RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 MAGI2Q86UL8 1455 aa27.43■■□□□ 1.98
CLK3-223ENST00000568488 DMRT2Q9Y5R5 561 aa27.41■■□□□ 1.98
CLK3-223ENST00000568488 HECW1Q76N89 1606 aa27.4■■□□□ 1.98
CLK3-223ENST00000568488 SCAPERQ9BY12 1400 aa27.4■■□□□ 1.98
CLK3-223ENST00000568488 TTC37Q6PGP7 1564 aa27.39■■□□□ 1.97
CLK3-223ENST00000568488 ATP10AO60312 1499 aa27.33■■□□□ 1.97
CLK3-223ENST00000568488 PREX1Q8TCU6 1659 aa27.33■■□□□ 1.97
CLK3-223ENST00000568488 ARHGEF12Q9NZN5 1544 aa27.31■■□□□ 1.96
CLK3-223ENST00000568488 PLCH2O75038 1416 aa27.3■■□□□ 1.96
CLK3-223ENST00000568488 C9orf84Q5VXU9 1444 aa27.3■■□□□ 1.96
CLK3-223ENST00000568488 MYT1LQ9UL68 1186 aa27.28■■□□□ 1.96
CLK3-223ENST00000568488 EFCAB2Q5VUJ9 269 aa27.27■■□□□ 1.96
CLK3-223ENST00000568488 ATP1B4Q9UN42 357 aaPredicted RBP27.27■■□□□ 1.96
CLK3-223ENST00000568488 UHRF1BP1Q6BDS2 1440 aa27.26■■□□□ 1.95
CLK3-223ENST00000568488 STRCQ7RTU9 1775 aa27.26■■□□□ 1.95
CLK3-223ENST00000568488 CDK13Q14004 1512 aaKnown RBP27.25■■□□□ 1.95
CLK3-223ENST00000568488 SPATA31D1Q6ZQQ2 1576 aa27.21■■□□□ 1.95
CLK3-223ENST00000568488 AFAP1Q8N556 730 aa27.19■■□□□ 1.94
CLK3-223ENST00000568488 ESF1Q9H501 851 aaKnown RBP27.16■■□□□ 1.94
CLK3-223ENST00000568488 PTPRTO14522 1441 aa27.16■■□□□ 1.94
CLK3-223ENST00000568488 SETD1BQ9UPS6 1966 aaKnown RBP27.15■■□□□ 1.94
CLK3-223ENST00000568488 CDK11AQ9UQ88 783 aaPredicted RBP27.13■■□□□ 1.93
CLK3-223ENST00000568488 ZNF518AQ6AHZ1 1483 aa27.12■■□□□ 1.93
CLK3-223ENST00000568488 MYO5CQ9NQX4 1742 aa27.1■■□□□ 1.93
CLK3-223ENST00000568488 EEA1Q15075 1411 aa27.08■■□□□ 1.93
CLK3-223ENST00000568488 ARHGAP5Q13017 1502 aa27.06■■□□□ 1.92
CLK3-223ENST00000568488 LTBP4Q8N2S1 1624 aa27.05■■□□□ 1.92
CLK3-223ENST00000568488 EHMT2Q96KQ7 1210 aa27.04■■□□□ 1.92
CLK3-223ENST00000568488 C3P01024 1663 aa27.04■■□□□ 1.92
CLK3-223ENST00000568488 TRAPPC8Q9Y2L5 1435 aa27.03■■□□□ 1.92
CLK3-223ENST00000568488 KDM5CP41229 1560 aa27.02■■□□□ 1.92
CLK3-223ENST00000568488 DIP2CQ9Y2E4 1556 aa27.02■■□□□ 1.92
CLK3-223ENST00000568488 KIF14Q15058 1648 aa27.01■■□□□ 1.92
CLK3-223ENST00000568488 IQSEC2Q5JU85 1478 aa26.99■■□□□ 1.91
CLK3-223ENST00000568488 FMN1Q68DA7 1419 aa26.98■■□□□ 1.91
CLK3-223ENST00000568488 UBAP1LF5GYI3 381 aa26.97■■□□□ 1.91
CLK3-223ENST00000568488 TROQ12816 1431 aaPredicted RBP26.97■■□□□ 1.91
CLK3-223ENST00000568488 NCOA1Q15788 1441 aa26.97■■□□□ 1.91
CLK3-223ENST00000568488 UBTFP17480 764 aaKnown RBP26.96■■□□□ 1.91
CLK3-223ENST00000568488 REREQ9P2R6 1566 aa26.96■■□□□ 1.91
CLK3-223ENST00000568488 MLH3Q9UHC1 1453 aa26.95■■□□□ 1.91
CLK3-223ENST00000568488 ABCA6Q8N139 1617 aa26.95■■□□□ 1.91
CLK3-223ENST00000568488 CLIP1P30622 1438 aa26.95■■□□□ 1.9
CLK3-223ENST00000568488 NCKAP5LQ9HCH0 1330 aa26.93■■□□□ 1.9
CLK3-223ENST00000568488 AGLP35573 1532 aa26.91■■□□□ 1.9
CLK3-223ENST00000568488 ZNF335Q9H4Z2 1342 aaPredicted RBP26.9■■□□□ 1.9
CLK3-223ENST00000568488 CNTLNQ9NXG0 1405 aa26.9■■□□□ 1.9
CLK3-223ENST00000568488 CAMSAP1Q5T5Y3 1602 aa26.9■■□□□ 1.9
CLK3-223ENST00000568488 CDC42BPBQ9Y5S2 1711 aa26.86■■□□□ 1.89
CLK3-223ENST00000568488 ARHGAP35Q9NRY4 1499 aa26.86■■□□□ 1.89
CLK3-223ENST00000568488 ZMYM3Q14202 1370 aa26.84■■□□□ 1.89
CLK3-223ENST00000568488 NPATQ14207 1427 aa26.82■■□□□ 1.88
CLK3-223ENST00000568488 ABCC1P33527 1531 aa26.81■■□□□ 1.88
CLK3-223ENST00000568488 ZNF777Q9ULD5 760 aaPredicted RBP26.8■■□□□ 1.88
CLK3-223ENST00000568488 KIDINS220Q9ULH0 1771 aa26.79■■□□□ 1.88
CLK3-223ENST00000568488 PKD2Q13563 968 aa26.78■■□□□ 1.88
CLK3-223ENST00000568488 SCAF1Q9H7N4 1312 aaKnown RBP26.78■■□□□ 1.88
CLK3-223ENST00000568488 ITSN2Q9NZM3 1697 aa26.78■■□□□ 1.88
CLK3-223ENST00000568488 PREX2Q70Z35 1606 aa26.76■■□□□ 1.87
CLK3-223ENST00000568488 LRRIQ1Q96JM4 1722 aa26.74■■□□□ 1.87
CLK3-223ENST00000568488 PIP4K2BP78356 416 aa26.73■■□□□ 1.87
CLK3-223ENST00000568488 MROH2AA6NES4 1674 aa26.73■■□□□ 1.87
CLK3-223ENST00000568488 SPAG9O60271 1321 aaKnown RBP26.72■■□□□ 1.87
CLK3-223ENST00000568488 PPP6R1Q9UPN7 881 aa26.72■■□□□ 1.87
CLK3-223ENST00000568488 HSPA1LP34931 641 aa26.7■■□□□ 1.86
CLK3-223ENST00000568488 HNRNPMP52272 730 aaKnown RBP eCLIP26.7■■□□□ 1.864e-10■■■■■ 38
CLK3-223ENST00000568488 GGT6Q6P531 493 aa26.7■■□□□ 1.86
CLK3-223ENST00000568488 SUPT6HQ7KZ85 1726 aaKnown RBP26.69■■□□□ 1.86
CLK3-223ENST00000568488 PLA2R1Q13018 1463 aa26.68■■□□□ 1.86
CLK3-223ENST00000568488 SAMD9LQ8IVG5 1584 aa26.68■■□□□ 1.86
CLK3-223ENST00000568488 CLTCQ00610 1675 aaKnown RBP26.66■■□□□ 1.86
CLK3-223ENST00000568488 TCOF1Q13428 1488 aaKnown RBP26.65■■□□□ 1.86
CLK3-223ENST00000568488 MYO3AQ8NEV4 1616 aa26.65■■□□□ 1.86
CLK3-223ENST00000568488 PTPRKQ15262 1439 aa26.65■■□□□ 1.86
CLK3-223ENST00000568488 CEP170BQ9Y4F5 1589 aaPredicted RBP26.64■■□□□ 1.86
CLK3-223ENST00000568488 CDC42BPAQ5VT25 1732 aa26.64■■□□□ 1.85
CLK3-223ENST00000568488 CCDC18Q5T9S5 1454 aa26.63■■□□□ 1.85
CLK3-223ENST00000568488 TOM1O60784 492 aa26.63■■□□□ 1.85
CLK3-223ENST00000568488 SYCP2Q9BX26 1530 aa26.61■■□□□ 1.85
CLK3-223ENST00000568488 ZNF142P52746 1687 aaPredicted RBP26.6■■□□□ 1.85
CLK3-223ENST00000568488 MED1Q15648 1581 aaPredicted RBP26.6■■□□□ 1.85
CLK3-223ENST00000568488 CASKIN1Q8WXD9 1431 aa26.6■■□□□ 1.85
CLK3-223ENST00000568488 A2MP01023 1474 aa26.59■■□□□ 1.85
CLK3-223ENST00000568488 PHF23Q9BUL5 403 aaPredicted RBP26.58■■□□□ 1.85
CLK3-223ENST00000568488 ATP7AQ04656 1500 aa26.56■■□□□ 1.84
CLK3-223ENST00000568488 GPATCH8Q9UKJ3 1502 aaKnown RBP26.55■■□□□ 1.84
CLK3-223ENST00000568488 CFDP1Q9UEE9 299 aaPredicted RBP26.55■■□□□ 1.84
CLK3-223ENST00000568488 A2ML1A8K2U0 1454 aa26.52■■□□□ 1.84
CLK3-223ENST00000568488 PLXNC1O60486 1568 aa26.51■■□□□ 1.83
CLK3-223ENST00000568488 KIAA1107Q9UPP5 1409 aa26.49■■□□□ 1.83
CLK3-223ENST00000568488 SENP3Q9H4L4 574 aaPredicted RBP26.49■■□□□ 1.83
CLK3-223ENST00000568488 DNMT1P26358 1616 aaKnown RBP26.49■■□□□ 1.83
CLK3-223ENST00000568488 CPS1P31327 1500 aa26.49■■□□□ 1.83
CLK3-223ENST00000568488 SHANK2Q9UPX8 1470 aa26.49■■□□□ 1.83
CLK3-223ENST00000568488 PLEKHH2Q8IVE3 1493 aa26.48■■□□□ 1.83
CLK3-223ENST00000568488 INO80Q9ULG1 1556 aaPredicted RBP26.47■■□□□ 1.83
CLK3-223ENST00000568488 FBXO31Q5XUX0 539 aaPredicted RBP26.47■■□□□ 1.83
CLK3-223ENST00000568488 CCNB3Q8WWL7 1395 aa26.46■■□□□ 1.83
CLK3-223ENST00000568488 ANKLE2Q86XL3 938 aa26.44■■□□□ 1.82
CLK3-223ENST00000568488 TNRQ92752 1358 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms