RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 PTPN23Q9H3S7 1636 aa19.41■□□□□ 0.7
GTF3C1-203ENST00000562609 NUP153P49790 1475 aaKnown RBP19.41■□□□□ 0.7
GTF3C1-203ENST00000562609 PLB1Q6P1J6 1458 aa19.41■□□□□ 0.7
GTF3C1-203ENST00000562609 NOP58Q9Y2X3 529 aaKnown RBP19.4■□□□□ 0.7
GTF3C1-203ENST00000562609 IL27Q8NEV9 243 aa19.39■□□□□ 0.7
GTF3C1-203ENST00000562609 ZNF644Q9H582 1327 aaPredicted RBP19.39■□□□□ 0.69
GTF3C1-203ENST00000562609 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.39■□□□□ 0.69
GTF3C1-203ENST00000562609 ARHGEF11O15085 1522 aa19.39■□□□□ 0.69
GTF3C1-203ENST00000562609 RTN4Q9NQC3 1192 aaKnown RBP19.38■□□□□ 0.69
GTF3C1-203ENST00000562609 NAIPQ13075 1403 aa19.36■□□□□ 0.69
GTF3C1-203ENST00000562609 HFM1A2PYH4 1435 aa19.36■□□□□ 0.69
GTF3C1-203ENST00000562609 CCER2I3L3R5 266 aa19.36■□□□□ 0.69
GTF3C1-203ENST00000562609 PAK3O75914 559 aaPredicted RBP19.35■□□□□ 0.69
GTF3C1-203ENST00000562609 RAPGEF6Q8TEU7 1601 aa19.35■□□□□ 0.69
GTF3C1-203ENST00000562609 PRG4Q92954 1404 aaPredicted RBP19.34■□□□□ 0.69
GTF3C1-203ENST00000562609 NUP160Q12769 1436 aa19.33■□□□□ 0.69
GTF3C1-203ENST00000562609 HIRIP3Q9BW71 556 aaPredicted RBP19.32■□□□□ 0.68
GTF3C1-203ENST00000562609 PPP1R15AO75807 674 aaPredicted RBP19.32■□□□□ 0.68
GTF3C1-203ENST00000562609 ANP32CO43423 234 aa19.31■□□□□ 0.68
GTF3C1-203ENST00000562609 ZNF777Q9ULD5 760 aaPredicted RBP19.31■□□□□ 0.68
GTF3C1-203ENST00000562609 CARMIL2Q6F5E8 1435 aa19.31■□□□□ 0.68
GTF3C1-203ENST00000562609 RTL5Q5HYW3 569 aaPredicted RBP19.29■□□□□ 0.68
GTF3C1-203ENST00000562609 UACAQ9BZF9 1416 aa19.27■□□□□ 0.68
GTF3C1-203ENST00000562609 TCOF1Q13428 1488 aaKnown RBP19.27■□□□□ 0.68
GTF3C1-203ENST00000562609 MIA2Q96PC5 1412 aa19.25■□□□□ 0.67
GTF3C1-203ENST00000562609 FOXD1Q16676 465 aa19.25■□□□□ 0.67
GTF3C1-203ENST00000562609 PPP4R2Q9NY27 417 aa19.25■□□□□ 0.67
GTF3C1-203ENST00000562609 KDM6BO15054 1643 aa19.25■□□□□ 0.67
GTF3C1-203ENST00000562609 CFDP1Q9UEE9 299 aaPredicted RBP19.24■□□□□ 0.67
GTF3C1-203ENST00000562609 TROQ12816 1431 aaPredicted RBP19.21■□□□□ 0.67
GTF3C1-203ENST00000562609 TONSLQ96HA7 1378 aa19.21■□□□□ 0.67
GTF3C1-203ENST00000562609 HNRNPUQ00839 825 aaKnown RBP eCLIP19.21■□□□□ 0.67
GTF3C1-203ENST00000562609 KIF14Q15058 1648 aa19.2■□□□□ 0.66
GTF3C1-203ENST00000562609 PLEKHD1A6NEE1 506 aa19.2■□□□□ 0.66
GTF3C1-203ENST00000562609 DAPK1P53355 1430 aa19.19■□□□□ 0.66
GTF3C1-203ENST00000562609 ABCC5O15440 1437 aa19.18■□□□□ 0.66
GTF3C1-203ENST00000562609 B4GALNT3Q6L9W6 998 aa19.18■□□□□ 0.66
GTF3C1-203ENST00000562609 CHD1O14646 1710 aa19.16■□□□□ 0.66
GTF3C1-203ENST00000562609 PTPRGP23470 1445 aa19.16■□□□□ 0.66
GTF3C1-203ENST00000562609 MPHOSPH9Q99550 1183 aa19.15■□□□□ 0.66
GTF3C1-203ENST00000562609 ATP10BO94823 1461 aa19.15■□□□□ 0.66
GTF3C1-203ENST00000562609 GPATCH8Q9UKJ3 1502 aaKnown RBP19.14■□□□□ 0.65
GTF3C1-203ENST00000562609 TIMELESSQ9UNS1 1208 aa19.14■□□□□ 0.65
GTF3C1-203ENST00000562609 DENND4BO75064 1496 aaPredicted RBP19.14■□□□□ 0.65
GTF3C1-203ENST00000562609 GCC2Q8IWJ2 1684 aa19.12■□□□□ 0.65
GTF3C1-203ENST00000562609 IPO9Q96P70 1041 aaKnown RBP19.11■□□□□ 0.65
GTF3C1-203ENST00000562609 CAMSAP2Q08AD1 1489 aa19.11■□□□□ 0.65
GTF3C1-203ENST00000562609 ABCA8O94911 1581 aa19.11■□□□□ 0.65
GTF3C1-203ENST00000562609 ANP32AP39687 249 aaKnown RBP19.1■□□□□ 0.65
GTF3C1-203ENST00000562609 ZBTB47Q9UFB7 747 aaPredicted RBP19.1■□□□□ 0.65
GTF3C1-203ENST00000562609 DNMT1P26358 1616 aaKnown RBP19.09■□□□□ 0.65
GTF3C1-203ENST00000562609 EIF5BO60841 1220 aaKnown RBP19.08■□□□□ 0.65
GTF3C1-203ENST00000562609 ERCC6L2Q5T890 1561 aa19.08■□□□□ 0.64
GTF3C1-203ENST00000562609 SLC4A1APQ9BWU0 796 aaKnown RBP19.07■□□□□ 0.64
GTF3C1-203ENST00000562609 AKNAQ7Z591 1439 aa19.07■□□□□ 0.64
GTF3C1-203ENST00000562609 HNRNPMP52272 730 aaKnown RBP eCLIP19.05■□□□□ 0.64
GTF3C1-203ENST00000562609 ROCK1Q13464 1354 aa19.04■□□□□ 0.64
GTF3C1-203ENST00000562609 WASHC2AQ641Q2 1341 aa19.03■□□□□ 0.64
GTF3C1-203ENST00000562609 ITSN2Q9NZM3 1697 aa19.02■□□□□ 0.64
GTF3C1-203ENST00000562609 NCOA1Q15788 1441 aa19.02■□□□□ 0.63
GTF3C1-203ENST00000562609 L3MBTL2Q969R5 705 aa19.01■□□□□ 0.63
GTF3C1-203ENST00000562609 ADCY10Q96PN6 1610 aa19.01■□□□□ 0.63
GTF3C1-203ENST00000562609 CDC42BPAQ5VT25 1732 aa19■□□□□ 0.63
GTF3C1-203ENST00000562609 ABCC10Q5T3U5 1492 aa19■□□□□ 0.63
GTF3C1-203ENST00000562609 KDM5BQ9UGL1 1544 aa18.98■□□□□ 0.63
GTF3C1-203ENST00000562609 C11orf95C9JLR9 678 aaPredicted RBP18.97■□□□□ 0.63
GTF3C1-203ENST00000562609 TSPY4P0CV99 314 aa18.96■□□□□ 0.63
GTF3C1-203ENST00000562609 TSPY10P0CW01 314 aa18.96■□□□□ 0.63
GTF3C1-203ENST00000562609 NEFMP07197 916 aa18.95■□□□□ 0.62
GTF3C1-203ENST00000562609 PKNOX2Q96KN3 472 aa18.95■□□□□ 0.62
GTF3C1-203ENST00000562609 ANKRD30BQ9BXX2 1392 aa18.95■□□□□ 0.62
GTF3C1-203ENST00000562609 ANKRD30AQ9BXX3 1397 aa18.94■□□□□ 0.62
GTF3C1-203ENST00000562609 BRPF3Q9ULD4 1205 aa18.93■□□□□ 0.62
GTF3C1-203ENST00000562609 WASHC2CQ9Y4E1 1318 aa18.92■□□□□ 0.62
GTF3C1-203ENST00000562609 PKD2Q13563 968 aa18.92■□□□□ 0.62
GTF3C1-203ENST00000562609 SHROOM2Q13796 1616 aa18.92■□□□□ 0.62
GTF3C1-203ENST00000562609 ANKRD50Q9ULJ7 1429 aa18.91■□□□□ 0.62
GTF3C1-203ENST00000562609 C9orf84Q5VXU9 1444 aa18.91■□□□□ 0.62
GTF3C1-203ENST00000562609 LAS1LQ9Y4W2 734 aaKnown RBP18.91■□□□□ 0.62
GTF3C1-203ENST00000562609 PZPP20742 1482 aa18.9■□□□□ 0.62
GTF3C1-203ENST00000562609 HSPA5P11021 654 aaKnown RBP18.9■□□□□ 0.62
GTF3C1-203ENST00000562609 NBPF8Q3BBV2 869 aa18.9■□□□□ 0.62
GTF3C1-203ENST00000562609 USP35Q9P2H5 1018 aa18.89■□□□□ 0.61
GTF3C1-203ENST00000562609 CROCC2H7BZ55 1655 aa18.88■□□□□ 0.61
GTF3C1-203ENST00000562609 ADGBQ8N7X0 1667 aa18.88■□□□□ 0.61
GTF3C1-203ENST00000562609 ZNF326Q5BKZ1 582 aaKnown RBP18.88■□□□□ 0.61
GTF3C1-203ENST00000562609 NUP155O75694 1391 aa18.87■□□□□ 0.61
GTF3C1-203ENST00000562609 ADGRL2O95490 1459 aa18.87■□□□□ 0.61
GTF3C1-203ENST00000562609 CDC42BPBQ9Y5S2 1711 aa18.86■□□□□ 0.61
GTF3C1-203ENST00000562609 RPRD2Q5VT52 1461 aaKnown RBP18.86■□□□□ 0.61
GTF3C1-203ENST00000562609 KIF15Q9NS87 1388 aa18.85■□□□□ 0.61
GTF3C1-203ENST00000562609 TTC37Q6PGP7 1564 aa18.85■□□□□ 0.61
GTF3C1-203ENST00000562609 MBD5Q9P267 1494 aa18.84■□□□□ 0.61
GTF3C1-203ENST00000562609 SAMD9LQ8IVG5 1584 aa18.84■□□□□ 0.61
GTF3C1-203ENST00000562609 ABCC2Q92887 1545 aa18.84■□□□□ 0.61
GTF3C1-203ENST00000562609 NPM2Q86SE8 214 aaKnown RBP18.84■□□□□ 0.61
GTF3C1-203ENST00000562609 EIF4G2P78344 907 aaKnown RBP eCLIP18.83■□□□□ 0.6
GTF3C1-203ENST00000562609 ARHGAP5Q13017 1502 aa18.83■□□□□ 0.6
GTF3C1-203ENST00000562609 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.83■□□□□ 0.6
GTF3C1-203ENST00000562609 CCDC184Q52MB2 194 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms