RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 AKNAQ7Z591 1439 aa24.09■■□□□ 1.45
VPS39-210ENST00000568357 KIF14Q15058 1648 aa24.07■■□□□ 1.44
VPS39-210ENST00000568357 ARHGEF40Q8TER5 1519 aa24.06■■□□□ 1.44
VPS39-210ENST00000568357 ARID4BQ4LE39 1312 aaPredicted RBP24.06■■□□□ 1.44
VPS39-210ENST00000568357 HSPA2P54652 639 aa24.05■■□□□ 1.44
VPS39-210ENST00000568357 EFCAB2Q5VUJ9 269 aa24.03■■□□□ 1.44
VPS39-210ENST00000568357 RICTORQ6R327 1708 aa24.01■■□□□ 1.43
VPS39-210ENST00000568357 SIGLEC1Q9BZZ2 1709 aa24.01■■□□□ 1.43
VPS39-210ENST00000568357 DENND4BO75064 1496 aaPredicted RBP24■■□□□ 1.43
VPS39-210ENST00000568357 ILDR2Q71H61 639 aa23.99■■□□□ 1.43
VPS39-210ENST00000568357 CERKQ8TCT0 537 aa23.98■■□□□ 1.43
VPS39-210ENST00000568357 SCAPERQ9BY12 1400 aa23.96■■□□□ 1.43
VPS39-210ENST00000568357 PLPPR3Q6T4P5 718 aa23.96■■□□□ 1.43
VPS39-210ENST00000568357 CFAP74Q9C0B2 1584 aa23.95■■□□□ 1.43
VPS39-210ENST00000568357 DISP3Q9P2K9 1392 aa23.93■■□□□ 1.42
VPS39-210ENST00000568357 MYO5CQ9NQX4 1742 aa23.93■■□□□ 1.42
VPS39-210ENST00000568357 ARHGAP5Q13017 1502 aa23.92■■□□□ 1.42
VPS39-210ENST00000568357 MTUS2Q5JR59 1369 aa23.91■■□□□ 1.42
VPS39-210ENST00000568357 FER1L4A9Z1Z3 1794 aa23.91■■□□□ 1.42
VPS39-210ENST00000568357 SOCS7O14512 581 aa23.9■■□□□ 1.42
VPS39-210ENST00000568357 VPS8Q8N3P4 1428 aa23.9■■□□□ 1.42
VPS39-210ENST00000568357 POGZQ7Z3K3 1410 aa23.88■■□□□ 1.41
VPS39-210ENST00000568357 AFAP1Q8N556 730 aa23.87■■□□□ 1.41
VPS39-210ENST00000568357 ZMYM4Q5VZL5 1548 aa23.86■■□□□ 1.41
VPS39-210ENST00000568357 GPATCH8Q9UKJ3 1502 aaKnown RBP23.86■■□□□ 1.41
VPS39-210ENST00000568357 CDC42BPBQ9Y5S2 1711 aa23.85■■□□□ 1.41
VPS39-210ENST00000568357 ZFYVE16Q7Z3T8 1539 aa23.84■■□□□ 1.41
VPS39-210ENST00000568357 SPATA31D1Q6ZQQ2 1576 aa23.84■■□□□ 1.41
VPS39-210ENST00000568357 ZNF777Q9ULD5 760 aaPredicted RBP23.84■■□□□ 1.41
VPS39-210ENST00000568357 YEATS2Q9ULM3 1422 aa23.84■■□□□ 1.41
VPS39-210ENST00000568357 PREX2Q70Z35 1606 aa23.83■■□□□ 1.41
VPS39-210ENST00000568357 PREX1Q8TCU6 1659 aa23.83■■□□□ 1.4
VPS39-210ENST00000568357 CCNB3Q8WWL7 1395 aa23.82■■□□□ 1.4
VPS39-210ENST00000568357 ARHGEF12Q9NZN5 1544 aa23.81■■□□□ 1.4
VPS39-210ENST00000568357 CFDP1Q9UEE9 299 aaPredicted RBP23.81■■□□□ 1.4
VPS39-210ENST00000568357 MAGI2Q86UL8 1455 aa23.81■■□□□ 1.4
VPS39-210ENST00000568357 CDC42BPAQ5VT25 1732 aa23.79■■□□□ 1.4
VPS39-210ENST00000568357 STRCQ7RTU9 1775 aa23.79■■□□□ 1.4
VPS39-210ENST00000568357 EHBP1L1Q8N3D4 1523 aa23.79■■□□□ 1.4
VPS39-210ENST00000568357 TRAPPC8Q9Y2L5 1435 aa23.78■■□□□ 1.4
VPS39-210ENST00000568357 ZNF518AQ6AHZ1 1483 aa23.78■■□□□ 1.4
VPS39-210ENST00000568357 MLECQ14165 292 aa23.77■■□□□ 1.4
VPS39-210ENST00000568357 KANK4Q5T7N3 995 aaPredicted RBP23.76■■□□□ 1.39
VPS39-210ENST00000568357 TIAM1Q13009 1591 aa23.76■■□□□ 1.39
VPS39-210ENST00000568357 ABCC1P33527 1531 aa23.75■■□□□ 1.39
VPS39-210ENST00000568357 HNRNPMP52272 730 aaKnown RBP eCLIP23.75■■□□□ 1.39
VPS39-210ENST00000568357 MYT1LQ9UL68 1186 aa23.73■■□□□ 1.39
VPS39-210ENST00000568357 ZNF644Q9H582 1327 aaPredicted RBP23.73■■□□□ 1.39
VPS39-210ENST00000568357 NCOA2Q15596 1464 aa23.72■■□□□ 1.39
VPS39-210ENST00000568357 LRRC9Q6ZRR7 1453 aa23.72■■□□□ 1.39
VPS39-210ENST00000568357 KDM5CP41229 1560 aa23.72■■□□□ 1.39
VPS39-210ENST00000568357 SAMD9LQ8IVG5 1584 aa23.72■■□□□ 1.39
VPS39-210ENST00000568357 ATP10AO60312 1499 aa23.71■■□□□ 1.39
VPS39-210ENST00000568357 MAP3K1Q13233 1512 aa23.69■■□□□ 1.38
VPS39-210ENST00000568357 KIAA1107Q9UPP5 1409 aa23.69■■□□□ 1.38
VPS39-210ENST00000568357 MLH3Q9UHC1 1453 aa23.68■■□□□ 1.38
VPS39-210ENST00000568357 ITSN2Q9NZM3 1697 aa23.67■■□□□ 1.38
VPS39-210ENST00000568357 SYCP2Q9BX26 1530 aa23.66■■□□□ 1.38
VPS39-210ENST00000568357 APLP2Q06481 763 aa23.65■■□□□ 1.38
VPS39-210ENST00000568357 C9orf84Q5VXU9 1444 aa23.65■■□□□ 1.38
VPS39-210ENST00000568357 PLEKHH2Q8IVE3 1493 aa23.64■■□□□ 1.38
VPS39-210ENST00000568357 SUPT6HQ7KZ85 1726 aaKnown RBP23.64■■□□□ 1.37
VPS39-210ENST00000568357 CEBPAP49715 358 aaPredicted RBP23.63■■□□□ 1.37
VPS39-210ENST00000568357 SPAG9O60271 1321 aaKnown RBP23.62■■□□□ 1.37
VPS39-210ENST00000568357 MBD5Q9P267 1494 aa23.61■■□□□ 1.37
VPS39-210ENST00000568357 DIP2CQ9Y2E4 1556 aa23.6■■□□□ 1.37
VPS39-210ENST00000568357 UHRF1BP1Q6BDS2 1440 aa23.59■■□□□ 1.37
VPS39-210ENST00000568357 ABCA6Q8N139 1617 aa23.57■■□□□ 1.36
VPS39-210ENST00000568357 LTBP4Q8N2S1 1624 aa23.57■■□□□ 1.36
VPS39-210ENST00000568357 KIDINS220Q9ULH0 1771 aa23.56■■□□□ 1.36
VPS39-210ENST00000568357 DMRT2Q9Y5R5 561 aa23.56■■□□□ 1.36
VPS39-210ENST00000568357 C3P01024 1663 aa23.54■■□□□ 1.36
VPS39-210ENST00000568357 PTPRTO14522 1441 aa23.53■■□□□ 1.36
VPS39-210ENST00000568357 CAMSAP2Q08AD1 1489 aa23.53■■□□□ 1.36
VPS39-210ENST00000568357 REREQ9P2R6 1566 aa23.52■■□□□ 1.36
VPS39-210ENST00000568357 SETD1BQ9UPS6 1966 aaKnown RBP23.51■■□□□ 1.35
VPS39-210ENST00000568357 RSPH4AQ5TD94 716 aa23.51■■□□□ 1.35
VPS39-210ENST00000568357 ATP7AQ04656 1500 aa23.5■■□□□ 1.35
VPS39-210ENST00000568357 MYOM3Q5VTT5 1437 aa23.5■■□□□ 1.35
VPS39-210ENST00000568357 IQSEC2Q5JU85 1478 aa23.48■■□□□ 1.35
VPS39-210ENST00000568357 AGLP35573 1532 aa23.48■■□□□ 1.35
VPS39-210ENST00000568357 MIA2Q96PC5 1412 aa23.47■■□□□ 1.35
VPS39-210ENST00000568357 INO80Q9ULG1 1556 aaPredicted RBP23.47■■□□□ 1.35
VPS39-210ENST00000568357 RTEL1-TNFRSF6BF6WH68 1400 aa23.46■■□□□ 1.35
VPS39-210ENST00000568357 CCDC141Q6ZP82 1450 aa23.45■■□□□ 1.34
VPS39-210ENST00000568357 A2MP01023 1474 aa23.43■■□□□ 1.34
VPS39-210ENST00000568357 TSPY4P0CV99 314 aa23.43■■□□□ 1.34
VPS39-210ENST00000568357 TSPY10P0CW01 314 aa23.43■■□□□ 1.34
VPS39-210ENST00000568357 ARHGEF5Q12774 1597 aa23.4■■□□□ 1.34
VPS39-210ENST00000568357 NCOA1Q15788 1441 aa23.4■■□□□ 1.34
VPS39-210ENST00000568357 DHX29Q7Z478 1369 aaKnown RBP23.39■■□□□ 1.33
VPS39-210ENST00000568357 PLXNC1O60486 1568 aa23.37■■□□□ 1.33
VPS39-210ENST00000568357 ESF1Q9H501 851 aaKnown RBP23.37■■□□□ 1.33
VPS39-210ENST00000568357 GGT6Q6P531 493 aa23.36■■□□□ 1.33
VPS39-210ENST00000568357 FGD6Q6ZV73 1430 aa23.34■■□□□ 1.33
VPS39-210ENST00000568357 CAMSAP1Q5T5Y3 1602 aa23.34■■□□□ 1.33
VPS39-210ENST00000568357 ADGBQ8N7X0 1667 aa23.32■■□□□ 1.32
VPS39-210ENST00000568357 KIF3BO15066 747 aa23.31■■□□□ 1.32
VPS39-210ENST00000568357 PPARGC1BQ86YN6 1023 aaKnown RBP23.31■■□□□ 1.32
VPS39-210ENST00000568357 ABCC5O15440 1437 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms