLN2P98095 1184 aa23.51■■□□□ 1.35
SCARF1-205ENST00000571272 NBR1Q14596 966 aa23.51■■□□□ 1.35
SCARF1-205ENST00000571272 ADGRL2O95490 1459 aa23.51■■□□□ 1.35
SCARF1-205ENST00000571272 ITSN2Q9NZM3 1697 aa23.49■■□□□ 1.35
SCARF1-205ENST00000571272 ROCK2O75116 1388 aaKnown RBP23.49■■□□□ 1.35
SCARF1-205ENST00000571272 DCAF11Q8TEB1 546 aa23.49■■□□□ 1.35
SCARF1-205ENST00000571272 SALL2Q9Y467 1007 aaPredicted RBP23.49■■□□□ 1.35
SCARF1-205ENST00000571272 CHMP7Q8WUX9 453 aaPredicted RBP23.48■■□□□ 1.35
SCARF1-205ENST00000571272 KIF15Q9NS87 1388 aa23.48■■□□□ 1.35
SCARF1-205ENST00000571272 RALGAPBQ86X10 1494 aa23.46■■□□□ 1.35
SCARF1-205ENST00000571272 DEKP35659 375 aaKnown RBP23.46■■□□□ 1.35
SCARF1-205ENST00000571272 UHRF1BP1Q6BDS2 1440 aa23.46■■□□□ 1.35
SCARF1-205ENST00000571272 ANP32AP39687 249 aaKnown RBP23.44■■□□□ 1.34
SCARF1-205ENST00000571272 CROCC2H7BZ55 1655 aa23.43■■□□□ 1.34
SCARF1-205ENST00000571272 PLEKHD1A6NEE1 506 aa23.43■■□□□ 1.34
SCARF1-205ENST00000571272 MYBBP1AQ9BQG0 1328 aaKnown RBP23.43■■□□□ 1.34
SCARF1-205ENST00000571272 MYT1LQ9UL68 1186 aa23.42■■□□□ 1.34
SCARF1-205ENST00000571272 TSPY4P0CV99 314 aa23.42■■□□□ 1.34
SCARF1-205ENST00000571272 TSPY10P0CW01 314 aa23.42■■□□□ 1.34
SCARF1-205ENST00000571272 C9orf84Q5VXU9 1444 aa23.41■■□□□ 1.34
SCARF1-205ENST00000571272 LRPPRCP42704 1394 aaKnown RBP23.41■■□□□ 1.34
SCARF1-205ENST00000571272 JPH4Q96JJ6 628 aa23.4■■□□□ 1.34
SCARF1-205ENST00000571272 BRD4O60885 1362 aaPredicted RBP23.39■■□□□ 1.34
SCARF1-205ENST00000571272 HNRNPMP52272 730 aaKnown RBP eCLIP23.39■■□□□ 1.34
SCARF1-205ENST00000571272 RALBP1Q15311 655 aa23.39■■□□□ 1.34
SCARF1-205ENST00000571272 IPO9Q96P70 1041 aaKnown RBP23.39■■□□□ 1.34
SCARF1-205ENST00000571272 EIF4G3O43432 1585 aaKnown RBP23.39■■□□□ 1.33
SCARF1-205ENST00000571272 EXOC6Q8TAG9 804 aa23.38■■□□□ 1.33
SCARF1-205ENST00000571272 ADCY10Q96PN6 1610 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms