RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 PDE4AP27815 886 aa22.16■■□□□ 1.14
SYNE3-204ENST00000555759 PLEKHD1A6NEE1 506 aa22.16■■□□□ 1.14
SYNE3-204ENST00000555759 TNNT3P45378 269 aaPredicted RBP22.14■■□□□ 1.14
SYNE3-204ENST00000555759 SOGA1O94964 1423 aa22.14■■□□□ 1.13
SYNE3-204ENST00000555759 CALD1Q05682 793 aaKnown RBP22.12■■□□□ 1.13
SYNE3-204ENST00000555759 IPO8O15397 1037 aaKnown RBP22.12■■□□□ 1.13
SYNE3-204ENST00000555759 ARHGAP35Q9NRY4 1499 aa22.11■■□□□ 1.13
SYNE3-204ENST00000555759 AMER1Q5JTC6 1135 aaPredicted RBP22.11■■□□□ 1.13
SYNE3-204ENST00000555759 FAM161AQ3B820 660 aa22.09■■□□□ 1.13
SYNE3-204ENST00000555759 ZBED9Q6R2W3 1325 aa22.09■■□□□ 1.13
SYNE3-204ENST00000555759 ARID3AQ99856 593 aa22.08■■□□□ 1.13
SYNE3-204ENST00000555759 HAP1P54257 671 aaPredicted RBP22.08■■□□□ 1.13
SYNE3-204ENST00000555759 SKOR2Q2VWA4 1001 aaPredicted RBP22.08■■□□□ 1.13
SYNE3-204ENST00000555759 CENPQQ7L2Z9 268 aaPredicted RBP22.08■■□□□ 1.12
SYNE3-204ENST00000555759 ROCK2O75116 1388 aaKnown RBP22.07■■□□□ 1.12
SYNE3-204ENST00000555759 PHLDB1Q86UU1 1377 aa22.07■■□□□ 1.12
SYNE3-204ENST00000555759 KCNJ4P48050 445 aa22.07■■□□□ 1.12
SYNE3-204ENST00000555759 DCAF11Q8TEB1 546 aa22.07■■□□□ 1.12
SYNE3-204ENST00000555759 FGD1P98174 961 aa22.06■■□□□ 1.12
SYNE3-204ENST00000555759 DHX57Q6P158 1386 aaKnown RBP22.05■■□□□ 1.12
SYNE3-204ENST00000555759 NPM1P06748 294 aaKnown RBP eCLIP22.03■■□□□ 1.12
SYNE3-204ENST00000555759 MFAP1P55081 439 aaKnown RBP22.03■■□□□ 1.12
SYNE3-204ENST00000555759 KANK4Q5T7N3 995 aaPredicted RBP22.03■■□□□ 1.12
SYNE3-204ENST00000555759 PHF14O94880 888 aa22.02■■□□□ 1.12
SYNE3-204ENST00000555759 NLRP13Q86W25 1043 aa22.02■■□□□ 1.12
SYNE3-204ENST00000555759 U2SURPO15042 1029 aaKnown RBP22.02■■□□□ 1.11
SYNE3-204ENST00000555759 GOLGA2Q08379 1002 aa22.02■■□□□ 1.11
SYNE3-204ENST00000555759 KCNH8Q96L42 1107 aa22.01■■□□□ 1.11
SYNE3-204ENST00000555759 HTATSF1O43719 755 aaKnown RBP22■■□□□ 1.11
SYNE3-204ENST00000555759 BAZ1AQ9NRL2 1556 aaPredicted RBP21.99■■□□□ 1.11
SYNE3-204ENST00000555759 CSPP1Q1MSJ5 1256 aa21.98■■□□□ 1.11
SYNE3-204ENST00000555759 OS9Q13438 667 aaPredicted RBP21.98■■□□□ 1.11
SYNE3-204ENST00000555759 FMN1Q68DA7 1419 aa21.97■■□□□ 1.11
SYNE3-204ENST00000555759 RRP1P56182 461 aaKnown RBP21.96■■□□□ 1.11
SYNE3-204ENST00000555759 MORC1Q86VD1 984 aa21.96■■□□□ 1.11
SYNE3-204ENST00000555759 CHMP7Q8WUX9 453 aaPredicted RBP21.95■■□□□ 1.1
SYNE3-204ENST00000555759 ZBTB7CA1YPR0 619 aa21.95■■□□□ 1.1
SYNE3-204ENST00000555759 BAZ1BQ9UIG0 1483 aaKnown RBP21.94■■□□□ 1.1
SYNE3-204ENST00000555759 ITPRIPQ8IWB1 547 aa21.93■■□□□ 1.1
SYNE3-204ENST00000555759 MPHOSPH9Q99550 1183 aa21.93■■□□□ 1.1
SYNE3-204ENST00000555759 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.92■■□□□ 1.1
SYNE3-204ENST00000555759 KIF15Q9NS87 1388 aa21.92■■□□□ 1.1
SYNE3-204ENST00000555759 KIAA1211Q6ZU35 1233 aa21.91■■□□□ 1.1
SYNE3-204ENST00000555759 PRKRIP1Q9H875 184 aaPredicted RBP21.91■■□□□ 1.1
SYNE3-204ENST00000555759 MYBBP1AQ9BQG0 1328 aaKnown RBP21.9■■□□□ 1.1
SYNE3-204ENST00000555759 CENPJQ9HC77 1338 aaPredicted RBP21.89■■□□□ 1.1
SYNE3-204ENST00000555759 TPM4P67936 248 aa21.89■■□□□ 1.1
SYNE3-204ENST00000555759 SLC4A3P48751 1232 aa21.89■■□□□ 1.09
SYNE3-204ENST00000555759 EXOC6Q8TAG9 804 aa21.89■■□□□ 1.09
SYNE3-204ENST00000555759 CARMIL1Q5VZK9 1371 aa21.89■■□□□ 1.09
SYNE3-204ENST00000555759 MAP7D2Q96T17 732 aa21.88■■□□□ 1.09
SYNE3-204ENST00000555759 DDX49Q9Y6V7 483 aaKnown RBP21.88■■□□□ 1.09
SYNE3-204ENST00000555759 ST18O60284 1047 aa21.87■■□□□ 1.09
SYNE3-204ENST00000555759 GOLGA6L1Q8N7Z2 621 aa21.87■■□□□ 1.09
SYNE3-204ENST00000555759 MTERF4Q7Z6M4 381 aaKnown RBP21.86■■□□□ 1.09
SYNE3-204ENST00000555759 FAM43AQ8N2R8 423 aa21.86■■□□□ 1.09
SYNE3-204ENST00000555759 PKD2Q13563 968 aa21.86■■□□□ 1.09
SYNE3-204ENST00000555759 NAP1L2Q9ULW6 460 aaPredicted RBP21.85■■□□□ 1.09
SYNE3-204ENST00000555759 L3MBTL2Q969R5 705 aa21.85■■□□□ 1.09
SYNE3-204ENST00000555759 NFKBIBQ15653 356 aa21.85■■□□□ 1.09
SYNE3-204ENST00000555759 CHMP5Q9NZZ3 219 aa21.84■■□□□ 1.09
SYNE3-204ENST00000555759 NACADO15069 1562 aa21.84■■□□□ 1.09
SYNE3-204ENST00000555759 CCDC88BA6NC98 1476 aa21.84■■□□□ 1.09
SYNE3-204ENST00000555759 PKNOX2Q96KN3 472 aa21.83■■□□□ 1.08
SYNE3-204ENST00000555759 POGKQ9P215 609 aa21.82■■□□□ 1.08
SYNE3-204ENST00000555759 CGNL1Q0VF96 1302 aa21.82■■□□□ 1.08
SYNE3-204ENST00000555759 SMC4Q9NTJ3 1288 aa21.79■■□□□ 1.08
SYNE3-204ENST00000555759 ANO8Q9HCE9 1232 aaPredicted RBP21.79■■□□□ 1.08
SYNE3-204ENST00000555759 FAM13BQ9NYF5 915 aa21.79■■□□□ 1.08
SYNE3-204ENST00000555759 MRE11P49959 708 aa21.79■■□□□ 1.08
SYNE3-204ENST00000555759 CRBNQ96SW2 442 aa21.79■■□□□ 1.08
SYNE3-204ENST00000555759 ZNF771Q7L3S4 317 aaPredicted RBP21.78■■□□□ 1.08
SYNE3-204ENST00000555759 TPM2P07951 284 aa21.78■■□□□ 1.08
SYNE3-204ENST00000555759 PRKCSHP14314 528 aaPredicted RBP21.77■■□□□ 1.08
SYNE3-204ENST00000555759 FOXD1Q16676 465 aa21.76■■□□□ 1.07
SYNE3-204ENST00000555759 FOXD4L1Q9NU39 408 aa21.76■■□□□ 1.07
SYNE3-204ENST00000555759 KIF16BQ96L93 1317 aa21.76■■□□□ 1.07
SYNE3-204ENST00000555759 HMMRO75330 724 aa21.76■■□□□ 1.07
SYNE3-204ENST00000555759 U2AF1L5P0DN76 240 aaPredicted RBP21.76■■□□□ 1.07
SYNE3-204ENST00000555759 U2AF1Q01081 240 aaKnown RBP eCLIP21.76■■□□□ 1.07
SYNE3-204ENST00000555759 ABCC8Q09428 1581 aa21.76■■□□□ 1.07
SYNE3-204ENST00000555759 C14orf37Q86TY3 774 aa21.75■■□□□ 1.07
SYNE3-204ENST00000555759 CECR2Q9BXF3 1484 aa21.74■■□□□ 1.07
SYNE3-204ENST00000555759 CUX2O14529 1486 aa21.74■■□□□ 1.07
SYNE3-204ENST00000555759 KANK1Q14678 1352 aa21.73■■□□□ 1.07
SYNE3-204ENST00000555759 ATP6V1DQ9Y5K8 247 aa21.73■■□□□ 1.07
SYNE3-204ENST00000555759 APBB1O00213 710 aa21.72■■□□□ 1.07
SYNE3-204ENST00000555759 EIF3AQ14152 1382 aaKnown RBP21.72■■□□□ 1.07
SYNE3-204ENST00000555759 GNL2Q13823 731 aaKnown RBP21.71■■□□□ 1.07
SYNE3-204ENST00000555759 E9PSI1 815 aa21.71■■□□□ 1.07
SYNE3-204ENST00000555759 CLUAP1Q96AJ1 413 aa21.7■■□□□ 1.07
SYNE3-204ENST00000555759 SETQ01105 290 aaPredicted RBP21.7■■□□□ 1.06
SYNE3-204ENST00000555759 PLPPR3Q6T4P5 718 aa21.7■■□□□ 1.06
SYNE3-204ENST00000555759 NGEFQ8N5V2 710 aa21.7■■□□□ 1.06
SYNE3-204ENST00000555759 CCDC34Q96HJ3 373 aa21.69■■□□□ 1.06
SYNE3-204ENST00000555759 PLIN1O60240 522 aa21.69■■□□□ 1.06
SYNE3-204ENST00000555759 GPS2Q13227 327 aa21.68■■□□□ 1.06
SYNE3-204ENST00000555759 IL27Q8NEV9 243 aa21.67■■□□□ 1.06
SYNE3-204ENST00000555759 TAOK2Q9UL54 1235 aa21.67■■□□□ 1.06
SYNE3-204ENST00000555759 ANKRD30AQ9BXX3 1397 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms