RNA–Protein interactions for RNA: ENST00000563909.5

RNF40-205, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 711 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-205ENST00000563909 NISCHQ9Y2I1 1504 aa40.85■■■■■ 4.13
RNF40-205ENST00000563909 ABCC9O60706 1549 aa38.04■■■■□ 3.68
RNF40-205ENST00000563909 CCDC180Q9P1Z9 1646 aa36.99■■■■□ 3.51
RNF40-205ENST00000563909 DNAJC5BQ9UF47 199 aa36.59■■■■□ 3.45
RNF40-205ENST00000563909 RB1CC1Q8TDY2 1594 aa35.72■■■■□ 3.31
RNF40-205ENST00000563909 PABPN1Q86U42 306 aaKnown RBP eCLIP35.33■■■■□ 3.25
RNF40-205ENST00000563909 NACADO15069 1562 aa35.24■■■■□ 3.23
RNF40-205ENST00000563909 DCAF8L2P0C7V8 631 aa35.06■■■■□ 3.2
RNF40-205ENST00000563909 UNC13AQ9UPW8 1703 aa34.86■■■■□ 3.17
RNF40-205ENST00000563909 BICRAQ9NZM4 1560 aa34.72■■■■□ 3.15
RNF40-205ENST00000563909 MYO15BQ96JP2 1530 aa34.41■■■■□ 3.1
RNF40-205ENST00000563909 CECR2Q9BXF3 1484 aa34.35■■■■□ 3.09
RNF40-205ENST00000563909 DNAJC5Q9H3Z4 198 aa34.27■■■■□ 3.08
RNF40-205ENST00000563909 CC2D2AQ9P2K1 1620 aa34.26■■■■□ 3.07
RNF40-205ENST00000563909 SHROOM4Q9ULL8 1493 aa34.1■■■■□ 3.05
RNF40-205ENST00000563909 EIF4G1Q04637 1599 aaKnown RBP33.95■■■■□ 3.03
RNF40-205ENST00000563909 SCRIBQ14160 1630 aa33.72■■■□□ 2.99
RNF40-205ENST00000563909 DCAF1Q9Y4B6 1507 aa33.63■■■□□ 2.97
RNF40-205ENST00000563909 ZCCHC6Q5VYS8 1495 aaKnown RBP33.62■■■□□ 2.97
RNF40-205ENST00000563909 CUX2O14529 1486 aa33.12■■■□□ 2.89
RNF40-205ENST00000563909 ERCC6Q03468 1493 aa32.91■■■□□ 2.86
RNF40-205ENST00000563909 NCAPD3P42695 1498 aa32.58■■■□□ 2.81
RNF40-205ENST00000563909 TRIM41Q8WV44 630 aa32.42■■■□□ 2.78
RNF40-205ENST00000563909 NESP48681 1621 aa32.4■■■□□ 2.78
RNF40-205ENST00000563909 ATAD2BQ9ULI0 1458 aa32.35■■■□□ 2.77
RNF40-205ENST00000563909 HMGXB3Q12766 1538 aa32.2■■■□□ 2.74
RNF40-205ENST00000563909 SMARCA2P51531 1590 aa32.18■■■□□ 2.74
RNF40-205ENST00000563909 THOC2Q8NI27 1593 aaKnown RBP32.18■■■□□ 2.74
RNF40-205ENST00000563909 SMARCA4P51532 1647 aa32.04■■■□□ 2.72
RNF40-205ENST00000563909 BAZ1BQ9UIG0 1483 aaKnown RBP31.99■■■□□ 2.71
RNF40-205ENST00000563909 LAMC3Q9Y6N6 1575 aa31.96■■■□□ 2.71
RNF40-205ENST00000563909 KIF21AQ7Z4S6 1674 aa31.89■■■□□ 2.7
RNF40-205ENST00000563909 PDS5BQ9NTI5 1447 aa31.87■■■□□ 2.69
RNF40-205ENST00000563909 BAZ1AQ9NRL2 1556 aaPredicted RBP31.75■■■□□ 2.67
RNF40-205ENST00000563909 PEG3Q9GZU2 1588 aa31.71■■■□□ 2.67
RNF40-205ENST00000563909 MRC2Q9UBG0 1479 aa31.62■■■□□ 2.65
RNF40-205ENST00000563909 CADPSQ9ULU8 1353 aa31.56■■■□□ 2.64
RNF40-205ENST00000563909 OSCARQ8IYS5 282 aa31.55■■■□□ 2.64
RNF40-205ENST00000563909 WDR62O43379 1518 aa31.54■■■□□ 2.64
RNF40-205ENST00000563909 MROH2BQ7Z745 1585 aa31.48■■■□□ 2.63
RNF40-205ENST00000563909 CEP164Q9UPV0 1460 aa31.31■■■□□ 2.6
RNF40-205ENST00000563909 FANCD2Q9BXW9 1451 aa31.21■■■□□ 2.59
RNF40-205ENST00000563909 RIMBP3CA6NJZ7 1639 aa31.15■■■□□ 2.58
RNF40-205ENST00000563909 RIMBP3BA6NNM3 1639 aa31.15■■■□□ 2.58
RNF40-205ENST00000563909 RIMBP3Q9UFD9 1639 aa31.15■■■□□ 2.58
RNF40-205ENST00000563909 WIZO95785 1651 aa31.04■■■□□ 2.56
RNF40-205ENST00000563909 URB2Q14146 1524 aaKnown RBP31■■■□□ 2.55
RNF40-205ENST00000563909 CFTRP13569 1480 aa30.98■■■□□ 2.55
RNF40-205ENST00000563909 ARHGEF11O15085 1522 aa30.96■■■□□ 2.55
RNF40-205ENST00000563909 CYB5RLQ6IPT4 315 aa30.9■■■□□ 2.54
RNF40-205ENST00000563909 TRHP20396 242 aaPredicted RBP30.89■■■□□ 2.54
RNF40-205ENST00000563909 ZNF608Q9ULD9 1512 aaPredicted RBP30.79■■■□□ 2.52
RNF40-205ENST00000563909 IFT140Q96RY7 1462 aa30.72■■■□□ 2.51
RNF40-205ENST00000563909 AEBP2Q6ZN18 517 aaPredicted RBP30.68■■■□□ 2.5
RNF40-205ENST00000563909 ARAP1Q96P48 1450 aa30.6■■■□□ 2.49
RNF40-205ENST00000563909 TOP2AP11388 1531 aaKnown RBP30.56■■■□□ 2.48
RNF40-205ENST00000563909 EIF4G3O43432 1585 aaKnown RBP30.52■■■□□ 2.48
RNF40-205ENST00000563909 RSF1Q96T23 1441 aaPredicted RBP30.5■■■□□ 2.47
RNF40-205ENST00000563909 TOPBP1Q92547 1522 aa30.49■■■□□ 2.47
RNF40-205ENST00000563909 PRDM2Q13029 1718 aa30.48■■■□□ 2.47
RNF40-205ENST00000563909 FBLN2P98095 1184 aa30.48■■■□□ 2.47
RNF40-205ENST00000563909 CHD1O14646 1710 aa30.46■■■□□ 2.47
RNF40-205ENST00000563909 AQRO60306 1485 aaKnown RBP eCLIP30.42■■■□□ 2.463e-8■■■■□ 19.7
RNF40-205ENST00000563909 ABCC8Q09428 1581 aa30.36■■■□□ 2.45
RNF40-205ENST00000563909 CCDC88BA6NC98 1476 aa30.29■■■□□ 2.44
RNF40-205ENST00000563909 TARBP1Q13395 1621 aaKnown RBP30.27■■■□□ 2.44
RNF40-205ENST00000563909 DNMBPQ6XZF7 1577 aa30.27■■■□□ 2.44
RNF40-205ENST00000563909 POLA1P09884 1462 aaPredicted RBP30.12■■■□□ 2.41
RNF40-205ENST00000563909 TDRD9Q8NDG6 1382 aaKnown RBP30.11■■■□□ 2.41
RNF40-205ENST00000563909 CLASP1Q7Z460 1538 aa30.1■■■□□ 2.41
RNF40-205ENST00000563909 RAD54L2Q9Y4B4 1467 aa30.07■■■□□ 2.4
RNF40-205ENST00000563909 CHMP7Q8WUX9 453 aaPredicted RBP30.07■■■□□ 2.4
RNF40-205ENST00000563909 SNAPC4Q5SXM2 1469 aa30.04■■■□□ 2.4
RNF40-205ENST00000563909 SOGA1O94964 1423 aa30.02■■■□□ 2.4
RNF40-205ENST00000563909 SYNJ1O43426 1573 aa30■■■□□ 2.39
RNF40-205ENST00000563909 GAPVD1Q14C86 1478 aa29.91■■■□□ 2.38
RNF40-205ENST00000563909 MAGI1Q96QZ7 1491 aaPredicted RBP29.9■■■□□ 2.38
RNF40-205ENST00000563909 SYNJ2O15056 1496 aa29.84■■■□□ 2.37
RNF40-205ENST00000563909 WDR97A6NE52 1622 aa29.84■■■□□ 2.37
RNF40-205ENST00000563909 GRIN2BQ13224 1484 aa29.82■■■□□ 2.36
RNF40-205ENST00000563909 FGD5Q6ZNL6 1462 aa29.8■■■□□ 2.36
RNF40-205ENST00000563909 CUX1P39880 1505 aa29.62■■■□□ 2.33
RNF40-205ENST00000563909 ERCC6L2Q5T890 1561 aa29.6■■■□□ 2.33
RNF40-205ENST00000563909 PBRM1Q86U86 1689 aa29.58■■■□□ 2.33
RNF40-205ENST00000563909 CEP170Q5SW79 1584 aa29.45■■■□□ 2.31
RNF40-205ENST00000563909 ILDR1Q86SU0 546 aaPredicted RBP29.44■■■□□ 2.3
RNF40-205ENST00000563909 KIF13AQ9H1H9 1805 aa29.43■■■□□ 2.3
RNF40-205ENST00000563909 GRIN2AQ12879 1464 aa29.43■■■□□ 2.3
RNF40-205ENST00000563909 ABCA5Q8WWZ7 1642 aa29.4■■■□□ 2.3
RNF40-205ENST00000563909 ABCA10Q8WWZ4 1543 aa29.4■■■□□ 2.3
RNF40-205ENST00000563909 NUP160Q12769 1436 aa29.36■■■□□ 2.29
RNF40-205ENST00000563909 KDM4FA0A1W2PPD8 638 aa29.32■■■□□ 2.28
RNF40-205ENST00000563909 FAM69CQ0P6D2 419 aa29.32■■■□□ 2.28
RNF40-205ENST00000563909 SHROOM2Q13796 1616 aa29.31■■■□□ 2.28
RNF40-205ENST00000563909 ADAMTS12P58397 1594 aa29.26■■■□□ 2.27
RNF40-205ENST00000563909 ABCC10Q5T3U5 1492 aa29.22■■■□□ 2.27
RNF40-205ENST00000563909 PRG4Q92954 1404 aaPredicted RBP29.21■■■□□ 2.27
RNF40-205ENST00000563909 NPM1P06748 294 aaKnown RBP eCLIP29.19■■■□□ 2.26
RNF40-205ENST00000563909 FHAD1B1AJZ9 1412 aa29.19■■■□□ 2.26
RNF40-205ENST00000563909 JPH4Q96JJ6 628 aa29.14■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms