RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PREX2Q70Z35 1606 aa14.83□□□□□ -0.04
LDLR-211ENST00000560173 ARHGAP5Q13017 1502 aa14.82□□□□□ -0.04
LDLR-211ENST00000560173 MAP3K1Q13233 1512 aa14.82□□□□□ -0.04
LDLR-211ENST00000560173 FRMPD1Q5SYB0 1578 aa14.82□□□□□ -0.04
LDLR-211ENST00000560173 EFCAB2Q5VUJ9 269 aa14.82□□□□□ -0.04
LDLR-211ENST00000560173 DENND4BO75064 1496 aaPredicted RBP14.81□□□□□ -0.04
LDLR-211ENST00000560173 CDC42BPBQ9Y5S2 1711 aa14.8□□□□□ -0.04
LDLR-211ENST00000560173 RAPGEF3O95398 923 aa14.8□□□□□ -0.04
LDLR-211ENST00000560173 GPATCH8Q9UKJ3 1502 aaKnown RBP14.8□□□□□ -0.04
LDLR-211ENST00000560173 CDC42BPAQ5VT25 1732 aa14.8□□□□□ -0.04
LDLR-211ENST00000560173 LRRC9Q6ZRR7 1453 aa14.79□□□□□ -0.04
LDLR-211ENST00000560173 RICTORQ6R327 1708 aa14.78□□□□□ -0.04
LDLR-211ENST00000560173 POGZQ7Z3K3 1410 aa14.78□□□□□ -0.04
LDLR-211ENST00000560173 SCAPERQ9BY12 1400 aa14.78□□□□□ -0.04
LDLR-211ENST00000560173 CCNB3Q8WWL7 1395 aa14.77□□□□□ -0.04
LDLR-211ENST00000560173 NCOA2Q15596 1464 aa14.76□□□□□ -0.05
LDLR-211ENST00000560173 SUPT6HQ7KZ85 1726 aaKnown RBP14.76□□□□□ -0.05
LDLR-211ENST00000560173 ABCC1P33527 1531 aa14.76□□□□□ -0.05
LDLR-211ENST00000560173 ZMYM4Q5VZL5 1548 aa14.76□□□□□ -0.05
LDLR-211ENST00000560173 KANK4Q5T7N3 995 aaPredicted RBP14.74□□□□□ -0.05
LDLR-211ENST00000560173 SAMD9LQ8IVG5 1584 aa14.73□□□□□ -0.05
LDLR-211ENST00000560173 ARHGEF12Q9NZN5 1544 aa14.73□□□□□ -0.05
LDLR-211ENST00000560173 ARHGEF40Q8TER5 1519 aa14.72□□□□□ -0.05
LDLR-211ENST00000560173 ITSN2Q9NZM3 1697 aa14.72□□□□□ -0.05
LDLR-211ENST00000560173 ZNF518AQ6AHZ1 1483 aa14.72□□□□□ -0.05
LDLR-211ENST00000560173 CFDP1Q9UEE9 299 aaPredicted RBP14.72□□□□□ -0.05
LDLR-211ENST00000560173 MAGI2Q86UL8 1455 aa14.71□□□□□ -0.05
LDLR-211ENST00000560173 APLP2Q06481 763 aa14.71□□□□□ -0.05
LDLR-211ENST00000560173 KDM5CP41229 1560 aa14.71□□□□□ -0.05
LDLR-211ENST00000560173 ADAMTSL3P82987 1691 aa14.71□□□□□ -0.06
LDLR-211ENST00000560173 TRAPPC8Q9Y2L5 1435 aa14.7□□□□□ -0.06
LDLR-211ENST00000560173 ZFYVE16Q7Z3T8 1539 aa14.7□□□□□ -0.06
LDLR-211ENST00000560173 SYCP2Q9BX26 1530 aa14.7□□□□□ -0.06
LDLR-211ENST00000560173 PLEKHH2Q8IVE3 1493 aa14.69□□□□□ -0.06
LDLR-211ENST00000560173 KIAA1107Q9UPP5 1409 aa14.69□□□□□ -0.06
LDLR-211ENST00000560173 ZNF777Q9ULD5 760 aaPredicted RBP14.69□□□□□ -0.06
LDLR-211ENST00000560173 YEATS2Q9ULM3 1422 aa14.68□□□□□ -0.06
LDLR-211ENST00000560173 AFAP1Q8N556 730 aa14.68□□□□□ -0.06
LDLR-211ENST00000560173 PTPRMP28827 1452 aa14.68□□□□□ -0.06
LDLR-211ENST00000560173 LMTK3Q96Q04 1460 aa14.66□□□□□ -0.06
LDLR-211ENST00000560173 ZNF644Q9H582 1327 aaPredicted RBP14.66□□□□□ -0.06
LDLR-211ENST00000560173 MLH3Q9UHC1 1453 aa14.65□□□□□ -0.06
LDLR-211ENST00000560173 MYOM3Q5VTT5 1437 aa14.65□□□□□ -0.06
LDLR-211ENST00000560173 CAMSAP2Q08AD1 1489 aa14.64□□□□□ -0.07
LDLR-211ENST00000560173 HNRNPMP52272 730 aaKnown RBP eCLIP14.64□□□□□ -0.07
LDLR-211ENST00000560173 MBD5Q9P267 1494 aa14.63□□□□□ -0.07
LDLR-211ENST00000560173 BCORL1Q5H9F3 1711 aa14.63□□□□□ -0.07
LDLR-211ENST00000560173 MIA2Q96PC5 1412 aa14.62□□□□□ -0.07
LDLR-211ENST00000560173 DIP2CQ9Y2E4 1556 aa14.62□□□□□ -0.07
LDLR-211ENST00000560173 ATP10AO60312 1499 aa14.62□□□□□ -0.07
LDLR-211ENST00000560173 ABCA6Q8N139 1617 aa14.61□□□□□ -0.07
LDLR-211ENST00000560173 MADDQ8WXG6 1647 aa14.61□□□□□ -0.07
LDLR-211ENST00000560173 C9orf84Q5VXU9 1444 aa14.6□□□□□ -0.07
LDLR-211ENST00000560173 SIGLEC1Q9BZZ2 1709 aa14.6□□□□□ -0.07
LDLR-211ENST00000560173 SPAG9O60271 1321 aaKnown RBP14.6□□□□□ -0.07
LDLR-211ENST00000560173 KIDINS220Q9ULH0 1771 aa14.6□□□□□ -0.07
LDLR-211ENST00000560173 INO80Q9ULG1 1556 aaPredicted RBP14.6□□□□□ -0.07
LDLR-211ENST00000560173 REREQ9P2R6 1566 aa14.59□□□□□ -0.07
LDLR-211ENST00000560173 CCDC141Q6ZP82 1450 aa14.58□□□□□ -0.08
LDLR-211ENST00000560173 ATP7AQ04656 1500 aa14.58□□□□□ -0.08
LDLR-211ENST00000560173 MYT1LQ9UL68 1186 aa14.58□□□□□ -0.08
LDLR-211ENST00000560173 ARHGEF5Q12774 1597 aa14.58□□□□□ -0.08
LDLR-211ENST00000560173 ARID4BQ4LE39 1312 aaPredicted RBP14.57□□□□□ -0.08
LDLR-211ENST00000560173 FGD6Q6ZV73 1430 aa14.57□□□□□ -0.08
LDLR-211ENST00000560173 RIMS1Q86UR5 1692 aaKnown RBP14.56□□□□□ -0.08
LDLR-211ENST00000560173 RSPH4AQ5TD94 716 aa14.55□□□□□ -0.08
LDLR-211ENST00000560173 PTPN23Q9H3S7 1636 aa14.55□□□□□ -0.08
LDLR-211ENST00000560173 RTEL1-TNFRSF6BF6WH68 1400 aa14.54□□□□□ -0.08
LDLR-211ENST00000560173 TCOF1Q13428 1488 aaKnown RBP14.54□□□□□ -0.08
LDLR-211ENST00000560173 AGLP35573 1532 aa14.53□□□□□ -0.08
LDLR-211ENST00000560173 PLXNC1O60486 1568 aa14.51□□□□□ -0.09
LDLR-211ENST00000560173 ILDR2Q71H61 639 aa14.51□□□□□ -0.09
LDLR-211ENST00000560173 A2MP01023 1474 aa14.5□□□□□ -0.09
LDLR-211ENST00000560173 SOCS7O14512 581 aa14.5□□□□□ -0.09
LDLR-211ENST00000560173 MAST1Q9Y2H9 1570 aa14.5□□□□□ -0.09
LDLR-211ENST00000560173 CERKQ8TCT0 537 aa14.49□□□□□ -0.09
LDLR-211ENST00000560173 ABCC5O15440 1437 aa14.49□□□□□ -0.09
LDLR-211ENST00000560173 ADGBQ8N7X0 1667 aa14.49□□□□□ -0.09
LDLR-211ENST00000560173 TSPY4P0CV99 314 aa14.48□□□□□ -0.09
LDLR-211ENST00000560173 TSPY10P0CW01 314 aa14.48□□□□□ -0.09
LDLR-211ENST00000560173 MLECQ14165 292 aa14.48□□□□□ -0.09
LDLR-211ENST00000560173 PPARGC1BQ86YN6 1023 aaKnown RBP14.48□□□□□ -0.09
LDLR-211ENST00000560173 SHANK2Q9UPX8 1470 aa14.48□□□□□ -0.09
LDLR-211ENST00000560173 DNMT1P26358 1616 aaKnown RBP14.48□□□□□ -0.09
LDLR-211ENST00000560173 DISP3Q9P2K9 1392 aa14.47□□□□□ -0.09
LDLR-211ENST00000560173 HSPA2P54652 639 aa14.47□□□□□ -0.09
LDLR-211ENST00000560173 DAPK1P53355 1430 aa14.47□□□□□ -0.09
LDLR-211ENST00000560173 CROCC2H7BZ55 1655 aa14.46□□□□□ -0.09
LDLR-211ENST00000560173 DHX29Q7Z478 1369 aaKnown RBP14.46□□□□□ -0.1
LDLR-211ENST00000560173 FER1L4A9Z1Z3 1794 aa14.45□□□□□ -0.1
LDLR-211ENST00000560173 FAM50AQ14320 339 aaKnown RBP14.43□□□□□ -0.1
LDLR-211ENST00000560173 SPATA31D1Q6ZQQ2 1576 aa14.4□□□□□ -0.1
LDLR-211ENST00000560173 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.39□□□□□ -0.11
LDLR-211ENST00000560173 KIF15Q9NS87 1388 aa14.39□□□□□ -0.11
LDLR-211ENST00000560173 PLPPR3Q6T4P5 718 aa14.39□□□□□ -0.11
LDLR-211ENST00000560173 DUOX2Q9NRD8 1548 aa14.39□□□□□ -0.11
LDLR-211ENST00000560173 CNTLNQ9NXG0 1405 aa14.39□□□□□ -0.11
LDLR-211ENST00000560173 ADGRL2O95490 1459 aa14.38□□□□□ -0.11
LDLR-211ENST00000560173 PREX1Q8TCU6 1659 aa14.38□□□□□ -0.11
LDLR-211ENST00000560173 RRBP1Q9P2E9 1410 aaKnown RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms