RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 FANCIQ9NVI1 1328 aa15.4■□□□□ 0.06
USP3-206ENST00000558157 PTPN23Q9H3S7 1636 aa15.4■□□□□ 0.06
USP3-206ENST00000558157 ITSN2Q9NZM3 1697 aa15.39■□□□□ 0.05
USP3-206ENST00000558157 ABCC10Q5T3U5 1492 aa15.39■□□□□ 0.05
USP3-206ENST00000558157 CDC42BPAQ5VT25 1732 aa15.37■□□□□ 0.05
USP3-206ENST00000558157 NEFLP07196 543 aa15.37■□□□□ 0.05
USP3-206ENST00000558157 FAM50AQ14320 339 aaKnown RBP15.37■□□□□ 0.05
USP3-206ENST00000558157 FKBP8Q14318 412 aa15.36■□□□□ 0.05
USP3-206ENST00000558157 TTC37Q6PGP7 1564 aa15.36■□□□□ 0.05
USP3-206ENST00000558157 TCOF1Q13428 1488 aaKnown RBP15.35■□□□□ 0.05
USP3-206ENST00000558157 GPATCH8Q9UKJ3 1502 aaKnown RBP15.35■□□□□ 0.05
USP3-206ENST00000558157 MIA2Q96PC5 1412 aa15.35■□□□□ 0.05
USP3-206ENST00000558157 DHX57Q6P158 1386 aaKnown RBP15.34■□□□□ 0.05
USP3-206ENST00000558157 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.34■□□□□ 0.053e-6■□□□□ 10.3
USP3-206ENST00000558157 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.34■□□□□ 0.052e-7■■■□□ 16.1
USP3-206ENST00000558157 WDR7Q9Y4E6 1490 aa15.34■□□□□ 0.05
USP3-206ENST00000558157 PREX2Q70Z35 1606 aa15.32■□□□□ 0.04
USP3-206ENST00000558157 ITGAEP38570 1179 aa15.32■□□□□ 0.04
USP3-206ENST00000558157 CYB5RLQ6IPT4 315 aa15.32■□□□□ 0.04
USP3-206ENST00000558157 ASXL2Q76L83 1435 aa15.32■□□□□ 0.04
USP3-206ENST00000558157 MSH5O43196 834 aa15.3■□□□□ 0.04
USP3-206ENST00000558157 KCNH8Q96L42 1107 aa15.3■□□□□ 0.04
USP3-206ENST00000558157 MYO5CQ9NQX4 1742 aa15.3■□□□□ 0.04
USP3-206ENST00000558157 CDC42BPBQ9Y5S2 1711 aa15.3■□□□□ 0.04
USP3-206ENST00000558157 CAMSAP2Q08AD1 1489 aa15.29■□□□□ 0.04
USP3-206ENST00000558157 NPM1P06748 294 aaKnown RBP eCLIP15.29■□□□□ 0.04
USP3-206ENST00000558157 BCANQ96GW7 911 aa15.29■□□□□ 0.04
USP3-206ENST00000558157 CFDP1Q9UEE9 299 aaPredicted RBP15.28■□□□□ 0.04
USP3-206ENST00000558157 ZNF644Q9H582 1327 aaPredicted RBP15.26■□□□□ 0.03
USP3-206ENST00000558157 PTPRKQ15262 1439 aa15.26■□□□□ 0.03
USP3-206ENST00000558157 DNMT1P26358 1616 aaKnown RBP15.25■□□□□ 0.03
USP3-206ENST00000558157 ABCA9Q8IUA7 1624 aa15.25■□□□□ 0.03
USP3-206ENST00000558157 ARHGAP5Q13017 1502 aa15.24■□□□□ 0.03
USP3-206ENST00000558157 SAMD9LQ8IVG5 1584 aa15.24■□□□□ 0.03
USP3-206ENST00000558157 MAPKBP1O60336 1514 aa15.24■□□□□ 0.03
USP3-206ENST00000558157 ZNF777Q9ULD5 760 aaPredicted RBP15.24■□□□□ 0.03
USP3-206ENST00000558157 DAPK1P53355 1430 aa15.22■□□□□ 0.03
USP3-206ENST00000558157 CROCC2H7BZ55 1655 aa15.22■□□□□ 0.03
USP3-206ENST00000558157 ERICH6BQ5W0A0 696 aa15.22■□□□□ 0.03
USP3-206ENST00000558157 PLCH2O75038 1416 aa15.21■□□□□ 0.03
USP3-206ENST00000558157 ABCC5O15440 1437 aa15.2■□□□□ 0.02
USP3-206ENST00000558157 ARAP3Q8WWN8 1544 aa15.19■□□□□ 0.02
USP3-206ENST00000558157 CCER2I3L3R5 266 aa15.18■□□□□ 0.02
USP3-206ENST00000558157 SYCP2Q9BX26 1530 aa15.18■□□□□ 0.02
USP3-206ENST00000558157 ARHGEF5Q12774 1597 aa15.17■□□□□ 0.02
USP3-206ENST00000558157 SETD5Q9C0A6 1442 aa15.16■□□□□ 0.02
USP3-206ENST00000558157 GCC2Q8IWJ2 1684 aa15.16■□□□□ 0.02
USP3-206ENST00000558157 ADGBQ8N7X0 1667 aa15.16■□□□□ 0.02
USP3-206ENST00000558157 DEKP35659 375 aaKnown RBP15.16■□□□□ 0.02
USP3-206ENST00000558157 CHIC2Q9UKJ5 165 aa15.16■□□□□ 0.02
USP3-206ENST00000558157 RAB3GAP2Q9H2M9 1393 aa15.15■□□□□ 0.02
USP3-206ENST00000558157 ABCC1P33527 1531 aa15.15■□□□□ 0.02
USP3-206ENST00000558157 MBD5Q9P267 1494 aa15.15■□□□□ 0.02
USP3-206ENST00000558157 HFM1A2PYH4 1435 aa15.15■□□□□ 0.02
USP3-206ENST00000558157 AKNAQ7Z591 1439 aa15.14■□□□□ 0.01
USP3-206ENST00000558157 PLEKHH2Q8IVE3 1493 aa15.13■□□□□ 0.01
USP3-206ENST00000558157 DIP2BQ9P265 1576 aa15.13■□□□□ 0.01
USP3-206ENST00000558157 FANCAO15360 1455 aa15.13■□□□□ 0.01
USP3-206ENST00000558157 CCDC141Q6ZP82 1450 aa15.13■□□□□ 0.01
USP3-206ENST00000558157 SHANK2Q9UPX8 1470 aa15.13■□□□□ 0.01
USP3-206ENST00000558157 NAIPQ13075 1403 aa15.13■□□□□ 0.01
USP3-206ENST00000558157 HNRNPMP52272 730 aaKnown RBP eCLIP15.13■□□□□ 0.018e-7■■■■■ 27.1
USP3-206ENST00000558157 EFCAB2Q5VUJ9 269 aa15.13■□□□□ 0.01
USP3-206ENST00000558157 ARHGEF12Q9NZN5 1544 aa15.12■□□□□ 0.01
USP3-206ENST00000558157 GLI2P10070 1586 aa15.12■□□□□ 0.01
USP3-206ENST00000558157 MAP3K4Q9Y6R4 1608 aa15.12■□□□□ 0.01
USP3-206ENST00000558157 CD109Q6YHK3 1445 aa15.11■□□□□ 0.01
USP3-206ENST00000558157 KIAA1107Q9UPP5 1409 aa15.11■□□□□ 0.01
USP3-206ENST00000558157 ROCK1Q13464 1354 aa15.11■□□□□ 0.01
USP3-206ENST00000558157 ADGRL2O95490 1459 aa15.11■□□□□ 0.01
USP3-206ENST00000558157 RRP7BPQ9NSQ0 103 aa15.11■□□□□ 0.01
USP3-206ENST00000558157 C9orf84Q5VXU9 1444 aa15.1■□□□□ 0.01
USP3-206ENST00000558157 CFAP74Q9C0B2 1584 aa15.1■□□□□ 0.01
USP3-206ENST00000558157 KDM6BO15054 1643 aa15.09■□□□□ 0.01
USP3-206ENST00000558157 MAST1Q9Y2H9 1570 aa15.08■□□□□ 0
USP3-206ENST00000558157 ADGRL1O94910 1474 aa15.07■□□□□ 0
USP3-206ENST00000558157 NCOA1Q15788 1441 aa15.06■□□□□ 0
USP3-206ENST00000558157 TRAPPC8Q9Y2L5 1435 aa15.06■□□□□ 0
USP3-206ENST00000558157 KIF13AQ9H1H9 1805 aa15.05■□□□□ 0
USP3-206ENST00000558157 ANKRD30AQ9BXX3 1397 aa15.05■□□□□ -0
USP3-206ENST00000558157 TSPY4P0CV99 314 aa15.04■□□□□ -0
USP3-206ENST00000558157 TSPY10P0CW01 314 aa15.04■□□□□ -0
USP3-206ENST00000558157 RSPH4AQ5TD94 716 aa15.04■□□□□ -0
USP3-206ENST00000558157 PPP1R15AO75807 674 aaPredicted RBP15.04■□□□□ -0
USP3-206ENST00000558157 FAM69CQ0P6D2 419 aa15.03■□□□□ -0
USP3-206ENST00000558157 SCAPERQ9BY12 1400 aa15.03■□□□□ -0
USP3-206ENST00000558157 PLXNC1O60486 1568 aa15.02■□□□□ -0
USP3-206ENST00000558157 PPRC1Q5VV67 1664 aaKnown RBP15.02■□□□□ -0
USP3-206ENST00000558157 TSPOAP1O95153 1857 aa15.02■□□□□ -0
USP3-206ENST00000558157 TIMELESSQ9UNS1 1208 aa15.02■□□□□ -0
USP3-206ENST00000558157 NEO1Q92859 1461 aa15.02□□□□□ -0.01
USP3-206ENST00000558157 DNAJC5Q9H3Z4 198 aa15.02□□□□□ -0.01
USP3-206ENST00000558157 ZFYVE16Q7Z3T8 1539 aa15.01□□□□□ -0.01
USP3-206ENST00000558157 ANP32CO43423 234 aa15.01□□□□□ -0.01
USP3-206ENST00000558157 KIF15Q9NS87 1388 aa15□□□□□ -0.01
USP3-206ENST00000558157 INO80Q9ULG1 1556 aaPredicted RBP15□□□□□ -0.01
USP3-206ENST00000558157 DDX10Q13206 875 aaKnown RBP14.99□□□□□ -0.01
USP3-206ENST00000558157 ANO8Q9HCE9 1232 aaPredicted RBP14.99□□□□□ -0.01
USP3-206ENST00000558157 AFAP1Q8N556 730 aa14.98□□□□□ -0.01
USP3-206ENST00000558157 POGZQ7Z3K3 1410 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms