RNA–Protein interactions for RNA: ENST00000563909.5

RNF40-205, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 711 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-205ENST00000563909 PREX1Q8TCU6 1659 aa27.22■■□□□ 1.95
RNF40-205ENST00000563909 STRCQ7RTU9 1775 aa27.2■■□□□ 1.94
RNF40-205ENST00000563909 SAMD9Q5K651 1589 aa27.19■■□□□ 1.94
RNF40-205ENST00000563909 HECW1Q76N89 1606 aa27.17■■□□□ 1.94
RNF40-205ENST00000563909 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.16■■□□□ 1.94
RNF40-205ENST00000563909 ARHGEF12Q9NZN5 1544 aa27.16■■□□□ 1.94
RNF40-205ENST00000563909 UHRF1BP1Q6BDS2 1440 aa27.12■■□□□ 1.93
RNF40-205ENST00000563909 ATP10AO60312 1499 aa27.12■■□□□ 1.93
RNF40-205ENST00000563909 SCAPERQ9BY12 1400 aa27.11■■□□□ 1.93
RNF40-205ENST00000563909 RANGAP1P46060 587 aaPredicted RBP27.1■■□□□ 1.93
RNF40-205ENST00000563909 PTPRTO14522 1441 aa27.08■■□□□ 1.93
RNF40-205ENST00000563909 C9orf84Q5VXU9 1444 aa27.07■■□□□ 1.92
RNF40-205ENST00000563909 LTBP4Q8N2S1 1624 aa27.01■■□□□ 1.92
RNF40-205ENST00000563909 PLCH2O75038 1416 aa27■■□□□ 1.91
RNF40-205ENST00000563909 SETD1BQ9UPS6 1966 aaKnown RBP26.99■■□□□ 1.91
RNF40-205ENST00000563909 IQSEC2Q5JU85 1478 aa26.98■■□□□ 1.91
RNF40-205ENST00000563909 EFCAB2Q5VUJ9 269 aa26.95■■□□□ 1.9
RNF40-205ENST00000563909 CSRNP3Q8WYN3 585 aa26.93■■□□□ 1.9
RNF40-205ENST00000563909 MYT1LQ9UL68 1186 aa26.91■■□□□ 1.9
RNF40-205ENST00000563909 UBAP1LF5GYI3 381 aa26.89■■□□□ 1.9
RNF40-205ENST00000563909 AFAP1Q8N556 730 aa26.89■■□□□ 1.9
RNF40-205ENST00000563909 ESF1Q9H501 851 aaKnown RBP26.89■■□□□ 1.9
RNF40-205ENST00000563909 CDK13Q14004 1512 aaKnown RBP26.88■■□□□ 1.89
RNF40-205ENST00000563909 C3P01024 1663 aa26.86■■□□□ 1.89
RNF40-205ENST00000563909 NCOA1Q15788 1441 aa26.86■■□□□ 1.89
RNF40-205ENST00000563909 TRAPPC8Q9Y2L5 1435 aa26.86■■□□□ 1.89
RNF40-205ENST00000563909 ZNF518AQ6AHZ1 1483 aa26.86■■□□□ 1.89
RNF40-205ENST00000563909 MYO5CQ9NQX4 1742 aa26.79■■□□□ 1.88
RNF40-205ENST00000563909 ZNF335Q9H4Z2 1342 aaPredicted RBP26.79■■□□□ 1.88
RNF40-205ENST00000563909 DIP2CQ9Y2E4 1556 aa26.79■■□□□ 1.88
RNF40-205ENST00000563909 KDM5CP41229 1560 aa26.78■■□□□ 1.88
RNF40-205ENST00000563909 ATP1B4Q9UN42 357 aaPredicted RBP26.77■■□□□ 1.88
RNF40-205ENST00000563909 REREQ9P2R6 1566 aa26.76■■□□□ 1.87
RNF40-205ENST00000563909 NCKAP5LQ9HCH0 1330 aa26.76■■□□□ 1.87
RNF40-205ENST00000563909 CAMSAP1Q5T5Y3 1602 aa26.75■■□□□ 1.87
RNF40-205ENST00000563909 ARHGAP5Q13017 1502 aa26.74■■□□□ 1.87
RNF40-205ENST00000563909 CDK11AQ9UQ88 783 aaPredicted RBP26.72■■□□□ 1.87
RNF40-205ENST00000563909 ABCA6Q8N139 1617 aa26.71■■□□□ 1.87
RNF40-205ENST00000563909 AGLP35573 1532 aa26.7■■□□□ 1.87
RNF40-205ENST00000563909 MLH3Q9UHC1 1453 aa26.69■■□□□ 1.86
RNF40-205ENST00000563909 CNTLNQ9NXG0 1405 aa26.69■■□□□ 1.86
RNF40-205ENST00000563909 KIF14Q15058 1648 aa26.68■■□□□ 1.86
RNF40-205ENST00000563909 HSPA1LP34931 641 aa26.65■■□□□ 1.86
RNF40-205ENST00000563909 NPATQ14207 1427 aa26.65■■□□□ 1.86
RNF40-205ENST00000563909 SCAF1Q9H7N4 1312 aaKnown RBP26.65■■□□□ 1.86
RNF40-205ENST00000563909 MED1Q15648 1581 aaPredicted RBP26.63■■□□□ 1.85
RNF40-205ENST00000563909 PKD2Q13563 968 aa26.62■■□□□ 1.85
RNF40-205ENST00000563909 PIP4K2BP78356 416 aa26.61■■□□□ 1.85
RNF40-205ENST00000563909 ZMYM3Q14202 1370 aa26.6■■□□□ 1.85
RNF40-205ENST00000563909 TROQ12816 1431 aaPredicted RBP26.59■■□□□ 1.85
RNF40-205ENST00000563909 CLIP1P30622 1438 aa26.56■■□□□ 1.84
RNF40-205ENST00000563909 PPP6R1Q9UPN7 881 aa26.55■■□□□ 1.84
RNF40-205ENST00000563909 EEA1Q15075 1411 aa26.55■■□□□ 1.84
RNF40-205ENST00000563909 FMN1Q68DA7 1419 aa26.55■■□□□ 1.84
RNF40-205ENST00000563909 PLA2R1Q13018 1463 aa26.55■■□□□ 1.84
RNF40-205ENST00000563909 PHF23Q9BUL5 403 aaPredicted RBP26.54■■□□□ 1.84
RNF40-205ENST00000563909 MROH2AA6NES4 1674 aa26.54■■□□□ 1.84
RNF40-205ENST00000563909 CDC42BPBQ9Y5S2 1711 aa26.53■■□□□ 1.84
RNF40-205ENST00000563909 TOM1O60784 492 aa26.52■■□□□ 1.84
RNF40-205ENST00000563909 TCOF1Q13428 1488 aaKnown RBP26.52■■□□□ 1.84
RNF40-205ENST00000563909 KIDINS220Q9ULH0 1771 aa26.51■■□□□ 1.83
RNF40-205ENST00000563909 ABCC1P33527 1531 aa26.51■■□□□ 1.83
RNF40-205ENST00000563909 ITSN2Q9NZM3 1697 aa26.47■■□□□ 1.83
RNF40-205ENST00000563909 MYO3AQ8NEV4 1616 aa26.47■■□□□ 1.83
RNF40-205ENST00000563909 SUPT6HQ7KZ85 1726 aaKnown RBP26.47■■□□□ 1.83
RNF40-205ENST00000563909 CEP170BQ9Y4F5 1589 aaPredicted RBP26.46■■□□□ 1.83
RNF40-205ENST00000563909 ZNF142P52746 1687 aaPredicted RBP26.46■■□□□ 1.83
RNF40-205ENST00000563909 PREX2Q70Z35 1606 aa26.44■■□□□ 1.82
RNF40-205ENST00000563909 PTPRKQ15262 1439 aa26.44■■□□□ 1.82
RNF40-205ENST00000563909 CLTCQ00610 1675 aaKnown RBP26.42■■□□□ 1.82
RNF40-205ENST00000563909 EHMT2Q96KQ7 1210 aa26.41■■□□□ 1.82
RNF40-205ENST00000563909 SPAG9O60271 1321 aaKnown RBP26.39■■□□□ 1.82
RNF40-205ENST00000563909 ARHGAP35Q9NRY4 1499 aa26.39■■□□□ 1.82
RNF40-205ENST00000563909 UBTFP17480 764 aaKnown RBP26.39■■□□□ 1.82
RNF40-205ENST00000563909 ZNF777Q9ULD5 760 aaPredicted RBP26.39■■□□□ 1.82
RNF40-205ENST00000563909 SAMD9LQ8IVG5 1584 aa26.38■■□□□ 1.81
RNF40-205ENST00000563909 CPS1P31327 1500 aa26.38■■□□□ 1.81
RNF40-205ENST00000563909 GGT6Q6P531 493 aa26.37■■□□□ 1.81
RNF40-205ENST00000563909 LRRIQ1Q96JM4 1722 aa26.36■■□□□ 1.81
RNF40-205ENST00000563909 SHANK2Q9UPX8 1470 aa26.36■■□□□ 1.81
RNF40-205ENST00000563909 A2ML1A8K2U0 1454 aa26.32■■□□□ 1.8
RNF40-205ENST00000563909 HNRNPMP52272 730 aaKnown RBP eCLIP26.32■■□□□ 1.8
RNF40-205ENST00000563909 SENP3Q9H4L4 574 aaPredicted RBP26.32■■□□□ 1.8
RNF40-205ENST00000563909 DNMT1P26358 1616 aaKnown RBP26.3■■□□□ 1.8
RNF40-205ENST00000563909 CDC42BPAQ5VT25 1732 aa26.29■■□□□ 1.8
RNF40-205ENST00000563909 A2MP01023 1474 aa26.29■■□□□ 1.8
RNF40-205ENST00000563909 SYCP2Q9BX26 1530 aa26.28■■□□□ 1.8
RNF40-205ENST00000563909 ATP7AQ04656 1500 aa26.27■■□□□ 1.8
RNF40-205ENST00000563909 PLXNC1O60486 1568 aa26.26■■□□□ 1.79
RNF40-205ENST00000563909 NEURL4Q96JN8 1562 aa26.24■■□□□ 1.79
RNF40-205ENST00000563909 ALKQ9UM73 1620 aa26.24■■□□□ 1.79
RNF40-205ENST00000563909 POLR1AO95602 1720 aaPredicted RBP26.23■■□□□ 1.79
RNF40-205ENST00000563909 ANKLE2Q86XL3 938 aa26.22■■□□□ 1.79
RNF40-205ENST00000563909 CCDC18Q5T9S5 1454 aa26.21■■□□□ 1.79
RNF40-205ENST00000563909 RGS17Q9UGC6 210 aaPredicted RBP26.2■■□□□ 1.78
RNF40-205ENST00000563909 VWDEQ8N2E2 1590 aa26.2■■□□□ 1.78
RNF40-205ENST00000563909 FBXO31Q5XUX0 539 aaPredicted RBP26.19■■□□□ 1.78
RNF40-205ENST00000563909 INO80Q9ULG1 1556 aaPredicted RBP26.19■■□□□ 1.78
RNF40-205ENST00000563909 GPATCH8Q9UKJ3 1502 aaKnown RBP26.18■■□□□ 1.78
RNF40-205ENST00000563909 TNRQ92752 1358 aa26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms