RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 NAIPQ13075 1403 aa18.44■□□□□ 0.54
SHMT2-233ENST00000557529 ROCK1Q13464 1354 aa18.44■□□□□ 0.54
SHMT2-233ENST00000557529 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.44■□□□□ 0.54
SHMT2-233ENST00000557529 PREX2Q70Z35 1606 aa18.44■□□□□ 0.54
SHMT2-233ENST00000557529 ZNF777Q9ULD5 760 aaPredicted RBP18.43■□□□□ 0.54
SHMT2-233ENST00000557529 TTC37Q6PGP7 1564 aa18.41■□□□□ 0.54
SHMT2-233ENST00000557529 WDR7Q9Y4E6 1490 aa18.41■□□□□ 0.54
SHMT2-233ENST00000557529 ACIN1Q9UKV3 1341 aaKnown RBP18.41■□□□□ 0.54
SHMT2-233ENST00000557529 NPM1P06748 294 aaKnown RBP eCLIP18.41■□□□□ 0.54
SHMT2-233ENST00000557529 KCNH8Q96L42 1107 aa18.41■□□□□ 0.54
SHMT2-233ENST00000557529 CHIC2Q9UKJ5 165 aa18.4■□□□□ 0.54
SHMT2-233ENST00000557529 GCC2Q8IWJ2 1684 aa18.39■□□□□ 0.54
SHMT2-233ENST00000557529 MYO5CQ9NQX4 1742 aa18.38■□□□□ 0.53
SHMT2-233ENST00000557529 CDC42BPBQ9Y5S2 1711 aa18.37■□□□□ 0.53
SHMT2-233ENST00000557529 ARHGAP5Q13017 1502 aa18.37■□□□□ 0.53
SHMT2-233ENST00000557529 RSPH4AQ5TD94 716 aa18.37■□□□□ 0.53
SHMT2-233ENST00000557529 RRP7BPQ9NSQ0 103 aa18.37■□□□□ 0.53
SHMT2-233ENST00000557529 PLCH2O75038 1416 aa18.37■□□□□ 0.53
SHMT2-233ENST00000557529 ARHGEF5Q12774 1597 aa18.37■□□□□ 0.53
SHMT2-233ENST00000557529 PLEKHH2Q8IVE3 1493 aa18.36■□□□□ 0.53
SHMT2-233ENST00000557529 SHANK2Q9UPX8 1470 aa18.36■□□□□ 0.53
SHMT2-233ENST00000557529 ASXL2Q76L83 1435 aa18.36■□□□□ 0.53
SHMT2-233ENST00000557529 ADGRL2O95490 1459 aa18.36■□□□□ 0.53
SHMT2-233ENST00000557529 CROCC2H7BZ55 1655 aa18.35■□□□□ 0.53
SHMT2-233ENST00000557529 SAMD9LQ8IVG5 1584 aa18.35■□□□□ 0.53
SHMT2-233ENST00000557529 ARAP3Q8WWN8 1544 aa18.34■□□□□ 0.53
SHMT2-233ENST00000557529 ADGBQ8N7X0 1667 aa18.33■□□□□ 0.52
SHMT2-233ENST00000557529 KIAA1107Q9UPP5 1409 aa18.33■□□□□ 0.52
SHMT2-233ENST00000557529 MBD5Q9P267 1494 aa18.32■□□□□ 0.52
SHMT2-233ENST00000557529 ANKRD30AQ9BXX3 1397 aa18.32■□□□□ 0.52
SHMT2-233ENST00000557529 EFCAB2Q5VUJ9 269 aa18.32■□□□□ 0.52
SHMT2-233ENST00000557529 TSPY4P0CV99 314 aa18.31■□□□□ 0.52
SHMT2-233ENST00000557529 TSPY10P0CW01 314 aa18.31■□□□□ 0.52
SHMT2-233ENST00000557529 NCOA1Q15788 1441 aa18.31■□□□□ 0.52
SHMT2-233ENST00000557529 CCDC141Q6ZP82 1450 aa18.31■□□□□ 0.52
SHMT2-233ENST00000557529 C9orf84Q5VXU9 1444 aa18.3■□□□□ 0.52
SHMT2-233ENST00000557529 ABCA9Q8IUA7 1624 aa18.3■□□□□ 0.52
SHMT2-233ENST00000557529 MAPKBP1O60336 1514 aa18.3■□□□□ 0.52
SHMT2-233ENST00000557529 RIMBP3CA6NJZ7 1639 aa18.29■□□□□ 0.52
SHMT2-233ENST00000557529 RIMBP3BA6NNM3 1639 aa18.29■□□□□ 0.52
SHMT2-233ENST00000557529 RIMBP3Q9UFD9 1639 aa18.29■□□□□ 0.52
SHMT2-233ENST00000557529 HNRNPMP52272 730 aaKnown RBP eCLIP18.29■□□□□ 0.52
SHMT2-233ENST00000557529 SYCP2Q9BX26 1530 aa18.27■□□□□ 0.51
SHMT2-233ENST00000557529 MAST1Q9Y2H9 1570 aa18.24■□□□□ 0.51
SHMT2-233ENST00000557529 KDM6BO15054 1643 aa18.24■□□□□ 0.51
SHMT2-233ENST00000557529 CYB5RLQ6IPT4 315 aa18.23■□□□□ 0.51
SHMT2-233ENST00000557529 ABCC1P33527 1531 aa18.23■□□□□ 0.51
SHMT2-233ENST00000557529 TRIM52Q96A61 297 aa18.22■□□□□ 0.51
SHMT2-233ENST00000557529 ANKRD50Q9ULJ7 1429 aa18.2■□□□□ 0.5
SHMT2-233ENST00000557529 ARHGEF12Q9NZN5 1544 aa18.2■□□□□ 0.5
SHMT2-233ENST00000557529 FANCAO15360 1455 aa18.2■□□□□ 0.5
SHMT2-233ENST00000557529 KIF15Q9NS87 1388 aa18.19■□□□□ 0.5
SHMT2-233ENST00000557529 TIMELESSQ9UNS1 1208 aa18.17■□□□□ 0.5
SHMT2-233ENST00000557529 PLXNC1O60486 1568 aa18.16■□□□□ 0.5
SHMT2-233ENST00000557529 MPHOSPH9Q99550 1183 aa18.16■□□□□ 0.5
SHMT2-233ENST00000557529 CD109Q6YHK3 1445 aa18.15■□□□□ 0.5
SHMT2-233ENST00000557529 TRAPPC8Q9Y2L5 1435 aa18.14■□□□□ 0.49
SHMT2-233ENST00000557529 CFAP74Q9C0B2 1584 aa18.14■□□□□ 0.49
SHMT2-233ENST00000557529 RTEL1-TNFRSF6BF6WH68 1400 aa18.13■□□□□ 0.49
SHMT2-233ENST00000557529 ADGRL1O94910 1474 aa18.12■□□□□ 0.49
SHMT2-233ENST00000557529 SIN3AQ96ST3 1273 aa18.11■□□□□ 0.49
SHMT2-233ENST00000557529 SPAG9O60271 1321 aaKnown RBP18.1■□□□□ 0.49
SHMT2-233ENST00000557529 SCAPERQ9BY12 1400 aa18.1■□□□□ 0.49
SHMT2-233ENST00000557529 DENND4BO75064 1496 aaPredicted RBP18.1■□□□□ 0.49
SHMT2-233ENST00000557529 DUOX2Q9NRD8 1548 aa18.09■□□□□ 0.49
SHMT2-233ENST00000557529 NEUROD1Q13562 356 aa18.09■□□□□ 0.49
SHMT2-233ENST00000557529 SLC4A1APQ9BWU0 796 aaKnown RBP18.09■□□□□ 0.49
SHMT2-233ENST00000557529 GLI2P10070 1586 aa18.09■□□□□ 0.49
SHMT2-233ENST00000557529 PZPP20742 1482 aa18.08■□□□□ 0.49
SHMT2-233ENST00000557529 KDM5DQ9BY66 1539 aa18.08■□□□□ 0.48
SHMT2-233ENST00000557529 ERBINQ96RT1 1412 aa18.07■□□□□ 0.48
SHMT2-233ENST00000557529 NEO1Q92859 1461 aa18.07■□□□□ 0.48
SHMT2-233ENST00000557529 AFAP1Q8N556 730 aa18.06■□□□□ 0.48
SHMT2-233ENST00000557529 NUP155O75694 1391 aa18.06■□□□□ 0.48
SHMT2-233ENST00000557529 ZFYVE16Q7Z3T8 1539 aa18.06■□□□□ 0.48
SHMT2-233ENST00000557529 TONSLQ96HA7 1378 aa18.04■□□□□ 0.48
SHMT2-233ENST00000557529 MAP3K4Q9Y6R4 1608 aa18.04■□□□□ 0.48
SHMT2-233ENST00000557529 ZNF518AQ6AHZ1 1483 aa18.03■□□□□ 0.48
SHMT2-233ENST00000557529 ATP7AQ04656 1500 aa18.03■□□□□ 0.48
SHMT2-233ENST00000557529 ANKRD30BQ9BXX2 1392 aa18.03■□□□□ 0.48
SHMT2-233ENST00000557529 INO80Q9ULG1 1556 aaPredicted RBP18.03■□□□□ 0.48
SHMT2-233ENST00000557529 UNC13BO14795 1591 aa18.02■□□□□ 0.47
SHMT2-233ENST00000557529 ZNF316A6NFI3 1004 aaPredicted RBP18.01■□□□□ 0.47
SHMT2-233ENST00000557529 POGZQ7Z3K3 1410 aa18■□□□□ 0.47
SHMT2-233ENST00000557529 DIP2BQ9P265 1576 aa17.99■□□□□ 0.47
SHMT2-233ENST00000557529 PKD2Q13563 968 aa17.99■□□□□ 0.47
SHMT2-233ENST00000557529 FAM69CQ0P6D2 419 aa17.98■□□□□ 0.47
SHMT2-233ENST00000557529 FOXD1Q16676 465 aa17.98■□□□□ 0.47
SHMT2-233ENST00000557529 PPP1R15AO75807 674 aaPredicted RBP17.97■□□□□ 0.47
SHMT2-233ENST00000557529 KDM5CP41229 1560 aa17.97■□□□□ 0.47
SHMT2-233ENST00000557529 MAGI2Q86UL8 1455 aa17.97■□□□□ 0.47
SHMT2-233ENST00000557529 FAM135AQ9P2D6 1515 aa17.97■□□□□ 0.47
SHMT2-233ENST00000557529 MYT1LQ9UL68 1186 aa17.96■□□□□ 0.47
SHMT2-233ENST00000557529 RPRD2Q5VT52 1461 aaKnown RBP17.95■□□□□ 0.46
SHMT2-233ENST00000557529 MLH3Q9UHC1 1453 aa17.95■□□□□ 0.46
SHMT2-233ENST00000557529 DHX29Q7Z478 1369 aaKnown RBP17.94■□□□□ 0.46
SHMT2-233ENST00000557529 IQGAP3Q86VI3 1631 aa17.93■□□□□ 0.46
SHMT2-233ENST00000557529 KIDINS220Q9ULH0 1771 aa17.92■□□□□ 0.46
SHMT2-233ENST00000557529 TEX14Q8IWB6 1497 aa17.92■□□□□ 0.46
SHMT2-233ENST00000557529 HECW2Q9P2P5 1572 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms