RNA–Protein interactions for RNA: ENST00000559222.5

CASC4-209, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 742 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-209ENST00000559222 PHLDB1Q86UU1 1377 aa29.67■■■□□ 2.34
CASC4-209ENST00000559222 RAPGEF3O95398 923 aa29.66■■■□□ 2.34
CASC4-209ENST00000559222 GPATCH8Q9UKJ3 1502 aaKnown RBP29.65■■■□□ 2.34
CASC4-209ENST00000559222 ADGRL1O94910 1474 aa29.64■■■□□ 2.34
CASC4-209ENST00000559222 LRRC9Q6ZRR7 1453 aa29.64■■■□□ 2.34
CASC4-209ENST00000559222 SUPT6HQ7KZ85 1726 aaKnown RBP29.63■■■□□ 2.33
CASC4-209ENST00000559222 MAP3K1Q13233 1512 aa29.63■■■□□ 2.33
CASC4-209ENST00000559222 DENND4BO75064 1496 aaPredicted RBP29.61■■■□□ 2.33
CASC4-209ENST00000559222 KANK4Q5T7N3 995 aaPredicted RBP29.61■■■□□ 2.33
CASC4-209ENST00000559222 SAMD9LQ8IVG5 1584 aa29.6■■■□□ 2.33
CASC4-209ENST00000559222 EFCAB2Q5VUJ9 269 aa29.59■■■□□ 2.33
CASC4-209ENST00000559222 SCAPERQ9BY12 1400 aa29.59■■■□□ 2.33
CASC4-209ENST00000559222 NCOA2Q15596 1464 aa29.59■■■□□ 2.33
CASC4-209ENST00000559222 ABCC1P33527 1531 aa29.58■■■□□ 2.33
CASC4-209ENST00000559222 ITSN2Q9NZM3 1697 aa29.57■■■□□ 2.32
CASC4-209ENST00000559222 ARHGEF12Q9NZN5 1544 aa29.55■■■□□ 2.32
CASC4-209ENST00000559222 POGZQ7Z3K3 1410 aa29.55■■■□□ 2.32
CASC4-209ENST00000559222 CCNB3Q8WWL7 1395 aa29.55■■■□□ 2.32
CASC4-209ENST00000559222 ZMYM4Q5VZL5 1548 aa29.53■■■□□ 2.32
CASC4-209ENST00000559222 ARHGEF40Q8TER5 1519 aa29.49■■■□□ 2.31
CASC4-209ENST00000559222 SYCP2Q9BX26 1530 aa29.49■■■□□ 2.31
CASC4-209ENST00000559222 ZNF777Q9ULD5 760 aaPredicted RBP29.47■■■□□ 2.31
CASC4-209ENST00000559222 TRAPPC8Q9Y2L5 1435 aa29.46■■■□□ 2.31
CASC4-209ENST00000559222 KDM5CP41229 1560 aa29.46■■■□□ 2.31
CASC4-209ENST00000559222 YEATS2Q9ULM3 1422 aa29.45■■■□□ 2.3
CASC4-209ENST00000559222 CFDP1Q9UEE9 299 aaPredicted RBP29.44■■■□□ 2.3
CASC4-209ENST00000559222 SIGLEC1Q9BZZ2 1709 aa29.44■■■□□ 2.3
CASC4-209ENST00000559222 ZNF518AQ6AHZ1 1483 aa29.42■■■□□ 2.3
CASC4-209ENST00000559222 ZFYVE16Q7Z3T8 1539 aa29.42■■■□□ 2.3
CASC4-209ENST00000559222 ZNF644Q9H582 1327 aaPredicted RBP29.42■■■□□ 2.3
CASC4-209ENST00000559222 AFAP1Q8N556 730 aa29.41■■■□□ 2.3
CASC4-209ENST00000559222 APLP2Q06481 763 aa29.4■■■□□ 2.3
CASC4-209ENST00000559222 HECW2Q9P2P5 1572 aa29.39■■■□□ 2.29
CASC4-209ENST00000559222 CAMSAP2Q08AD1 1489 aa29.36■■■□□ 2.29
CASC4-209ENST00000559222 HNRNPMP52272 730 aaKnown RBP eCLIP29.35■■■□□ 2.29
CASC4-209ENST00000559222 ABCA6Q8N139 1617 aa29.34■■■□□ 2.29
CASC4-209ENST00000559222 KDM4FA0A1W2PPD8 638 aa29.34■■■□□ 2.29
CASC4-209ENST00000559222 MAGI2Q86UL8 1455 aa29.34■■■□□ 2.29
CASC4-209ENST00000559222 KIDINS220Q9ULH0 1771 aa29.34■■■□□ 2.29
CASC4-209ENST00000559222 DIP2CQ9Y2E4 1556 aa29.32■■■□□ 2.28
CASC4-209ENST00000559222 PLEKHH2Q8IVE3 1493 aa29.32■■■□□ 2.28
CASC4-209ENST00000559222 MYOM3Q5VTT5 1437 aa29.32■■■□□ 2.28
CASC4-209ENST00000559222 KIAA1107Q9UPP5 1409 aa29.32■■■□□ 2.28
CASC4-209ENST00000559222 MBD5Q9P267 1494 aa29.3■■■□□ 2.28
CASC4-209ENST00000559222 INO80Q9ULG1 1556 aaPredicted RBP29.28■■■□□ 2.28
CASC4-209ENST00000559222 MLH3Q9UHC1 1453 aa29.28■■■□□ 2.28
CASC4-209ENST00000559222 BCORL1Q5H9F3 1711 aa29.24■■■□□ 2.27
CASC4-209ENST00000559222 ATP7AQ04656 1500 aa29.23■■■□□ 2.27
CASC4-209ENST00000559222 ATP10AO60312 1499 aa29.23■■■□□ 2.27
CASC4-209ENST00000559222 PTPN23Q9H3S7 1636 aa29.22■■■□□ 2.27
CASC4-209ENST00000559222 PPARGC1BQ86YN6 1023 aaKnown RBP29.21■■■□□ 2.27
CASC4-209ENST00000559222 C9orf84Q5VXU9 1444 aa29.2■■■□□ 2.27
CASC4-209ENST00000559222 MIA2Q96PC5 1412 aa29.2■■■□□ 2.27
CASC4-209ENST00000559222 MYT1LQ9UL68 1186 aa29.2■■■□□ 2.26
CASC4-209ENST00000559222 ARHGEF5Q12774 1597 aa29.2■■■□□ 2.26
CASC4-209ENST00000559222 ADAMTSL3P82987 1691 aa29.2■■■□□ 2.26
CASC4-209ENST00000559222 CCDC141Q6ZP82 1450 aa29.18■■■□□ 2.26
CASC4-209ENST00000559222 FGD6Q6ZV73 1430 aa29.17■■■□□ 2.26
CASC4-209ENST00000559222 SPAG9O60271 1321 aaKnown RBP29.17■■■□□ 2.26
CASC4-209ENST00000559222 REREQ9P2R6 1566 aa29.16■■■□□ 2.26
CASC4-209ENST00000559222 ARID4BQ4LE39 1312 aaPredicted RBP29.16■■■□□ 2.26
CASC4-209ENST00000559222 MADDQ8WXG6 1647 aa29.15■■■□□ 2.26
CASC4-209ENST00000559222 ADGBQ8N7X0 1667 aa29.14■■■□□ 2.26
CASC4-209ENST00000559222 TCOF1Q13428 1488 aaKnown RBP29.11■■■□□ 2.25
CASC4-209ENST00000559222 CROCC2H7BZ55 1655 aa29.11■■■□□ 2.25
CASC4-209ENST00000559222 PLXNC1O60486 1568 aa29.08■■■□□ 2.25
CASC4-209ENST00000559222 RIMS1Q86UR5 1692 aaKnown RBP29.08■■■□□ 2.25
CASC4-209ENST00000559222 MAST1Q9Y2H9 1570 aa29.06■■■□□ 2.24
CASC4-209ENST00000559222 FER1L4A9Z1Z3 1794 aa29.06■■■□□ 2.24
CASC4-209ENST00000559222 DNMT1P26358 1616 aaKnown RBP29.05■■■□□ 2.24
CASC4-209ENST00000559222 MLECQ14165 292 aa29.05■■■□□ 2.24
CASC4-209ENST00000559222 RTEL1-TNFRSF6BF6WH68 1400 aa29.04■■■□□ 2.24
CASC4-209ENST00000559222 AGLP35573 1532 aa29.04■■■□□ 2.24
CASC4-209ENST00000559222 A2MP01023 1474 aa29.03■■■□□ 2.24
CASC4-209ENST00000559222 ABCC5O15440 1437 aa29.02■■■□□ 2.24
CASC4-209ENST00000559222 DAPK1P53355 1430 aa28.99■■■□□ 2.23
CASC4-209ENST00000559222 RSPH4AQ5TD94 716 aa28.97■■■□□ 2.23
CASC4-209ENST00000559222 PTPRMP28827 1452 aa28.97■■■□□ 2.23
CASC4-209ENST00000559222 SHANK2Q9UPX8 1470 aa28.94■■■□□ 2.22
CASC4-209ENST00000559222 TSPY4P0CV99 314 aa28.92■■■□□ 2.22
CASC4-209ENST00000559222 TSPY10P0CW01 314 aa28.92■■■□□ 2.22
CASC4-209ENST00000559222 FAM50AQ14320 339 aaKnown RBP28.92■■■□□ 2.22
CASC4-209ENST00000559222 ILDR1Q86SU0 546 aaPredicted RBP28.91■■■□□ 2.22
CASC4-209ENST00000559222 DHX29Q7Z478 1369 aaKnown RBP28.88■■■□□ 2.21
CASC4-209ENST00000559222 PTPRKQ15262 1439 aa28.85■■■□□ 2.21
CASC4-209ENST00000559222 CLTCQ00610 1675 aaKnown RBP28.83■■■□□ 2.21
CASC4-209ENST00000559222 CHIC2Q9UKJ5 165 aa28.83■■■□□ 2.21
CASC4-209ENST00000559222 PLPPR3Q6T4P5 718 aa28.82■■■□□ 2.2
CASC4-209ENST00000559222 C3P01024 1663 aa28.82■■■□□ 2.2
CASC4-209ENST00000559222 KIF15Q9NS87 1388 aa28.8■■■□□ 2.2
CASC4-209ENST00000559222 DUOX2Q9NRD8 1548 aa28.79■■■□□ 2.2
CASC4-209ENST00000559222 RRBP1Q9P2E9 1410 aaKnown RBP28.79■■■□□ 2.2
CASC4-209ENST00000559222 EIF2AK4Q9P2K8 1649 aaKnown RBP28.79■■■□□ 2.2
CASC4-209ENST00000559222 ADGRL2O95490 1459 aa28.78■■■□□ 2.2
CASC4-209ENST00000559222 RNF17Q9BXT8 1623 aaKnown RBP28.78■■■□□ 2.2
CASC4-209ENST00000559222 GGT6Q6P531 493 aa28.77■■■□□ 2.2
CASC4-209ENST00000559222 RRP7BPQ9NSQ0 103 aa28.77■■■□□ 2.2
CASC4-209ENST00000559222 MROH1Q8NDA8 1641 aa28.76■■■□□ 2.2
CASC4-209ENST00000559222 KIF3BO15066 747 aa28.76■■■□□ 2.19
CASC4-209ENST00000559222 CEBPAP49715 358 aaPredicted RBP28.76■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms