RNA–Protein interactions for RNA: ENST00000562610.5

COMMD4-206, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-206ENST00000562610 MTUS2Q5JR59 1369 aa25.7■■□□□ 1.71
COMMD4-206ENST00000562610 RAPGEF3O95398 923 aa25.7■■□□□ 1.7
COMMD4-206ENST00000562610 TIAM1Q13009 1591 aa25.69■■□□□ 1.7
COMMD4-206ENST00000562610 ITSN2Q9NZM3 1697 aa25.65■■□□□ 1.7
COMMD4-206ENST00000562610 ZMYM4Q5VZL5 1548 aa25.65■■□□□ 1.7
COMMD4-206ENST00000562610 ARHGEF40Q8TER5 1519 aa25.65■■□□□ 1.7
COMMD4-206ENST00000562610 EFCAB2Q5VUJ9 269 aa25.65■■□□□ 1.7
COMMD4-206ENST00000562610 AEBP2Q6ZN18 517 aaPredicted RBP25.65■■□□□ 1.7
COMMD4-206ENST00000562610 SCAPERQ9BY12 1400 aa25.63■■□□□ 1.69
COMMD4-206ENST00000562610 SUPT6HQ7KZ85 1726 aaKnown RBP25.63■■□□□ 1.69
COMMD4-206ENST00000562610 POGZQ7Z3K3 1410 aa25.63■■□□□ 1.69
COMMD4-206ENST00000562610 ABCC1P33527 1531 aa25.61■■□□□ 1.69
COMMD4-206ENST00000562610 ZFYVE16Q7Z3T8 1539 aa25.58■■□□□ 1.69
COMMD4-206ENST00000562610 GPATCH8Q9UKJ3 1502 aaKnown RBP25.58■■□□□ 1.68
COMMD4-206ENST00000562610 SAMD9LQ8IVG5 1584 aa25.57■■□□□ 1.68
COMMD4-206ENST00000562610 ZNF518AQ6AHZ1 1483 aa25.56■■□□□ 1.68
COMMD4-206ENST00000562610 CCNB3Q8WWL7 1395 aa25.56■■□□□ 1.68
COMMD4-206ENST00000562610 KDM5CP41229 1560 aa25.54■■□□□ 1.68
COMMD4-206ENST00000562610 HECW2Q9P2P5 1572 aa25.54■■□□□ 1.68
COMMD4-206ENST00000562610 KDM4FA0A1W2PPD8 638 aa25.54■■□□□ 1.68
COMMD4-206ENST00000562610 MAGI2Q86UL8 1455 aa25.52■■□□□ 1.68
COMMD4-206ENST00000562610 MAP3K1Q13233 1512 aa25.52■■□□□ 1.68
COMMD4-206ENST00000562610 SYCP2Q9BX26 1530 aa25.52■■□□□ 1.68
COMMD4-206ENST00000562610 LRRC9Q6ZRR7 1453 aa25.51■■□□□ 1.67
COMMD4-206ENST00000562610 NCOA2Q15596 1464 aa25.5■■□□□ 1.67
COMMD4-206ENST00000562610 YEATS2Q9ULM3 1422 aa25.5■■□□□ 1.67
COMMD4-206ENST00000562610 ZNF777Q9ULD5 760 aaPredicted RBP25.49■■□□□ 1.67
COMMD4-206ENST00000562610 ARHGEF12Q9NZN5 1544 aa25.48■■□□□ 1.67
COMMD4-206ENST00000562610 BCORL1Q5H9F3 1711 aa25.48■■□□□ 1.67
COMMD4-206ENST00000562610 SIGLEC1Q9BZZ2 1709 aa25.48■■□□□ 1.67
COMMD4-206ENST00000562610 CFDP1Q9UEE9 299 aaPredicted RBP25.46■■□□□ 1.67
COMMD4-206ENST00000562610 TRAPPC8Q9Y2L5 1435 aa25.45■■□□□ 1.66
COMMD4-206ENST00000562610 ABCA6Q8N139 1617 aa25.45■■□□□ 1.66
COMMD4-206ENST00000562610 PLEKHH2Q8IVE3 1493 aa25.43■■□□□ 1.66
COMMD4-206ENST00000562610 DIP2CQ9Y2E4 1556 aa25.43■■□□□ 1.66
COMMD4-206ENST00000562610 ADAMTSL3P82987 1691 aa25.42■■□□□ 1.66
COMMD4-206ENST00000562610 ARID4BQ4LE39 1312 aaPredicted RBP25.42■■□□□ 1.66
COMMD4-206ENST00000562610 AFAP1Q8N556 730 aa25.42■■□□□ 1.66
COMMD4-206ENST00000562610 KIDINS220Q9ULH0 1771 aa25.41■■□□□ 1.66
COMMD4-206ENST00000562610 MYT1LQ9UL68 1186 aa25.41■■□□□ 1.66
COMMD4-206ENST00000562610 APLP2Q06481 763 aa25.4■■□□□ 1.66
COMMD4-206ENST00000562610 MADDQ8WXG6 1647 aa25.39■■□□□ 1.66
COMMD4-206ENST00000562610 C9orf84Q5VXU9 1444 aa25.38■■□□□ 1.65
COMMD4-206ENST00000562610 ATP10AO60312 1499 aa25.38■■□□□ 1.65
COMMD4-206ENST00000562610 MLH3Q9UHC1 1453 aa25.38■■□□□ 1.65
COMMD4-206ENST00000562610 RIMS1Q86UR5 1692 aaKnown RBP25.36■■□□□ 1.65
COMMD4-206ENST00000562610 CAMSAP2Q08AD1 1489 aa25.36■■□□□ 1.65
COMMD4-206ENST00000562610 KANK4Q5T7N3 995 aaPredicted RBP25.36■■□□□ 1.65
COMMD4-206ENST00000562610 KIAA1107Q9UPP5 1409 aa25.36■■□□□ 1.65
COMMD4-206ENST00000562610 FER1L4A9Z1Z3 1794 aa25.36■■□□□ 1.65
COMMD4-206ENST00000562610 INO80Q9ULG1 1556 aaPredicted RBP25.35■■□□□ 1.65
COMMD4-206ENST00000562610 ATP7AQ04656 1500 aa25.33■■□□□ 1.65
COMMD4-206ENST00000562610 HNRNPMP52272 730 aaKnown RBP eCLIP25.33■■□□□ 1.65
COMMD4-206ENST00000562610 REREQ9P2R6 1566 aa25.33■■□□□ 1.65
COMMD4-206ENST00000562610 ZNF644Q9H582 1327 aaPredicted RBP25.32■■□□□ 1.64
COMMD4-206ENST00000562610 MYOM3Q5VTT5 1437 aa25.28■■□□□ 1.64
COMMD4-206ENST00000562610 ADGBQ8N7X0 1667 aa25.27■■□□□ 1.64
COMMD4-206ENST00000562610 SPAG9O60271 1321 aaKnown RBP25.27■■□□□ 1.64
COMMD4-206ENST00000562610 MBD5Q9P267 1494 aa25.26■■□□□ 1.63
COMMD4-206ENST00000562610 CCDC141Q6ZP82 1450 aa25.25■■□□□ 1.63
COMMD4-206ENST00000562610 ARHGEF5Q12774 1597 aa25.25■■□□□ 1.63
COMMD4-206ENST00000562610 PTPRMP28827 1452 aa25.24■■□□□ 1.63
COMMD4-206ENST00000562610 MLECQ14165 292 aa25.23■■□□□ 1.63
COMMD4-206ENST00000562610 MIA2Q96PC5 1412 aa25.2■■□□□ 1.63
COMMD4-206ENST00000562610 PTPN23Q9H3S7 1636 aa25.2■■□□□ 1.62
COMMD4-206ENST00000562610 AGLP35573 1532 aa25.2■■□□□ 1.62
COMMD4-206ENST00000562610 PLXNC1O60486 1568 aa25.18■■□□□ 1.62
COMMD4-206ENST00000562610 CROCC2H7BZ55 1655 aa25.17■■□□□ 1.62
COMMD4-206ENST00000562610 A2MP01023 1474 aa25.15■■□□□ 1.62
COMMD4-206ENST00000562610 RTEL1-TNFRSF6BF6WH68 1400 aa25.14■■□□□ 1.62
COMMD4-206ENST00000562610 MAST1Q9Y2H9 1570 aa25.12■■□□□ 1.61
COMMD4-206ENST00000562610 FGD6Q6ZV73 1430 aa25.12■■□□□ 1.61
COMMD4-206ENST00000562610 RSPH4AQ5TD94 716 aa25.1■■□□□ 1.61
COMMD4-206ENST00000562610 PLPPR3Q6T4P5 718 aa25.09■■□□□ 1.61
COMMD4-206ENST00000562610 DNMT1P26358 1616 aaKnown RBP25.08■■□□□ 1.6
COMMD4-206ENST00000562610 C3P01024 1663 aa25.07■■□□□ 1.6
COMMD4-206ENST00000562610 TCOF1Q13428 1488 aaKnown RBP25.06■■□□□ 1.6
COMMD4-206ENST00000562610 CLTCQ00610 1675 aaKnown RBP25.06■■□□□ 1.6
COMMD4-206ENST00000562610 MROH2AA6NES4 1674 aa25.04■■□□□ 1.6
COMMD4-206ENST00000562610 TSPY4P0CV99 314 aa25.04■■□□□ 1.6
COMMD4-206ENST00000562610 TSPY10P0CW01 314 aa25.04■■□□□ 1.6
COMMD4-206ENST00000562610 ESF1Q9H501 851 aaKnown RBP25.01■■□□□ 1.59
COMMD4-206ENST00000562610 SHANK2Q9UPX8 1470 aa25.01■■□□□ 1.59
COMMD4-206ENST00000562610 PREX1Q8TCU6 1659 aa25.01■■□□□ 1.59
COMMD4-206ENST00000562610 DAPK1P53355 1430 aa24.99■■□□□ 1.59
COMMD4-206ENST00000562610 DHX29Q7Z478 1369 aaKnown RBP24.98■■□□□ 1.59
COMMD4-206ENST00000562610 CNTLNQ9NXG0 1405 aa24.97■■□□□ 1.59
COMMD4-206ENST00000562610 EIF2AK4Q9P2K8 1649 aaKnown RBP24.97■■□□□ 1.59
COMMD4-206ENST00000562610 ABCC5O15440 1437 aa24.96■■□□□ 1.59
COMMD4-206ENST00000562610 GGT6Q6P531 493 aa24.94■■□□□ 1.58
COMMD4-206ENST00000562610 PPARGC1BQ86YN6 1023 aaKnown RBP24.94■■□□□ 1.58
COMMD4-206ENST00000562610 LMTK3Q96Q04 1460 aa24.94■■□□□ 1.58
COMMD4-206ENST00000562610 CEBPAP49715 358 aaPredicted RBP24.93■■□□□ 1.58
COMMD4-206ENST00000562610 RNF17Q9BXT8 1623 aaKnown RBP24.93■■□□□ 1.58
COMMD4-206ENST00000562610 FAM50AQ14320 339 aaKnown RBP24.92■■□□□ 1.58
COMMD4-206ENST00000562610 DUOX2Q9NRD8 1548 aa24.91■■□□□ 1.58
COMMD4-206ENST00000562610 SETD1BQ9UPS6 1966 aaKnown RBP24.91■■□□□ 1.58
COMMD4-206ENST00000562610 KIF3BO15066 747 aa24.89■■□□□ 1.58
COMMD4-206ENST00000562610 KDM5DQ9BY66 1539 aa24.89■■□□□ 1.57
COMMD4-206ENST00000562610 FAM135AQ9P2D6 1515 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms