RNA–Protein interactions for RNA: ENST00000559276.5

USP3-212, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-212ENST00000559276 MYO5CQ9NQX4 1742 aa9.66□□□□□ -0.86
USP3-212ENST00000559276 MAGI2Q86UL8 1455 aa9.66□□□□□ -0.86
USP3-212ENST00000559276 SCAPERQ9BY12 1400 aa9.65□□□□□ -0.86
USP3-212ENST00000559276 ARID4BQ4LE39 1312 aaPredicted RBP9.64□□□□□ -0.87
USP3-212ENST00000559276 UBTFP17480 764 aaKnown RBP9.64□□□□□ -0.87
USP3-212ENST00000559276 TROQ12816 1431 aaPredicted RBP9.63□□□□□ -0.87
USP3-212ENST00000559276 CDC42BPBQ9Y5S2 1711 aa9.62□□□□□ -0.87
USP3-212ENST00000559276 FER1L4A9Z1Z3 1794 aa9.62□□□□□ -0.87
USP3-212ENST00000559276 KDM5CP41229 1560 aa9.62□□□□□ -0.87
USP3-212ENST00000559276 ARHGEF12Q9NZN5 1544 aa9.61□□□□□ -0.87
USP3-212ENST00000559276 ATP10AO60312 1499 aa9.6□□□□□ -0.87
USP3-212ENST00000559276 ATP1B4Q9UN42 357 aaPredicted RBP9.6□□□□□ -0.87
USP3-212ENST00000559276 DIP2CQ9Y2E4 1556 aa9.59□□□□□ -0.87
USP3-212ENST00000559276 C9orf84Q5VXU9 1444 aa9.59□□□□□ -0.87
USP3-212ENST00000559276 EFCAB2Q5VUJ9 269 aa9.59□□□□□ -0.87
USP3-212ENST00000559276 ARHGAP5Q13017 1502 aa9.59□□□□□ -0.87
USP3-212ENST00000559276 PREX2Q70Z35 1606 aa9.59□□□□□ -0.87
USP3-212ENST00000559276 ZNF518AQ6AHZ1 1483 aa9.59□□□□□ -0.87
USP3-212ENST00000559276 CASKIN1Q8WXD9 1431 aa9.58□□□□□ -0.88
USP3-212ENST00000559276 ABCA6Q8N139 1617 aa9.58□□□□□ -0.88
USP3-212ENST00000559276 HSPA2P54652 639 aa9.58□□□□□ -0.88
USP3-212ENST00000559276 AFAP1Q8N556 730 aa9.58□□□□□ -0.88
USP3-212ENST00000559276 CDC42BPAQ5VT25 1732 aa9.58□□□□□ -0.88
USP3-212ENST00000559276 ABCC1P33527 1531 aa9.57□□□□□ -0.88
USP3-212ENST00000559276 MLECQ14165 292 aa9.57□□□□□ -0.88
USP3-212ENST00000559276 FBXO41Q8TF61 875 aa9.57□□□□□ -0.88
USP3-212ENST00000559276 CDK11AQ9UQ88 783 aaPredicted RBP9.57□□□□□ -0.88
USP3-212ENST00000559276 REREQ9P2R6 1566 aa9.57□□□□□ -0.88
USP3-212ENST00000559276 ITSN2Q9NZM3 1697 aa9.57□□□□□ -0.88
USP3-212ENST00000559276 TRAPPC8Q9Y2L5 1435 aa9.56□□□□□ -0.88
USP3-212ENST00000559276 CLIP1P30622 1438 aa9.56□□□□□ -0.88
USP3-212ENST00000559276 KIDINS220Q9ULH0 1771 aa9.55□□□□□ -0.88
USP3-212ENST00000559276 PREX1Q8TCU6 1659 aa9.55□□□□□ -0.88
USP3-212ENST00000559276 CCDC18Q5T9S5 1454 aa9.55□□□□□ -0.88
USP3-212ENST00000559276 MLH3Q9UHC1 1453 aa9.55□□□□□ -0.88
USP3-212ENST00000559276 PLPPR3Q6T4P5 718 aa9.55□□□□□ -0.88
USP3-212ENST00000559276 CEBPAP49715 358 aaPredicted RBP9.54□□□□□ -0.88
USP3-212ENST00000559276 STRCQ7RTU9 1775 aa9.54□□□□□ -0.88
USP3-212ENST00000559276 FYCO1Q9BQS8 1478 aa9.53□□□□□ -0.88
USP3-212ENST00000559276 AGLP35573 1532 aa9.53□□□□□ -0.88
USP3-212ENST00000559276 C3P01024 1663 aa9.53□□□□□ -0.88
USP3-212ENST00000559276 SAMD9LQ8IVG5 1584 aa9.53□□□□□ -0.88
USP3-212ENST00000559276 GPATCH8Q9UKJ3 1502 aaKnown RBP9.51□□□□□ -0.89
USP3-212ENST00000559276 SYCP2Q9BX26 1530 aa9.49□□□□□ -0.89
USP3-212ENST00000559276 INO80Q9ULG1 1556 aaPredicted RBP9.48□□□□□ -0.89
USP3-212ENST00000559276 SETD1BQ9UPS6 1966 aaKnown RBP9.48□□□□□ -0.89
USP3-212ENST00000559276 CERKQ8TCT0 537 aa9.47□□□□□ -0.89
USP3-212ENST00000559276 PLXNC1O60486 1568 aa9.46□□□□□ -0.89
USP3-212ENST00000559276 SUPT6HQ7KZ85 1726 aaKnown RBP9.46□□□□□ -0.89
USP3-212ENST00000559276 HNRNPMP52272 730 aaKnown RBP eCLIP9.46□□□□□ -0.9
USP3-212ENST00000559276 UHRF1BP1Q6BDS2 1440 aa9.46□□□□□ -0.9
USP3-212ENST00000559276 MROH2AA6NES4 1674 aa9.45□□□□□ -0.9
USP3-212ENST00000559276 MYT1LQ9UL68 1186 aa9.45□□□□□ -0.9
USP3-212ENST00000559276 KIAA1107Q9UPP5 1409 aa9.45□□□□□ -0.9
USP3-212ENST00000559276 ATP7AQ04656 1500 aa9.45□□□□□ -0.9
USP3-212ENST00000559276 TIAM1Q13009 1591 aa9.45□□□□□ -0.9
USP3-212ENST00000559276 ZNF777Q9ULD5 760 aaPredicted RBP9.44□□□□□ -0.9
USP3-212ENST00000559276 CLTCQ00610 1675 aaKnown RBP9.43□□□□□ -0.9
USP3-212ENST00000559276 MBD5Q9P267 1494 aa9.43□□□□□ -0.9
USP3-212ENST00000559276 CNTLNQ9NXG0 1405 aa9.43□□□□□ -0.9
USP3-212ENST00000559276 LTBP4Q8N2S1 1624 aa9.42□□□□□ -0.9
USP3-212ENST00000559276 SPAG9O60271 1321 aaKnown RBP9.42□□□□□ -0.9
USP3-212ENST00000559276 ZNF644Q9H582 1327 aaPredicted RBP9.42□□□□□ -0.9
USP3-212ENST00000559276 A2MP01023 1474 aa9.41□□□□□ -0.9
USP3-212ENST00000559276 PLEKHH2Q8IVE3 1493 aa9.41□□□□□ -0.9
USP3-212ENST00000559276 PTPRTO14522 1441 aa9.41□□□□□ -0.9
USP3-212ENST00000559276 NPATQ14207 1427 aa9.41□□□□□ -0.9
USP3-212ENST00000559276 NCOA1Q15788 1441 aa9.41□□□□□ -0.9
USP3-212ENST00000559276 ZMYM3Q14202 1370 aa9.41□□□□□ -0.9
USP3-212ENST00000559276 CCNB3Q8WWL7 1395 aa9.41□□□□□ -0.9
USP3-212ENST00000559276 CFDP1Q9UEE9 299 aaPredicted RBP9.41□□□□□ -0.9
USP3-212ENST00000559276 ADGBQ8N7X0 1667 aa9.41□□□□□ -0.9
USP3-212ENST00000559276 EHBP1L1Q8N3D4 1523 aa9.41□□□□□ -0.9
USP3-212ENST00000559276 MTUS2Q5JR59 1369 aa9.4□□□□□ -0.9
USP3-212ENST00000559276 CAMSAP1Q5T5Y3 1602 aa9.4□□□□□ -0.9
USP3-212ENST00000559276 PTPRKQ15262 1439 aa9.39□□□□□ -0.91
USP3-212ENST00000559276 CEP162Q5TB80 1403 aa9.39□□□□□ -0.91
USP3-212ENST00000559276 ZNF142P52746 1687 aaPredicted RBP9.39□□□□□ -0.91
USP3-212ENST00000559276 MYO3AQ8NEV4 1616 aa9.39□□□□□ -0.91
USP3-212ENST00000559276 DMRT2Q9Y5R5 561 aa9.39□□□□□ -0.91
USP3-212ENST00000559276 ESF1Q9H501 851 aaKnown RBP9.37□□□□□ -0.91
USP3-212ENST00000559276 RTEL1-TNFRSF6BF6WH68 1400 aa9.37□□□□□ -0.91
USP3-212ENST00000559276 CEP170BQ9Y4F5 1589 aaPredicted RBP9.37□□□□□ -0.91
USP3-212ENST00000559276 NCOA2Q15596 1464 aa9.36□□□□□ -0.91
USP3-212ENST00000559276 CAMSAP2Q08AD1 1489 aa9.35□□□□□ -0.91
USP3-212ENST00000559276 TCOF1Q13428 1488 aaKnown RBP9.35□□□□□ -0.91
USP3-212ENST00000559276 GGT6Q6P531 493 aa9.35□□□□□ -0.91
USP3-212ENST00000559276 DHX29Q7Z478 1369 aaKnown RBP9.35□□□□□ -0.91
USP3-212ENST00000559276 PLA2R1Q13018 1463 aa9.34□□□□□ -0.91
USP3-212ENST00000559276 NCKAP5LQ9HCH0 1330 aa9.34□□□□□ -0.91
USP3-212ENST00000559276 DNMT1P26358 1616 aaKnown RBP9.34□□□□□ -0.91
USP3-212ENST00000559276 IQSEC2Q5JU85 1478 aa9.34□□□□□ -0.91
USP3-212ENST00000559276 CCDC141Q6ZP82 1450 aa9.34□□□□□ -0.91
USP3-212ENST00000559276 PPP6R1Q9UPN7 881 aa9.33□□□□□ -0.92
USP3-212ENST00000559276 ARHGEF5Q12774 1597 aa9.33□□□□□ -0.92
USP3-212ENST00000559276 A2ML1A8K2U0 1454 aa9.32□□□□□ -0.92
USP3-212ENST00000559276 NEURL4Q96JN8 1562 aa9.32□□□□□ -0.92
USP3-212ENST00000559276 ZNF335Q9H4Z2 1342 aaPredicted RBP9.31□□□□□ -0.92
USP3-212ENST00000559276 FBXO31Q5XUX0 539 aaPredicted RBP9.31□□□□□ -0.92
USP3-212ENST00000559276 LRRC9Q6ZRR7 1453 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms