RNA–Protein interactions for RNA: ENST00000556142.5

HNRNPC-223, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), human

TSL 5 BASIC

Gene HNRNPC, Length 1,599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HNRNPC-223	ENST00000556142	ATP10B	O94823	1461 aa		14.24	□□□□□ -0.13
HNRNPC-223	ENST00000556142	FAM50A	Q14320	339 aa	Known RBP	14.22	□□□□□ -0.13
HNRNPC-223	ENST00000556142	TCOF1	Q13428	1488 aa	Known RBP	14.22	□□□□□ -0.13
HNRNPC-223	ENST00000556142	TRO	Q12816	1431 aa	Predicted RBP	14.22	□□□□□ -0.13
HNRNPC-223	ENST00000556142	CDK11A	Q9UQ88	783 aa	Predicted RBP	14.22	□□□□□ -0.13
HNRNPC-223	ENST00000556142	COL17A1	Q9UMD9	1497 aa	Predicted RBP	14.21	□□□□□ -0.14
HNRNPC-223	ENST00000556142	UACA	Q9BZF9	1416 aa		14.2	□□□□□ -0.14
HNRNPC-223	ENST00000556142	MIA2	Q96PC5	1412 aa		14.2	□□□□□ -0.14
HNRNPC-223	ENST00000556142	ITGAE	P38570	1179 aa		14.19	□□□□□ -0.14
HNRNPC-223	ENST00000556142	PTPRK	Q15262	1439 aa		14.18	□□□□□ -0.14
HNRNPC-223	ENST00000556142	PTPN23	Q9H3S7	1636 aa		14.18	□□□□□ -0.14
HNRNPC-223	ENST00000556142	UHRF1BP1L	A0JNW5	1464 aa		14.17	□□□□□ -0.14
HNRNPC-223	ENST00000556142	TEX14	Q8IWB6	1497 aa		14.17	□□□□□ -0.14
HNRNPC-223	ENST00000556142	DHX57	Q6P158	1386 aa	Known RBP	14.16	□□□□□ -0.14
HNRNPC-223	ENST00000556142	SETD5	Q9C0A6	1442 aa		14.15	□□□□□ -0.14
HNRNPC-223	ENST00000556142	MAP3K4	Q9Y6R4	1608 aa		14.15	□□□□□ -0.14
HNRNPC-223	ENST00000556142	PLEKHD1	A6NEE1	506 aa		14.14	□□□□□ -0.15
HNRNPC-223	ENST00000556142	RAB3GAP2	Q9H2M9	1393 aa		14.14	□□□□□ -0.15
HNRNPC-223	ENST00000556142	KIF14	Q15058	1648 aa		14.13	□□□□□ -0.15
HNRNPC-223	ENST00000556142	GPATCH8	Q9UKJ3	1502 aa	Known RBP	14.13	□□□□□ -0.15
HNRNPC-223	ENST00000556142	KDM5B	Q9UGL1	1544 aa		14.11	□□□□□ -0.15
HNRNPC-223	ENST00000556142	FBXO41	Q8TF61	875 aa		14.11	□□□□□ -0.15
HNRNPC-223	ENST00000556142	CLSPN	Q9HAW4	1339 aa		14.1	□□□□□ -0.15
HNRNPC-223	ENST00000556142	HFM1	A2PYH4	1435 aa		14.08	□□□□□ -0.16
HNRNPC-223	ENST00000556142	ZCCHC11	Q5TAX3	1644 aa	Known RBP	14.07	□□□□□ -0.16
HNRNPC-223	ENST00000556142	ZNF644	Q9H582	1327 aa	Predicted RBP	14.07	□□□□□ -0.16
HNRNPC-223	ENST00000556142	NAIP	Q13075	1403 aa		14.07	□□□□□ -0.16
HNRNPC-223	ENST00000556142	ABCC5	O15440	1437 aa		14.06	□□□□□ -0.16
HNRNPC-223	ENST00000556142	CFDP1	Q9UEE9	299 aa	Predicted RBP	14.05	□□□□□ -0.16
HNRNPC-223	ENST00000556142	AKNA	Q7Z591	1439 aa		14.04	□□□□□ -0.16
HNRNPC-223	ENST00000556142	ITSN2	Q9NZM3	1697 aa		14.04	□□□□□ -0.16
HNRNPC-223	ENST00000556142	DAPK1	P53355	1430 aa		14.04	□□□□□ -0.16
HNRNPC-223	ENST00000556142	WDR7	Q9Y4E6	1490 aa		14.04	□□□□□ -0.16
HNRNPC-223	ENST00000556142	CAMSAP2	Q08AD1	1489 aa		14.03	□□□□□ -0.16
HNRNPC-223	ENST00000556142	CDC42BPA	Q5VT25	1732 aa		14.03	□□□□□ -0.16
HNRNPC-223	ENST00000556142	DNMT1	P26358	1616 aa	Known RBP	14.02	□□□□□ -0.16
HNRNPC-223	ENST00000556142	ROCK1	Q13464	1354 aa		14.01	□□□□□ -0.17
HNRNPC-223	ENST00000556142	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	14	□□□□□ -0.17	1e-13	■■■□□ 15.2
HNRNPC-223	ENST00000556142	CD109	Q6YHK3	1445 aa		14	□□□□□ -0.17
HNRNPC-223	ENST00000556142	CHIC2	Q9UKJ5	165 aa		13.99	□□□□□ -0.17
HNRNPC-223	ENST00000556142	RRP7BP	Q9NSQ0	103 aa		13.98	□□□□□ -0.17
HNRNPC-223	ENST00000556142	GCC2	Q8IWJ2	1684 aa		13.97	□□□□□ -0.17
HNRNPC-223	ENST00000556142	KCNH8	Q96L42	1107 aa		13.96	□□□□□ -0.17
HNRNPC-223	ENST00000556142	PREX2	Q70Z35	1606 aa		13.96	□□□□□ -0.17
HNRNPC-223	ENST00000556142	TTC37	Q6PGP7	1564 aa		13.96	□□□□□ -0.17
HNRNPC-223	ENST00000556142	CDC42BPB	Q9Y5S2	1711 aa		13.95	□□□□□ -0.18
HNRNPC-223	ENST00000556142	ADGRL2	O95490	1459 aa		13.95	□□□□□ -0.18
HNRNPC-223	ENST00000556142	MBD5	Q9P267	1494 aa		13.95	□□□□□ -0.18
HNRNPC-223	ENST00000556142	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.95	□□□□□ -0.18
HNRNPC-223	ENST00000556142	SAMD9L	Q8IVG5	1584 aa		13.93	□□□□□ -0.18
HNRNPC-223	ENST00000556142	PTPRM	P28827	1452 aa		13.93	□□□□□ -0.18
HNRNPC-223	ENST00000556142	PLCH2	O75038	1416 aa		13.93	□□□□□ -0.18
HNRNPC-223	ENST00000556142	NCOA1	Q15788	1441 aa		13.93	□□□□□ -0.18
HNRNPC-223	ENST00000556142	ARHGEF5	Q12774	1597 aa		13.93	□□□□□ -0.18
HNRNPC-223	ENST00000556142	CROCC2	H7BZ55	1655 aa		13.92	□□□□□ -0.18
HNRNPC-223	ENST00000556142	SHANK2	Q9UPX8	1470 aa		13.92	□□□□□ -0.18
HNRNPC-223	ENST00000556142	ARAP3	Q8WWN8	1544 aa		13.91	□□□□□ -0.18
HNRNPC-223	ENST00000556142	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.9	□□□□□ -0.18	5e-7	■■■■□ 19.9
HNRNPC-223	ENST00000556142	RSPH4A	Q5TD94	716 aa		13.9	□□□□□ -0.18
HNRNPC-223	ENST00000556142	DENND4B	O75064	1496 aa	Predicted RBP	13.9	□□□□□ -0.18
HNRNPC-223	ENST00000556142	ADAMTSL3	P82987	1691 aa		13.9	□□□□□ -0.19
HNRNPC-223	ENST00000556142	KIAA1107	Q9UPP5	1409 aa		13.89	□□□□□ -0.19
HNRNPC-223	ENST00000556142	ACIN1	Q9UKV3	1341 aa	Known RBP	13.88	□□□□□ -0.19
HNRNPC-223	ENST00000556142	ADGB	Q8N7X0	1667 aa		13.88	□□□□□ -0.19
HNRNPC-223	ENST00000556142	MYO5C	Q9NQX4	1742 aa		13.88	□□□□□ -0.19
HNRNPC-223	ENST00000556142	ARHGAP5	Q13017	1502 aa		13.87	□□□□□ -0.19
HNRNPC-223	ENST00000556142	ANKRD30A	Q9BXX3	1397 aa		13.87	□□□□□ -0.19
HNRNPC-223	ENST00000556142	C9orf84	Q5VXU9	1444 aa		13.87	□□□□□ -0.19
HNRNPC-223	ENST00000556142	CCDC141	Q6ZP82	1450 aa		13.86	□□□□□ -0.19
HNRNPC-223	ENST00000556142	LMTK3	Q96Q04	1460 aa		13.86	□□□□□ -0.19
HNRNPC-223	ENST00000556142	SIN3A	Q96ST3	1273 aa		13.86	□□□□□ -0.19
HNRNPC-223	ENST00000556142	PLEKHH2	Q8IVE3	1493 aa		13.86	□□□□□ -0.19
HNRNPC-223	ENST00000556142	ARHGEF12	Q9NZN5	1544 aa		13.85	□□□□□ -0.19
HNRNPC-223	ENST00000556142	SCAF1	Q9H7N4	1312 aa	Known RBP	13.85	□□□□□ -0.19
HNRNPC-223	ENST00000556142	ABCA9	Q8IUA7	1624 aa		13.85	□□□□□ -0.19
HNRNPC-223	ENST00000556142	TSPY4	P0CV99	314 aa		13.84	□□□□□ -0.19
HNRNPC-223	ENST00000556142	TSPY10	P0CW01	314 aa		13.84	□□□□□ -0.19
HNRNPC-223	ENST00000556142	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.84	□□□□□ -0.19
HNRNPC-223	ENST00000556142	EFCAB2	Q5VUJ9	269 aa		13.84	□□□□□ -0.19
HNRNPC-223	ENST00000556142	SYCP2	Q9BX26	1530 aa		13.84	□□□□□ -0.19
HNRNPC-223	ENST00000556142	MAST1	Q9Y2H9	1570 aa		13.84	□□□□□ -0.19
HNRNPC-223	ENST00000556142	MPHOSPH9	Q99550	1183 aa		13.83	□□□□□ -0.2
HNRNPC-223	ENST00000556142	TIMELESS	Q9UNS1	1208 aa		13.83	□□□□□ -0.2
HNRNPC-223	ENST00000556142	BCORL1	Q5H9F3	1711 aa		13.82	□□□□□ -0.2
HNRNPC-223	ENST00000556142	MADD	Q8WXG6	1647 aa		13.82	□□□□□ -0.2
HNRNPC-223	ENST00000556142	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.82	□□□□□ -0.2
HNRNPC-223	ENST00000556142	RAPGEF3	O95398	923 aa		13.82	□□□□□ -0.2
HNRNPC-223	ENST00000556142	TRIM52	Q96A61	297 aa		13.82	□□□□□ -0.2
HNRNPC-223	ENST00000556142	ABCC1	P33527	1531 aa		13.81	□□□□□ -0.2
HNRNPC-223	ENST00000556142	ANKRD50	Q9ULJ7	1429 aa		13.81	□□□□□ -0.2
HNRNPC-223	ENST00000556142	DMRT2	Q9Y5R5	561 aa		13.8	□□□□□ -0.2
HNRNPC-223	ENST00000556142	PZP	P20742	1482 aa		13.79	□□□□□ -0.2
HNRNPC-223	ENST00000556142	TRAPPC8	Q9Y2L5	1435 aa		13.78	□□□□□ -0.2
HNRNPC-223	ENST00000556142	KIF15	Q9NS87	1388 aa		13.78	□□□□□ -0.2
HNRNPC-223	ENST00000556142	NEO1	Q92859	1461 aa		13.78	□□□□□ -0.2
HNRNPC-223	ENST00000556142	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.78	□□□□□ -0.2
HNRNPC-223	ENST00000556142	NEUROD1	Q13562	356 aa		13.78	□□□□□ -0.2
HNRNPC-223	ENST00000556142	HSPA2	P54652	639 aa		13.76	□□□□□ -0.21
HNRNPC-223	ENST00000556142	CERK	Q8TCT0	537 aa		13.76	□□□□□ -0.21
HNRNPC-223	ENST00000556142	FANCA	O15360	1455 aa		13.76	□□□□□ -0.21

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